RNA–Protein interactions for RNA: ENST00000563759.1

LINC01960-201, Transcript of long intergenic non-protein coding RNA 1960, humanhuman

BASIC

Gene LINC01960, Length 1,884 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01960-201ENST00000563759 NISCHQ9Y2I1 1504 aa50.53■■■■■ 5.68
LINC01960-201ENST00000563759 CCDC180Q9P1Z9 1646 aa44.36■■■■■ 4.69
LINC01960-201ENST00000563759 ZCCHC6Q5VYS8 1495 aaKnown RBP42.4■■■■■ 4.38
LINC01960-201ENST00000563759 ABCC9O60706 1549 aa42.12■■■■■ 4.33
LINC01960-201ENST00000563759 DCAF1Q9Y4B6 1507 aa41.8■■■■■ 4.28
LINC01960-201ENST00000563759 DCAF8L2P0C7V8 631 aa41.78■■■■■ 4.28
LINC01960-201ENST00000563759 MYO15BQ96JP2 1530 aa41.42■■■■■ 4.22
LINC01960-201ENST00000563759 NACADO15069 1562 aa41.31■■■■■ 4.2
LINC01960-201ENST00000563759 RB1CC1Q8TDY2 1594 aa41.07■■■■■ 4.17
LINC01960-201ENST00000563759 SHROOM4Q9ULL8 1493 aa40.95■■■■■ 4.15
LINC01960-201ENST00000563759 SCRIBQ14160 1630 aa40.7■■■■■ 4.11
LINC01960-201ENST00000563759 UNC13AQ9UPW8 1703 aa40.33■■■■■ 4.05
LINC01960-201ENST00000563759 BICRAQ9NZM4 1560 aa39.78■■■■□ 3.96
LINC01960-201ENST00000563759 PABPN1Q86U42 306 aaKnown RBP eCLIP39.57■■■■□ 3.92
LINC01960-201ENST00000563759 CECR2Q9BXF3 1484 aa39.25■■■■□ 3.87
LINC01960-201ENST00000563759 SUPT5HO00267 1087 aaKnown RBP39.2■■■■□ 3.87
LINC01960-201ENST00000563759 BAZ1AQ9NRL2 1556 aaPredicted RBP39.1■■■■□ 3.85
LINC01960-201ENST00000563759 RSF1Q96T23 1441 aaPredicted RBP39.02■■■■□ 3.84
LINC01960-201ENST00000563759 MROH2BQ7Z745 1585 aa39.02■■■■□ 3.84
LINC01960-201ENST00000563759 SMARCA4P51532 1647 aa38.99■■■■□ 3.83
LINC01960-201ENST00000563759 WIZO95785 1651 aa38.75■■■■□ 3.79
LINC01960-201ENST00000563759 EIF4G1Q04637 1599 aaKnown RBP38.64■■■■□ 3.78
LINC01960-201ENST00000563759 PEG3Q9GZU2 1588 aa38.49■■■■□ 3.75
LINC01960-201ENST00000563759 SMARCA2P51531 1590 aa38.39■■■■□ 3.74
LINC01960-201ENST00000563759 ATAD2BQ9ULI0 1458 aa38.34■■■■□ 3.73
LINC01960-201ENST00000563759 TOP2AP11388 1531 aaKnown RBP38.33■■■■□ 3.73
LINC01960-201ENST00000563759 CC2D2AQ9P2K1 1620 aa38.17■■■■□ 3.7
LINC01960-201ENST00000563759 BAZ1BQ9UIG0 1483 aaKnown RBP38.17■■■■□ 3.7
LINC01960-201ENST00000563759 HMGXB3Q12766 1538 aa38.07■■■■□ 3.68
LINC01960-201ENST00000563759 NCAPD3P42695 1498 aa38.05■■■■□ 3.68
LINC01960-201ENST00000563759 CCDC88BA6NC98 1476 aa37.85■■■■□ 3.65
LINC01960-201ENST00000563759 CHIC1Q5VXU3 224 aa37.3■■■■□ 3.56
LINC01960-201ENST00000563759 DNAJC5BQ9UF47 199 aa37.3■■■■□ 3.56
LINC01960-201ENST00000563759 PRDM2Q13029 1718 aa37.17■■■■□ 3.54
LINC01960-201ENST00000563759 CFTRP13569 1480 aa37.13■■■■□ 3.53
LINC01960-201ENST00000563759 CADPSQ9ULU8 1353 aa37.04■■■■□ 3.52
LINC01960-201ENST00000563759 ABCC8Q09428 1581 aa37.02■■■■□ 3.52
LINC01960-201ENST00000563759 LAMC3Q9Y6N6 1575 aa36.92■■■■□ 3.5
LINC01960-201ENST00000563759 TRIM41Q8WV44 630 aa36.9■■■■□ 3.5
LINC01960-201ENST00000563759 NESP48681 1621 aa36.87■■■■□ 3.49
LINC01960-201ENST00000563759 WRNQ14191 1432 aaPredicted RBP eCLIP36.79■■■■□ 3.48
LINC01960-201ENST00000563759 SYNJ1O43426 1573 aa36.69■■■■□ 3.46
LINC01960-201ENST00000563759 FANCD2Q9BXW9 1451 aa36.69■■■■□ 3.46
LINC01960-201ENST00000563759 TOP2BQ02880 1626 aa36.59■■■■□ 3.45
LINC01960-201ENST00000563759 BIVM-ERCC5R4GMW8 1640 aa36.58■■■■□ 3.45
LINC01960-201ENST00000563759 PDS5BQ9NTI5 1447 aa36.58■■■■□ 3.45
LINC01960-201ENST00000563759 KIF21AQ7Z4S6 1674 aa36.56■■■■□ 3.44
LINC01960-201ENST00000563759 CEP164Q9UPV0 1460 aa36.53■■■■□ 3.44
LINC01960-201ENST00000563759 CUX1P39880 1505 aa36.52■■■■□ 3.44
LINC01960-201ENST00000563759 DNMBPQ6XZF7 1577 aa36.35■■■■□ 3.41
LINC01960-201ENST00000563759 TOPBP1Q92547 1522 aa36.26■■■■□ 3.4
LINC01960-201ENST00000563759 URB2Q14146 1524 aaKnown RBP36.24■■■■□ 3.39
LINC01960-201ENST00000563759 FAM9AQ8IZU1 332 aaPredicted RBP36.2■■■■□ 3.39
LINC01960-201ENST00000563759 ERCC6Q03468 1493 aa36.2■■■■□ 3.39
LINC01960-201ENST00000563759 FGD5Q6ZNL6 1462 aa36.19■■■■□ 3.38
LINC01960-201ENST00000563759 SOGA1O94964 1423 aa36.16■■■■□ 3.38
LINC01960-201ENST00000563759 MRC2Q9UBG0 1479 aa36.16■■■■□ 3.38
LINC01960-201ENST00000563759 EEA1Q15075 1411 aa36.09■■■■□ 3.37
LINC01960-201ENST00000563759 POLA1P09884 1462 aaPredicted RBP36.06■■■■□ 3.36
LINC01960-201ENST00000563759 RUSC2Q8N2Y8 1516 aa36.05■■■■□ 3.36
LINC01960-201ENST00000563759 THOC2Q8NI27 1593 aaKnown RBP36■■■■□ 3.35
LINC01960-201ENST00000563759 WDR62O43379 1518 aa35.99■■■■□ 3.35
LINC01960-201ENST00000563759 RAD54L2Q9Y4B4 1467 aa35.9■■■■□ 3.34
LINC01960-201ENST00000563759 KIF27Q86VH2 1401 aa35.89■■■■□ 3.34
LINC01960-201ENST00000563759 CUX2O14529 1486 aa35.88■■■■□ 3.33
LINC01960-201ENST00000563759 WDR97A6NE52 1622 aa35.88■■■■□ 3.33
LINC01960-201ENST00000563759 ABCA10Q8WWZ4 1543 aa35.85■■■■□ 3.33
LINC01960-201ENST00000563759 LOC105371045A0A1W2PR82 267 aa35.84■■■■□ 3.33
LINC01960-201ENST00000563759 CSRNP3Q8WYN3 585 aa35.84■■■■□ 3.33
LINC01960-201ENST00000563759 TARBP1Q13395 1621 aaKnown RBP35.78■■■■□ 3.32
LINC01960-201ENST00000563759 EHMT2Q96KQ7 1210 aa35.72■■■■□ 3.31
LINC01960-201ENST00000563759 KIF21BO75037 1637 aa35.7■■■■□ 3.31
LINC01960-201ENST00000563759 ABCA5Q8WWZ7 1642 aa35.66■■■■□ 3.3
LINC01960-201ENST00000563759 IFT140Q96RY7 1462 aa35.64■■■■□ 3.3
LINC01960-201ENST00000563759 GOLGA3Q08378 1498 aa35.6■■■■□ 3.29
LINC01960-201ENST00000563759 TDRD9Q8NDG6 1382 aaKnown RBP35.56■■■■□ 3.28
LINC01960-201ENST00000563759 GAPVD1Q14C86 1478 aa35.53■■■■□ 3.28
LINC01960-201ENST00000563759 PRXQ9BXM0 1461 aa35.53■■■■□ 3.28
LINC01960-201ENST00000563759 IGF1RP08069 1367 aa35.51■■■■□ 3.28
LINC01960-201ENST00000563759 ERICH3Q5RHP9 1530 aa35.51■■■■□ 3.28
LINC01960-201ENST00000563759 PBRM1Q86U86 1689 aa35.51■■■■□ 3.27
LINC01960-201ENST00000563759 RAPGEF2Q9Y4G8 1499 aa35.49■■■■□ 3.27
LINC01960-201ENST00000563759 CUL7Q14999 1698 aa35.48■■■■□ 3.27
LINC01960-201ENST00000563759 ZNF608Q9ULD9 1512 aaPredicted RBP35.44■■■■□ 3.26
LINC01960-201ENST00000563759 EIF4G3O43432 1585 aaKnown RBP35.42■■■■□ 3.26
LINC01960-201ENST00000563759 AQRO60306 1485 aaKnown RBP eCLIP35.4■■■■□ 3.26
LINC01960-201ENST00000563759 UBTFP17480 764 aaKnown RBP35.4■■■■□ 3.26
LINC01960-201ENST00000563759 CARMIL1Q5VZK9 1371 aa35.37■■■■□ 3.25
LINC01960-201ENST00000563759 TNIKQ9UKE5 1360 aa35.34■■■■□ 3.25
LINC01960-201ENST00000563759 GRIN2BQ13224 1484 aa35.31■■■■□ 3.24
LINC01960-201ENST00000563759 ADAMTS12P58397 1594 aa35.22■■■■□ 3.23
LINC01960-201ENST00000563759 CEP162Q5TB80 1403 aa35.19■■■■□ 3.22
LINC01960-201ENST00000563759 SNAPC4Q5SXM2 1469 aa35.13■■■■□ 3.21
LINC01960-201ENST00000563759 FHAD1B1AJZ9 1412 aa35.13■■■■□ 3.21
LINC01960-201ENST00000563759 CTTNBP2Q8WZ74 1663 aa35.09■■■■□ 3.21
LINC01960-201ENST00000563759 MAGI1Q96QZ7 1491 aaPredicted RBP35.07■■■■□ 3.21
LINC01960-201ENST00000563759 CLIP1P30622 1438 aa34.99■■■■□ 3.19
LINC01960-201ENST00000563759 RANGAP1P46060 587 aaPredicted RBP34.93■■■■□ 3.18
LINC01960-201ENST00000563759 SYNJ2O15056 1496 aa34.93■■■■□ 3.18
LINC01960-201ENST00000563759 GRIN2AQ12879 1464 aa34.89■■■■□ 3.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms