RNA–Protein interactions for RNA: ENST00000563759.1

LINC01960-201, Transcript of long intergenic non-protein coding RNA 1960, humanhuman

BASIC

Gene LINC01960, Length 1,884 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01960-201ENST00000563759 CHMP7Q8WUX9 453 aaPredicted RBP34.81■■■■□ 3.16
LINC01960-201ENST00000563759 CHD1O14646 1710 aa34.78■■■■□ 3.16
LINC01960-201ENST00000563759 FBLN2P98095 1184 aa34.76■■■■□ 3.16
LINC01960-201ENST00000563759 IQGAP2Q13576 1575 aa34.75■■■■□ 3.15
LINC01960-201ENST00000563759 ARHGAP35Q9NRY4 1499 aa34.73■■■■□ 3.15
LINC01960-201ENST00000563759 CEP170Q5SW79 1584 aa34.7■■■■□ 3.15
LINC01960-201ENST00000563759 ARAP1Q96P48 1450 aa34.69■■■■□ 3.14
LINC01960-201ENST00000563759 EFCAB5A4FU69 1503 aa34.69■■■■□ 3.14
LINC01960-201ENST00000563759 KIAA0586Q9BVV6 1533 aa34.64■■■■□ 3.14
LINC01960-201ENST00000563759 VPS8Q8N3P4 1428 aa34.64■■■■□ 3.14
LINC01960-201ENST00000563759 NUP160Q12769 1436 aa34.61■■■■□ 3.13
LINC01960-201ENST00000563759 SAMD9Q5K651 1589 aa34.61■■■■□ 3.13
LINC01960-201ENST00000563759 UGGT2Q9NYU1 1516 aa34.52■■■■□ 3.12
LINC01960-201ENST00000563759 FHOD3Q2V2M9 1422 aa34.49■■■■□ 3.11
LINC01960-201ENST00000563759 P3H3Q8IVL6 736 aa34.47■■■■□ 3.11
LINC01960-201ENST00000563759 KIAA0556O60303 1618 aa34.4■■■■□ 3.1
LINC01960-201ENST00000563759 DISP1Q96F81 1524 aa34.34■■■■□ 3.09
LINC01960-201ENST00000563759 PCF11O94913 1555 aaKnown RBP34.34■■■■□ 3.09
LINC01960-201ENST00000563759 FMN1Q68DA7 1419 aa34.33■■■■□ 3.09
LINC01960-201ENST00000563759 JPH4Q96JJ6 628 aa34.28■■■■□ 3.08
LINC01960-201ENST00000563759 APLP2Q06481 763 aa34.27■■■■□ 3.08
LINC01960-201ENST00000563759 CLASP1Q7Z460 1538 aa34.27■■■■□ 3.08
LINC01960-201ENST00000563759 SHROOM2Q13796 1616 aa34.26■■■■□ 3.08
LINC01960-201ENST00000563759 CARMIL2Q6F5E8 1435 aa34.25■■■■□ 3.07
LINC01960-201ENST00000563759 FYCO1Q9BQS8 1478 aa34.24■■■■□ 3.07
LINC01960-201ENST00000563759 PPARGC1BQ86YN6 1023 aaKnown RBP34.23■■■■□ 3.07
LINC01960-201ENST00000563759 CASKIN1Q8WXD9 1431 aa34.2■■■■□ 3.07
LINC01960-201ENST00000563759 PRG4Q92954 1404 aaPredicted RBP34.15■■■■□ 3.06
LINC01960-201ENST00000563759 CFAP43Q8NDM7 1665 aa34.14■■■■□ 3.06
LINC01960-201ENST00000563759 TIAM1Q13009 1591 aa34.12■■■■□ 3.05
LINC01960-201ENST00000563759 ATP1B4Q9UN42 357 aaPredicted RBP34.11■■■■□ 3.05
LINC01960-201ENST00000563759 HECW1Q76N89 1606 aa34.1■■■■□ 3.05
LINC01960-201ENST00000563759 LRRIQ1Q96JM4 1722 aa34.09■■■■□ 3.05
LINC01960-201ENST00000563759 TTBK1Q5TCY1 1321 aaPredicted RBP34.09■■■■□ 3.05
LINC01960-201ENST00000563759 MAP3K1Q13233 1512 aa34.08■■■■□ 3.05
LINC01960-201ENST00000563759 RAPGEF6Q8TEU7 1601 aa34.03■■■■□ 3.04
LINC01960-201ENST00000563759 ERCC6L2Q5T890 1561 aa34■■■■□ 3.03
LINC01960-201ENST00000563759 OSCARQ8IYS5 282 aa33.99■■■■□ 3.03
LINC01960-201ENST00000563759 TRIM26Q12899 539 aaPredicted RBP33.97■■■■□ 3.03
LINC01960-201ENST00000563759 CCDC18Q5T9S5 1454 aa33.95■■■■□ 3.02
LINC01960-201ENST00000563759 KANK4Q5T7N3 995 aaPredicted RBP33.93■■■■□ 3.02
LINC01960-201ENST00000563759 PLB1Q6P1J6 1458 aa33.91■■■■□ 3.02
LINC01960-201ENST00000563759 LRRC9Q6ZRR7 1453 aa33.9■■■■□ 3.02
LINC01960-201ENST00000563759 EPRSP07814 1512 aaKnown RBP33.89■■■■□ 3.02
LINC01960-201ENST00000563759 PTPRGP23470 1445 aa33.89■■■■□ 3.02
LINC01960-201ENST00000563759 PCGF6Q9BYE7 350 aa33.88■■■■□ 3.01
LINC01960-201ENST00000563759 ABCA8O94911 1581 aa33.87■■■■□ 3.01
LINC01960-201ENST00000563759 NUP153P49790 1475 aaKnown RBP33.86■■■■□ 3.01
LINC01960-201ENST00000563759 CDK13Q14004 1512 aaKnown RBP33.84■■■■□ 3.01
LINC01960-201ENST00000563759 EHBP1L1Q8N3D4 1523 aa33.76■■■■□ 3
LINC01960-201ENST00000563759 ARID3CA6NKF2 412 aa33.76■■■■□ 3
LINC01960-201ENST00000563759 MTUS2Q5JR59 1369 aa33.76■■■□□ 2.99
LINC01960-201ENST00000563759 UACAQ9BZF9 1416 aa33.71■■■□□ 2.99
LINC01960-201ENST00000563759 MAGI3Q5TCQ9 1506 aa33.7■■■□□ 2.99
LINC01960-201ENST00000563759 SUPT6HQ7KZ85 1726 aaKnown RBP33.7■■■□□ 2.99
LINC01960-201ENST00000563759 ABCC2Q92887 1545 aa33.67■■■□□ 2.98
LINC01960-201ENST00000563759 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.65■■■□□ 2.98
LINC01960-201ENST00000563759 HNRNPUL2Q1KMD3 747 aaKnown RBP33.65■■■□□ 2.98
LINC01960-201ENST00000563759 CDK11AQ9UQ88 783 aaPredicted RBP33.59■■■□□ 2.97
LINC01960-201ENST00000563759 ATP10BO94823 1461 aa33.58■■■□□ 2.97
LINC01960-201ENST00000563759 UHRF1BP1LA0JNW5 1464 aa33.56■■■□□ 2.96
LINC01960-201ENST00000563759 NCOA2Q15596 1464 aa33.56■■■□□ 2.96
LINC01960-201ENST00000563759 PHLDB1Q86UU1 1377 aa33.55■■■□□ 2.96
LINC01960-201ENST00000563759 ARHGEF11O15085 1522 aa33.53■■■□□ 2.96
LINC01960-201ENST00000563759 RRBP1Q9P2E9 1410 aaKnown RBP33.51■■■□□ 2.96
LINC01960-201ENST00000563759 ADCY10Q96PN6 1610 aa33.51■■■□□ 2.96
LINC01960-201ENST00000563759 TROQ12816 1431 aaPredicted RBP33.5■■■□□ 2.95
LINC01960-201ENST00000563759 ZCCHC11Q5TAX3 1644 aaKnown RBP33.5■■■□□ 2.95
LINC01960-201ENST00000563759 CCNB3Q8WWL7 1395 aa33.44■■■□□ 2.94
LINC01960-201ENST00000563759 KIF14Q15058 1648 aa33.43■■■□□ 2.94
LINC01960-201ENST00000563759 KDM5BQ9UGL1 1544 aa33.42■■■□□ 2.94
LINC01960-201ENST00000563759 RIMBP3CA6NJZ7 1639 aa33.42■■■□□ 2.94
LINC01960-201ENST00000563759 RIMBP3BA6NNM3 1639 aa33.42■■■□□ 2.94
LINC01960-201ENST00000563759 RIMBP3Q9UFD9 1639 aa33.42■■■□□ 2.94
LINC01960-201ENST00000563759 PLEKHD1A6NEE1 506 aa33.42■■■□□ 2.94
LINC01960-201ENST00000563759 MYOM3Q5VTT5 1437 aa33.4■■■□□ 2.94
LINC01960-201ENST00000563759 FGD6Q6ZV73 1430 aa33.37■■■□□ 2.93
LINC01960-201ENST00000563759 ITSN2Q9NZM3 1697 aa33.34■■■□□ 2.93
LINC01960-201ENST00000563759 PTPN23Q9H3S7 1636 aa33.29■■■□□ 2.92
LINC01960-201ENST00000563759 FAM50AQ14320 339 aaKnown RBP33.26■■■□□ 2.91
LINC01960-201ENST00000563759 CDC42BPAQ5VT25 1732 aa33.25■■■□□ 2.91
LINC01960-201ENST00000563759 MIA2Q96PC5 1412 aa33.22■■■□□ 2.91
LINC01960-201ENST00000563759 ABCC10Q5T3U5 1492 aa33.21■■■□□ 2.91
LINC01960-201ENST00000563759 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP33.2■■■□□ 2.91
LINC01960-201ENST00000563759 TTC37Q6PGP7 1564 aa33.17■■■□□ 2.9
LINC01960-201ENST00000563759 TCOF1Q13428 1488 aaKnown RBP33.16■■■□□ 2.9
LINC01960-201ENST00000563759 GPATCH8Q9UKJ3 1502 aaKnown RBP33.16■■■□□ 2.9
LINC01960-201ENST00000563759 WDR7Q9Y4E6 1490 aa33.16■■■□□ 2.9
LINC01960-201ENST00000563759 NPM1P06748 294 aaKnown RBP eCLIP33.15■■■□□ 2.9
LINC01960-201ENST00000563759 ITGAEP38570 1179 aa33.14■■■□□ 2.9
LINC01960-201ENST00000563759 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.14■■■□□ 2.9
LINC01960-201ENST00000563759 MYO5CQ9NQX4 1742 aa33.13■■■□□ 2.89
LINC01960-201ENST00000563759 CYB5RLQ6IPT4 315 aa33.13■■■□□ 2.89
LINC01960-201ENST00000563759 PREX2Q70Z35 1606 aa33.13■■■□□ 2.89
LINC01960-201ENST00000563759 ASXL2Q76L83 1435 aa33.09■■■□□ 2.89
LINC01960-201ENST00000563759 KCNH8Q96L42 1107 aa33.09■■■□□ 2.89
LINC01960-201ENST00000563759 CDC42BPBQ9Y5S2 1711 aa33.09■■■□□ 2.89
LINC01960-201ENST00000563759 CFDP1Q9UEE9 299 aaPredicted RBP33.07■■■□□ 2.88
LINC01960-201ENST00000563759 CAMSAP2Q08AD1 1489 aa33.05■■■□□ 2.88
LINC01960-201ENST00000563759 DNMT1P26358 1616 aaKnown RBP32.98■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms