RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 ABCA5Q8WWZ7 1642 aa17.72■□□□□ 0.43
SHMT2-212ENST00000554467 TARBP1Q13395 1621 aaKnown RBP17.72■□□□□ 0.43
SHMT2-212ENST00000554467 ZEB1P37275 1124 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-212ENST00000554467 FHOD3Q2V2M9 1422 aa17.7■□□□□ 0.42
SHMT2-212ENST00000554467 CUL7Q14999 1698 aa17.69■□□□□ 0.42
SHMT2-212ENST00000554467 ZNF608Q9ULD9 1512 aaPredicted RBP17.67■□□□□ 0.42
SHMT2-212ENST00000554467 MYT1Q01538 1121 aa17.62■□□□□ 0.41
SHMT2-212ENST00000554467 ITGAEP38570 1179 aa17.6■□□□□ 0.41
SHMT2-212ENST00000554467 CTTNBP2Q8WZ74 1663 aa17.6■□□□□ 0.41
SHMT2-212ENST00000554467 WDR62O43379 1518 aa17.59■□□□□ 0.41
SHMT2-212ENST00000554467 PBRM1Q86U86 1689 aa17.58■□□□□ 0.4
SHMT2-212ENST00000554467 PCF11O94913 1555 aaKnown RBP17.57■□□□□ 0.4
SHMT2-212ENST00000554467 IFT140Q96RY7 1462 aa17.55■□□□□ 0.4
SHMT2-212ENST00000554467 FHAD1B1AJZ9 1412 aa17.54■□□□□ 0.4
SHMT2-212ENST00000554467 GRIN2BQ13224 1484 aa17.53■□□□□ 0.4
SHMT2-212ENST00000554467 TIAM1Q13009 1591 aa17.53■□□□□ 0.4
SHMT2-212ENST00000554467 FBLN2P98095 1184 aa17.52■□□□□ 0.4
SHMT2-212ENST00000554467 THOC2Q8NI27 1593 aaKnown RBP17.5■□□□□ 0.39
SHMT2-212ENST00000554467 ARID3CA6NKF2 412 aa17.5■□□□□ 0.39
SHMT2-212ENST00000554467 EFCAB5A4FU69 1503 aa17.5■□□□□ 0.39
SHMT2-212ENST00000554467 ADAMTS12P58397 1594 aa17.5■□□□□ 0.39
SHMT2-212ENST00000554467 SNAPC4Q5SXM2 1469 aa17.49■□□□□ 0.39
SHMT2-212ENST00000554467 LRRC9Q6ZRR7 1453 aa17.48■□□□□ 0.39
SHMT2-212ENST00000554467 EIF4G3O43432 1585 aaKnown RBP17.47■□□□□ 0.39
SHMT2-212ENST00000554467 CCNB3Q8WWL7 1395 aa17.46■□□□□ 0.39
SHMT2-212ENST00000554467 NEUROD1Q13562 356 aa17.46■□□□□ 0.39
SHMT2-212ENST00000554467 PHLDB1Q86UU1 1377 aa17.45■□□□□ 0.38
SHMT2-212ENST00000554467 ACIN1Q9UKV3 1341 aaKnown RBP17.45■□□□□ 0.38
SHMT2-212ENST00000554467 CASKIN1Q8WXD9 1431 aa17.45■□□□□ 0.38
SHMT2-212ENST00000554467 FAM50AQ14320 339 aaKnown RBP17.44■□□□□ 0.38
SHMT2-212ENST00000554467 RRBP1Q9P2E9 1410 aaKnown RBP17.44■□□□□ 0.38
SHMT2-212ENST00000554467 FMN1Q68DA7 1419 aa17.43■□□□□ 0.38
SHMT2-212ENST00000554467 FYCO1Q9BQS8 1478 aa17.43■□□□□ 0.38
SHMT2-212ENST00000554467 SAMD9Q5K651 1589 aa17.43■□□□□ 0.38
SHMT2-212ENST00000554467 CHMP7Q8WUX9 453 aaPredicted RBP17.42■□□□□ 0.38
SHMT2-212ENST00000554467 IQGAP2Q13576 1575 aa17.4■□□□□ 0.38
SHMT2-212ENST00000554467 CFAP43Q8NDM7 1665 aa17.39■□□□□ 0.37
SHMT2-212ENST00000554467 MAP3K1Q13233 1512 aa17.39■□□□□ 0.37
SHMT2-212ENST00000554467 GRIN2AQ12879 1464 aa17.36■□□□□ 0.37
SHMT2-212ENST00000554467 MTUS2Q5JR59 1369 aa17.36■□□□□ 0.37
SHMT2-212ENST00000554467 LRRIQ1Q96JM4 1722 aa17.34■□□□□ 0.37
SHMT2-212ENST00000554467 GTF3C3Q9Y5Q9 886 aa17.34■□□□□ 0.37
SHMT2-212ENST00000554467 KIAA0586Q9BVV6 1533 aa17.3■□□□□ 0.36
SHMT2-212ENST00000554467 MAGI1Q96QZ7 1491 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-212ENST00000554467 SYNJ2O15056 1496 aa17.28■□□□□ 0.36
SHMT2-212ENST00000554467 DHX57Q6P158 1386 aaKnown RBP17.27■□□□□ 0.36
SHMT2-212ENST00000554467 CDK13Q14004 1512 aaKnown RBP17.27■□□□□ 0.36
SHMT2-212ENST00000554467 CEP170Q5SW79 1584 aa17.27■□□□□ 0.35
SHMT2-212ENST00000554467 DISP1Q96F81 1524 aa17.26■□□□□ 0.35
SHMT2-212ENST00000554467 UGGT2Q9NYU1 1516 aa17.25■□□□□ 0.35
SHMT2-212ENST00000554467 MAGI3Q5TCQ9 1506 aa17.25■□□□□ 0.35
SHMT2-212ENST00000554467 RAB3GAP2Q9H2M9 1393 aa17.24■□□□□ 0.35
SHMT2-212ENST00000554467 NCOA2Q15596 1464 aa17.23■□□□□ 0.35
SHMT2-212ENST00000554467 JPH4Q96JJ6 628 aa17.22■□□□□ 0.35
SHMT2-212ENST00000554467 KIAA0556O60303 1618 aa17.22■□□□□ 0.35
SHMT2-212ENST00000554467 EPRSP07814 1512 aaKnown RBP17.21■□□□□ 0.35
SHMT2-212ENST00000554467 FGD6Q6ZV73 1430 aa17.21■□□□□ 0.35
SHMT2-212ENST00000554467 HECW1Q76N89 1606 aa17.19■□□□□ 0.34
SHMT2-212ENST00000554467 SETD5Q9C0A6 1442 aa17.16■□□□□ 0.34
SHMT2-212ENST00000554467 CCDC18Q5T9S5 1454 aa17.16■□□□□ 0.34
SHMT2-212ENST00000554467 EHBP1L1Q8N3D4 1523 aa17.16■□□□□ 0.34
SHMT2-212ENST00000554467 PLB1Q6P1J6 1458 aa17.15■□□□□ 0.34
SHMT2-212ENST00000554467 NUP160Q12769 1436 aa17.15■□□□□ 0.34
SHMT2-212ENST00000554467 MYOM3Q5VTT5 1437 aa17.15■□□□□ 0.34
SHMT2-212ENST00000554467 SUPT6HQ7KZ85 1726 aaKnown RBP17.14■□□□□ 0.34
SHMT2-212ENST00000554467 CHIC2Q9UKJ5 165 aa17.14■□□□□ 0.33
SHMT2-212ENST00000554467 PTPRKQ15262 1439 aa17.14■□□□□ 0.33
SHMT2-212ENST00000554467 NUP153P49790 1475 aaKnown RBP17.14■□□□□ 0.33
SHMT2-212ENST00000554467 DIEXFQ68CQ4 756 aaKnown RBP17.09■□□□□ 0.33
SHMT2-212ENST00000554467 RAPGEF6Q8TEU7 1601 aa17.09■□□□□ 0.33
SHMT2-212ENST00000554467 CARMIL2Q6F5E8 1435 aa17.09■□□□□ 0.33
SHMT2-212ENST00000554467 ZNF316A6NFI3 1004 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-212ENST00000554467 RRP7BPQ9NSQ0 103 aa17.08■□□□□ 0.33
SHMT2-212ENST00000554467 SIN3AQ96ST3 1273 aa17.07■□□□□ 0.32
SHMT2-212ENST00000554467 PRG4Q92954 1404 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-212ENST00000554467 ZNF644Q9H582 1327 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-212ENST00000554467 PTPN23Q9H3S7 1636 aa17.06■□□□□ 0.32
SHMT2-212ENST00000554467 CHD1O14646 1710 aa17.05■□□□□ 0.32
SHMT2-212ENST00000554467 ARHGEF11O15085 1522 aa17.05■□□□□ 0.32
SHMT2-212ENST00000554467 CLSPNQ9HAW4 1339 aa17.05■□□□□ 0.32
SHMT2-212ENST00000554467 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.05■□□□□ 0.32
SHMT2-212ENST00000554467 MAPKBP1O60336 1514 aa17.04■□□□□ 0.32
SHMT2-212ENST00000554467 CENPBP07199 599 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-212ENST00000554467 CDK11AQ9UQ88 783 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-212ENST00000554467 YTHDC1Q96MU7 727 aaKnown RBP17.01■□□□□ 0.31
SHMT2-212ENST00000554467 ZNF777Q9ULD5 760 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-212ENST00000554467 NAIPQ13075 1403 aa16.97■□□□□ 0.31
SHMT2-212ENST00000554467 PTPRGP23470 1445 aa16.97■□□□□ 0.31
SHMT2-212ENST00000554467 HFM1A2PYH4 1435 aa16.96■□□□□ 0.31
SHMT2-212ENST00000554467 TROQ12816 1431 aaPredicted RBP16.95■□□□□ 0.3
SHMT2-212ENST00000554467 KIF14Q15058 1648 aa16.95■□□□□ 0.3
SHMT2-212ENST00000554467 ERCC6L2Q5T890 1561 aa16.95■□□□□ 0.3
SHMT2-212ENST00000554467 CFDP1Q9UEE9 299 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-212ENST00000554467 PLEKHD1A6NEE1 506 aa16.94■□□□□ 0.3
SHMT2-212ENST00000554467 TCOF1Q13428 1488 aaKnown RBP16.94■□□□□ 0.3
SHMT2-212ENST00000554467 TRIM52Q96A61 297 aa16.93■□□□□ 0.3
SHMT2-212ENST00000554467 ATP10BO94823 1461 aa16.93■□□□□ 0.3
SHMT2-212ENST00000554467 MIA2Q96PC5 1412 aa16.92■□□□□ 0.3
SHMT2-212ENST00000554467 ABCA8O94911 1581 aa16.92■□□□□ 0.3
SHMT2-212ENST00000554467 KDM6BO15054 1643 aa16.89■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms