RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 NISCHQ9Y2I1 1504 aa20.46■□□□□ 0.87
TDP1-210ENST00000554976 CCDC180Q9P1Z9 1646 aa17.93■□□□□ 0.46
TDP1-210ENST00000554976 ZCCHC6Q5VYS8 1495 aaKnown RBP17.26■□□□□ 0.35
TDP1-210ENST00000554976 DCAF1Q9Y4B6 1507 aa17■□□□□ 0.31
TDP1-210ENST00000554976 MYO15BQ96JP2 1530 aa16.77■□□□□ 0.28
TDP1-210ENST00000554976 ABCC9O60706 1549 aa16.59■□□□□ 0.25
TDP1-210ENST00000554976 NACADO15069 1562 aa16.56■□□□□ 0.24
TDP1-210ENST00000554976 SHROOM4Q9ULL8 1493 aa16.49■□□□□ 0.23
TDP1-210ENST00000554976 DCAF8L2P0C7V8 631 aa16.4■□□□□ 0.22
TDP1-210ENST00000554976 RB1CC1Q8TDY2 1594 aa16.36■□□□□ 0.21
TDP1-210ENST00000554976 SCRIBQ14160 1630 aa16.35■□□□□ 0.21
TDP1-210ENST00000554976 UNC13AQ9UPW8 1703 aa16.27■□□□□ 0.2
TDP1-210ENST00000554976 BICRAQ9NZM4 1560 aa16■□□□□ 0.15
TDP1-210ENST00000554976 RSF1Q96T23 1441 aaPredicted RBP15.86■□□□□ 0.13
TDP1-210ENST00000554976 CECR2Q9BXF3 1484 aa15.86■□□□□ 0.13
TDP1-210ENST00000554976 SUPT5HO00267 1087 aaKnown RBP15.83■□□□□ 0.12
TDP1-210ENST00000554976 MROH2BQ7Z745 1585 aa15.81■□□□□ 0.12
TDP1-210ENST00000554976 BAZ1AQ9NRL2 1556 aaPredicted RBP15.77■□□□□ 0.11
TDP1-210ENST00000554976 SMARCA4P51532 1647 aa15.75■□□□□ 0.11
TDP1-210ENST00000554976 WIZO95785 1651 aa15.73■□□□□ 0.11
TDP1-210ENST00000554976 PEG3Q9GZU2 1588 aa15.63■□□□□ 0.09
TDP1-210ENST00000554976 PABPN1Q86U42 306 aaKnown RBP eCLIP15.56■□□□□ 0.08
TDP1-210ENST00000554976 TOP2AP11388 1531 aaKnown RBP15.55■□□□□ 0.08
TDP1-210ENST00000554976 EIF4G1Q04637 1599 aaKnown RBP15.51■□□□□ 0.07
TDP1-210ENST00000554976 SMARCA2P51531 1590 aa15.44■□□□□ 0.06
TDP1-210ENST00000554976 ATAD2BQ9ULI0 1458 aa15.39■□□□□ 0.05
TDP1-210ENST00000554976 CHIC1Q5VXU3 224 aa15.35■□□□□ 0.05
TDP1-210ENST00000554976 CCDC88BA6NC98 1476 aa15.33■□□□□ 0.04
TDP1-210ENST00000554976 HMGXB3Q12766 1538 aa15.31■□□□□ 0.04
TDP1-210ENST00000554976 NCAPD3P42695 1498 aa15.25■□□□□ 0.03
TDP1-210ENST00000554976 BAZ1BQ9UIG0 1483 aaKnown RBP15.25■□□□□ 0.03
TDP1-210ENST00000554976 CC2D2AQ9P2K1 1620 aa15.16■□□□□ 0.02
TDP1-210ENST00000554976 PRDM2Q13029 1718 aa15.1■□□□□ 0.01
TDP1-210ENST00000554976 ABCC8Q09428 1581 aa15.05■□□□□ 0
TDP1-210ENST00000554976 SYNJ1O43426 1573 aa14.94□□□□□ -0.02
TDP1-210ENST00000554976 CFTRP13569 1480 aa14.94□□□□□ -0.02
TDP1-210ENST00000554976 BIVM-ERCC5R4GMW8 1640 aa14.93□□□□□ -0.02
TDP1-210ENST00000554976 TRIM41Q8WV44 630 aa14.9□□□□□ -0.02
TDP1-210ENST00000554976 TOP2BQ02880 1626 aa14.88□□□□□ -0.03
TDP1-210ENST00000554976 WRNQ14191 1432 aaPredicted RBP eCLIP14.86□□□□□ -0.03
TDP1-210ENST00000554976 CUX1P39880 1505 aa14.79□□□□□ -0.04
TDP1-210ENST00000554976 CADPSQ9ULU8 1353 aa14.78□□□□□ -0.04
TDP1-210ENST00000554976 LAMC3Q9Y6N6 1575 aa14.75□□□□□ -0.05
TDP1-210ENST00000554976 SOGA1O94964 1423 aa14.73□□□□□ -0.05
TDP1-210ENST00000554976 RUSC2Q8N2Y8 1516 aa14.72□□□□□ -0.05
TDP1-210ENST00000554976 LOC105371045A0A1W2PR82 267 aa14.71□□□□□ -0.06
TDP1-210ENST00000554976 EEA1Q15075 1411 aa14.7□□□□□ -0.06
TDP1-210ENST00000554976 NESP48681 1621 aa14.67□□□□□ -0.06
TDP1-210ENST00000554976 KIF21BO75037 1637 aa14.66□□□□□ -0.06
TDP1-210ENST00000554976 FANCD2Q9BXW9 1451 aa14.64□□□□□ -0.07
TDP1-210ENST00000554976 KIF21AQ7Z4S6 1674 aa14.64□□□□□ -0.07
TDP1-210ENST00000554976 DNAJC5BQ9UF47 199 aa14.63□□□□□ -0.07
TDP1-210ENST00000554976 DNMBPQ6XZF7 1577 aa14.62□□□□□ -0.07
TDP1-210ENST00000554976 WDR97A6NE52 1622 aa14.6□□□□□ -0.07
TDP1-210ENST00000554976 FAM9AQ8IZU1 332 aaPredicted RBP14.57□□□□□ -0.08
TDP1-210ENST00000554976 TOPBP1Q92547 1522 aa14.55□□□□□ -0.08
TDP1-210ENST00000554976 FGD5Q6ZNL6 1462 aa14.54□□□□□ -0.08
TDP1-210ENST00000554976 URB2Q14146 1524 aaKnown RBP14.54□□□□□ -0.08
TDP1-210ENST00000554976 CEP164Q9UPV0 1460 aa14.53□□□□□ -0.08
TDP1-210ENST00000554976 ERICH3Q5RHP9 1530 aa14.51□□□□□ -0.09
TDP1-210ENST00000554976 GOLGA3Q08378 1498 aa14.51□□□□□ -0.09
TDP1-210ENST00000554976 CSRNP3Q8WYN3 585 aa14.5□□□□□ -0.09
TDP1-210ENST00000554976 PRXQ9BXM0 1461 aa14.49□□□□□ -0.09
TDP1-210ENST00000554976 TNIKQ9UKE5 1360 aa14.48□□□□□ -0.09
TDP1-210ENST00000554976 POLA1P09884 1462 aaPredicted RBP14.48□□□□□ -0.09
TDP1-210ENST00000554976 PDS5BQ9NTI5 1447 aa14.47□□□□□ -0.09
TDP1-210ENST00000554976 ABCA10Q8WWZ4 1543 aa14.46□□□□□ -0.09
TDP1-210ENST00000554976 RAPGEF2Q9Y4G8 1499 aa14.44□□□□□ -0.1
TDP1-210ENST00000554976 TARBP1Q13395 1621 aaKnown RBP14.44□□□□□ -0.1
TDP1-210ENST00000554976 ABCA5Q8WWZ7 1642 aa14.44□□□□□ -0.1
TDP1-210ENST00000554976 KIF27Q86VH2 1401 aa14.44□□□□□ -0.1
TDP1-210ENST00000554976 WDR62O43379 1518 aa14.4□□□□□ -0.1
TDP1-210ENST00000554976 CEP162Q5TB80 1403 aa14.4□□□□□ -0.1
TDP1-210ENST00000554976 THOC2Q8NI27 1593 aaKnown RBP14.39□□□□□ -0.11
TDP1-210ENST00000554976 CUX2O14529 1486 aa14.39□□□□□ -0.11
TDP1-210ENST00000554976 RAD54L2Q9Y4B4 1467 aa14.39□□□□□ -0.11
TDP1-210ENST00000554976 MRC2Q9UBG0 1479 aa14.37□□□□□ -0.11
TDP1-210ENST00000554976 CUL7Q14999 1698 aa14.36□□□□□ -0.11
TDP1-210ENST00000554976 IGF1RP08069 1367 aa14.34□□□□□ -0.11
TDP1-210ENST00000554976 PBRM1Q86U86 1689 aa14.33□□□□□ -0.12
TDP1-210ENST00000554976 EHMT2Q96KQ7 1210 aa14.3□□□□□ -0.12
TDP1-210ENST00000554976 CTTNBP2Q8WZ74 1663 aa14.28□□□□□ -0.12
TDP1-210ENST00000554976 CLIP1P30622 1438 aa14.23□□□□□ -0.13
TDP1-210ENST00000554976 ARAP1Q96P48 1450 aa14.22□□□□□ -0.13
TDP1-210ENST00000554976 CARMIL1Q5VZK9 1371 aa14.21□□□□□ -0.13
TDP1-210ENST00000554976 GAPVD1Q14C86 1478 aa14.21□□□□□ -0.13
TDP1-210ENST00000554976 IFT140Q96RY7 1462 aa14.2□□□□□ -0.14
TDP1-210ENST00000554976 ADAMTS12P58397 1594 aa14.2□□□□□ -0.14
TDP1-210ENST00000554976 UBTFP17480 764 aaKnown RBP14.19□□□□□ -0.14
TDP1-210ENST00000554976 EIF4G3O43432 1585 aaKnown RBP14.18□□□□□ -0.14
TDP1-210ENST00000554976 VPS8Q8N3P4 1428 aa14.17□□□□□ -0.14
TDP1-210ENST00000554976 ARHGAP35Q9NRY4 1499 aa14.17□□□□□ -0.14
TDP1-210ENST00000554976 TDRD9Q8NDG6 1382 aaKnown RBP14.14□□□□□ -0.15
TDP1-210ENST00000554976 ERCC6Q03468 1493 aa14.14□□□□□ -0.15
TDP1-210ENST00000554976 ZNF608Q9ULD9 1512 aaPredicted RBP14.13□□□□□ -0.15
TDP1-210ENST00000554976 SAMD9Q5K651 1589 aa14.12□□□□□ -0.15
TDP1-210ENST00000554976 TRIM26Q12899 539 aaPredicted RBP14.1□□□□□ -0.15
TDP1-210ENST00000554976 AQRO60306 1485 aaKnown RBP eCLIP14.1□□□□□ -0.152e-7■■■■□ 20.2
TDP1-210ENST00000554976 GRIN2BQ13224 1484 aa14.1□□□□□ -0.15
TDP1-210ENST00000554976 EFCAB5A4FU69 1503 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms