RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 FHAD1B1AJZ9 1412 aa14.07□□□□□ -0.16
TDP1-210ENST00000554976 PCGF6Q9BYE7 350 aa14.05□□□□□ -0.16
TDP1-210ENST00000554976 CFAP43Q8NDM7 1665 aa14.04□□□□□ -0.16
TDP1-210ENST00000554976 LRRIQ1Q96JM4 1722 aa14.03□□□□□ -0.16
TDP1-210ENST00000554976 MAP3K1Q13233 1512 aa14.01□□□□□ -0.17
TDP1-210ENST00000554976 PCF11O94913 1555 aaKnown RBP14.01□□□□□ -0.17
TDP1-210ENST00000554976 SNAPC4Q5SXM2 1469 aa14.01□□□□□ -0.17
TDP1-210ENST00000554976 MAGI1Q96QZ7 1491 aaPredicted RBP14.01□□□□□ -0.17
TDP1-210ENST00000554976 IQGAP2Q13576 1575 aa13.99□□□□□ -0.17
TDP1-210ENST00000554976 TIAM1Q13009 1591 aa13.97□□□□□ -0.17
TDP1-210ENST00000554976 CEP170Q5SW79 1584 aa13.97□□□□□ -0.17
TDP1-210ENST00000554976 GRIN2AQ12879 1464 aa13.96□□□□□ -0.17
TDP1-210ENST00000554976 UGGT2Q9NYU1 1516 aa13.96□□□□□ -0.17
TDP1-210ENST00000554976 SYNJ2O15056 1496 aa13.94□□□□□ -0.18
TDP1-210ENST00000554976 FYCO1Q9BQS8 1478 aa13.93□□□□□ -0.18
TDP1-210ENST00000554976 PPARGC1BQ86YN6 1023 aaKnown RBP13.92□□□□□ -0.18
TDP1-210ENST00000554976 FHOD3Q2V2M9 1422 aa13.91□□□□□ -0.18
TDP1-210ENST00000554976 KIAA0556O60303 1618 aa13.9□□□□□ -0.18
TDP1-210ENST00000554976 CASKIN1Q8WXD9 1431 aa13.9□□□□□ -0.18
TDP1-210ENST00000554976 KIAA0586Q9BVV6 1533 aa13.89□□□□□ -0.19
TDP1-210ENST00000554976 NUP160Q12769 1436 aa13.89□□□□□ -0.19
TDP1-210ENST00000554976 CHD1O14646 1710 aa13.89□□□□□ -0.19
TDP1-210ENST00000554976 DISP1Q96F81 1524 aa13.88□□□□□ -0.19
TDP1-210ENST00000554976 RANGAP1P46060 587 aaPredicted RBP13.88□□□□□ -0.19
TDP1-210ENST00000554976 FMN1Q68DA7 1419 aa13.84□□□□□ -0.19
TDP1-210ENST00000554976 LRRC9Q6ZRR7 1453 aa13.84□□□□□ -0.19
TDP1-210ENST00000554976 HRCP23327 699 aa13.83□□□□□ -0.19
TDP1-210ENST00000554976 KANK4Q5T7N3 995 aaPredicted RBP13.82□□□□□ -0.2
TDP1-210ENST00000554976 RRBP1Q9P2E9 1410 aaKnown RBP13.82□□□□□ -0.2
TDP1-210ENST00000554976 SHROOM2Q13796 1616 aa13.82□□□□□ -0.2
TDP1-210ENST00000554976 HECW1Q76N89 1606 aa13.81□□□□□ -0.2
TDP1-210ENST00000554976 MAGI3Q5TCQ9 1506 aa13.77□□□□□ -0.2
TDP1-210ENST00000554976 ARHGEF11O15085 1522 aa13.77□□□□□ -0.21
TDP1-210ENST00000554976 RAPGEF6Q8TEU7 1601 aa13.76□□□□□ -0.21
TDP1-210ENST00000554976 P3H3Q8IVL6 736 aa13.74□□□□□ -0.21
TDP1-210ENST00000554976 CCDC18Q5T9S5 1454 aa13.74□□□□□ -0.21
TDP1-210ENST00000554976 EHBP1L1Q8N3D4 1523 aa13.73□□□□□ -0.21
TDP1-210ENST00000554976 CLASP1Q7Z460 1538 aa13.73□□□□□ -0.21
TDP1-210ENST00000554976 TTBK1Q5TCY1 1321 aaPredicted RBP13.72□□□□□ -0.21
TDP1-210ENST00000554976 SUPT6HQ7KZ85 1726 aaKnown RBP13.71□□□□□ -0.21
TDP1-210ENST00000554976 EPRSP07814 1512 aaKnown RBP13.71□□□□□ -0.21
TDP1-210ENST00000554976 APLP2Q06481 763 aa13.71□□□□□ -0.22
TDP1-210ENST00000554976 ABCA8O94911 1581 aa13.7□□□□□ -0.22
TDP1-210ENST00000554976 PHLDB1Q86UU1 1377 aa13.69□□□□□ -0.22
TDP1-210ENST00000554976 NUP153P49790 1475 aaKnown RBP13.69□□□□□ -0.22
TDP1-210ENST00000554976 CHMP7Q8WUX9 453 aaPredicted RBP13.68□□□□□ -0.22
TDP1-210ENST00000554976 ADCY10Q96PN6 1610 aa13.67□□□□□ -0.22
TDP1-210ENST00000554976 CDK13Q14004 1512 aaKnown RBP13.67□□□□□ -0.22
TDP1-210ENST00000554976 CCNB3Q8WWL7 1395 aa13.64□□□□□ -0.23
TDP1-210ENST00000554976 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.63□□□□□ -0.23
TDP1-210ENST00000554976 NCOA2Q15596 1464 aa13.63□□□□□ -0.23
TDP1-210ENST00000554976 ERCC6L2Q5T890 1561 aa13.61□□□□□ -0.23
TDP1-210ENST00000554976 PLB1Q6P1J6 1458 aa13.6□□□□□ -0.23
TDP1-210ENST00000554976 CARMIL2Q6F5E8 1435 aa13.6□□□□□ -0.23
TDP1-210ENST00000554976 TCOF1Q13428 1488 aaKnown RBP13.59□□□□□ -0.23
TDP1-210ENST00000554976 JPH4Q96JJ6 628 aa13.59□□□□□ -0.23
TDP1-210ENST00000554976 PTPN23Q9H3S7 1636 aa13.59□□□□□ -0.23
TDP1-210ENST00000554976 FGD6Q6ZV73 1430 aa13.58□□□□□ -0.23
TDP1-210ENST00000554976 PRG4Q92954 1404 aaPredicted RBP13.57□□□□□ -0.24
TDP1-210ENST00000554976 MYOM3Q5VTT5 1437 aa13.57□□□□□ -0.24
TDP1-210ENST00000554976 KIF14Q15058 1648 aa13.55□□□□□ -0.24
TDP1-210ENST00000554976 FBLN2P98095 1184 aa13.55□□□□□ -0.24
TDP1-210ENST00000554976 MTUS2Q5JR59 1369 aa13.54□□□□□ -0.24
TDP1-210ENST00000554976 PELP1Q8IZL8 1130 aaKnown RBP13.54□□□□□ -0.24
TDP1-210ENST00000554976 ITSN2Q9NZM3 1697 aa13.53□□□□□ -0.24
TDP1-210ENST00000554976 ZEB1P37275 1124 aaPredicted RBP13.53□□□□□ -0.24
TDP1-210ENST00000554976 CDC42BPAQ5VT25 1732 aa13.52□□□□□ -0.25
TDP1-210ENST00000554976 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.52□□□□□ -0.25
TDP1-210ENST00000554976 GCC2Q8IWJ2 1684 aa13.52□□□□□ -0.25
TDP1-210ENST00000554976 ATP10BO94823 1461 aa13.51□□□□□ -0.25
TDP1-210ENST00000554976 CROCC2H7BZ55 1655 aa13.5□□□□□ -0.25
TDP1-210ENST00000554976 MIA2Q96PC5 1412 aa13.5□□□□□ -0.25
TDP1-210ENST00000554976 HNRNPUL2Q1KMD3 747 aaKnown RBP13.5□□□□□ -0.25
TDP1-210ENST00000554976 TROQ12816 1431 aaPredicted RBP13.49□□□□□ -0.25
TDP1-210ENST00000554976 PTPRKQ15262 1439 aa13.49□□□□□ -0.25
TDP1-210ENST00000554976 ABCC2Q92887 1545 aa13.49□□□□□ -0.25
TDP1-210ENST00000554976 ABCC10Q5T3U5 1492 aa13.48□□□□□ -0.25
TDP1-210ENST00000554976 ATP1B4Q9UN42 357 aaPredicted RBP13.48□□□□□ -0.25
TDP1-210ENST00000554976 DNMT1P26358 1616 aaKnown RBP13.48□□□□□ -0.25
TDP1-210ENST00000554976 UHRF1BP1LA0JNW5 1464 aa13.47□□□□□ -0.25
TDP1-210ENST00000554976 DHX57Q6P158 1386 aaKnown RBP13.46□□□□□ -0.25
TDP1-210ENST00000554976 ZCCHC11Q5TAX3 1644 aaKnown RBP13.46□□□□□ -0.25
TDP1-210ENST00000554976 PTPRGP23470 1445 aa13.45□□□□□ -0.26
TDP1-210ENST00000554976 UACAQ9BZF9 1416 aa13.45□□□□□ -0.26
TDP1-210ENST00000554976 MAPKBP1O60336 1514 aa13.44□□□□□ -0.26
TDP1-210ENST00000554976 CDC42BPBQ9Y5S2 1711 aa13.44□□□□□ -0.26
TDP1-210ENST00000554976 PREX2Q70Z35 1606 aa13.43□□□□□ -0.26
TDP1-210ENST00000554976 ADGBQ8N7X0 1667 aa13.43□□□□□ -0.26
TDP1-210ENST00000554976 GPATCH8Q9UKJ3 1502 aaKnown RBP13.43□□□□□ -0.26
TDP1-210ENST00000554976 SETD5Q9C0A6 1442 aa13.42□□□□□ -0.26
TDP1-210ENST00000554976 AKNAQ7Z591 1439 aa13.42□□□□□ -0.26
TDP1-210ENST00000554976 RAB3GAP2Q9H2M9 1393 aa13.42□□□□□ -0.26
TDP1-210ENST00000554976 HFM1A2PYH4 1435 aa13.41□□□□□ -0.26
TDP1-210ENST00000554976 CCER1Q8TC90 406 aaPredicted RBP13.41□□□□□ -0.26
TDP1-210ENST00000554976 KDM5BQ9UGL1 1544 aa13.41□□□□□ -0.26
TDP1-210ENST00000554976 TTC37Q6PGP7 1564 aa13.39□□□□□ -0.27
TDP1-210ENST00000554976 KDM6BO15054 1643 aa13.39□□□□□ -0.27
TDP1-210ENST00000554976 CAMSAP2Q08AD1 1489 aa13.39□□□□□ -0.27
TDP1-210ENST00000554976 NAIPQ13075 1403 aa13.38□□□□□ -0.27
TDP1-210ENST00000554976 CLSPNQ9HAW4 1339 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 121.6 ms