RNA–Protein interactions for RNA: ENST00000553865.1

CCNK-203, Transcript of cyclin K, humanhuman

TSL 1 (best)

Gene CCNK, Length 5,627 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNK-203ENST00000553865 CFTRP13569 1480 aa12.46□□□□□ -0.42
CCNK-203ENST00000553865 NEFMP07197 916 aa12.44□□□□□ -0.42
CCNK-203ENST00000553865 MTUS2Q5JR59 1369 aa12.43□□□□□ -0.42
CCNK-203ENST00000553865 CC2D2AQ9P2K1 1620 aa12.43□□□□□ -0.42
CCNK-203ENST00000553865 RAPGEF2Q9Y4G8 1499 aa12.42□□□□□ -0.42
CCNK-203ENST00000553865 ARID3CA6NKF2 412 aa12.4□□□□□ -0.42
CCNK-203ENST00000553865 NPM1P06748 294 aaKnown RBP eCLIP12.4□□□□□ -0.42
CCNK-203ENST00000553865 CANXP27824 592 aaKnown RBP12.39□□□□□ -0.43
CCNK-203ENST00000553865 ZNF777Q9ULD5 760 aaPredicted RBP12.39□□□□□ -0.43
CCNK-203ENST00000553865 VPS8Q8N3P4 1428 aa12.39□□□□□ -0.43
CCNK-203ENST00000553865 FMN1Q68DA7 1419 aa12.37□□□□□ -0.43
CCNK-203ENST00000553865 CARMIL2Q6F5E8 1435 aa12.36□□□□□ -0.43
CCNK-203ENST00000553865 LAMC3Q9Y6N6 1575 aa12.35□□□□□ -0.43
CCNK-203ENST00000553865 NPM2Q86SE8 214 aaKnown RBP12.34□□□□□ -0.43
CCNK-203ENST00000553865 TOP2BQ02880 1626 aa12.34□□□□□ -0.43
CCNK-203ENST00000553865 ERICH3Q5RHP9 1530 aa12.33□□□□□ -0.44
CCNK-203ENST00000553865 KIF21BO75037 1637 aa12.32□□□□□ -0.44
CCNK-203ENST00000553865 HSP90AA1P07900 732 aaKnown RBP12.31□□□□□ -0.44
CCNK-203ENST00000553865 DDX10Q13206 875 aaKnown RBP12.31□□□□□ -0.44
CCNK-203ENST00000553865 FGD5Q6ZNL6 1462 aa12.31□□□□□ -0.44
CCNK-203ENST00000553865 BCL11AQ9H165 835 aa12.3□□□□□ -0.44
CCNK-203ENST00000553865 PLEKHD1A6NEE1 506 aa12.3□□□□□ -0.44
CCNK-203ENST00000553865 FKBP8Q14318 412 aa12.28□□□□□ -0.44
CCNK-203ENST00000553865 DNMBPQ6XZF7 1577 aa12.27□□□□□ -0.44
CCNK-203ENST00000553865 MRC2Q9UBG0 1479 aa12.27□□□□□ -0.44
CCNK-203ENST00000553865 SLC24A1O60721 1099 aa12.27□□□□□ -0.45
CCNK-203ENST00000553865 TNNT2P45379 298 aaPredicted RBP12.27□□□□□ -0.45
CCNK-203ENST00000553865 UPF2Q9HAU5 1272 aaKnown RBP12.26□□□□□ -0.45
CCNK-203ENST00000553865 HNRNPUQ00839 825 aaKnown RBP eCLIP12.26□□□□□ -0.45
CCNK-203ENST00000553865 TSPY4P0CV99 314 aa12.25□□□□□ -0.45
CCNK-203ENST00000553865 TSPY10P0CW01 314 aa12.25□□□□□ -0.45
CCNK-203ENST00000553865 CHIC2Q9UKJ5 165 aa12.25□□□□□ -0.45
CCNK-203ENST00000553865 GAPVD1Q14C86 1478 aa12.25□□□□□ -0.45
CCNK-203ENST00000553865 ESF1Q9H501 851 aaKnown RBP12.24□□□□□ -0.45
CCNK-203ENST00000553865 MIER1Q8N108 512 aa12.24□□□□□ -0.45
CCNK-203ENST00000553865 IFT140Q96RY7 1462 aa12.23□□□□□ -0.45
CCNK-203ENST00000553865 TDRD9Q8NDG6 1382 aaKnown RBP12.23□□□□□ -0.45
CCNK-203ENST00000553865 SYNJ1O43426 1573 aa12.22□□□□□ -0.45
CCNK-203ENST00000553865 ARHGAP35Q9NRY4 1499 aa12.21□□□□□ -0.46
CCNK-203ENST00000553865 FAM9BQ8IZU0 186 aa12.2□□□□□ -0.46
CCNK-203ENST00000553865 SCAF1Q9H7N4 1312 aaKnown RBP12.19□□□□□ -0.46
CCNK-203ENST00000553865 TOPBP1Q92547 1522 aa12.19□□□□□ -0.46
CCNK-203ENST00000553865 CCNB3Q8WWL7 1395 aa12.19□□□□□ -0.46
CCNK-203ENST00000553865 IGF1RP08069 1367 aa12.19□□□□□ -0.46
CCNK-203ENST00000553865 GRIN2BQ13224 1484 aa12.18□□□□□ -0.46
CCNK-203ENST00000553865 EIF4G2P78344 907 aaKnown RBP eCLIP12.17□□□□□ -0.46
CCNK-203ENST00000553865 BIVM-ERCC5R4GMW8 1640 aa12.17□□□□□ -0.46
CCNK-203ENST00000553865 EFCAB5A4FU69 1503 aa12.17□□□□□ -0.46
CCNK-203ENST00000553865 CUX1P39880 1505 aa12.17□□□□□ -0.46
CCNK-203ENST00000553865 CDK11BP21127 795 aaKnown RBP12.16□□□□□ -0.46
CCNK-203ENST00000553865 TMC1Q8TDI8 760 aa12.16□□□□□ -0.46
CCNK-203ENST00000553865 NBR1Q14596 966 aa12.16□□□□□ -0.46
CCNK-203ENST00000553865 STAG3Q9UJ98 1225 aa12.15□□□□□ -0.46
CCNK-203ENST00000553865 MRS2Q9HD23 443 aa12.14□□□□□ -0.47
CCNK-203ENST00000553865 CUL7Q14999 1698 aa12.14□□□□□ -0.47
CCNK-203ENST00000553865 CCDC18Q5T9S5 1454 aa12.14□□□□□ -0.47
CCNK-203ENST00000553865 CFDP1Q9UEE9 299 aaPredicted RBP12.14□□□□□ -0.47
CCNK-203ENST00000553865 ABCA10Q8WWZ4 1543 aa12.13□□□□□ -0.47
CCNK-203ENST00000553865 TIMELESSQ9UNS1 1208 aa12.13□□□□□ -0.47
CCNK-203ENST00000553865 RRP7BPQ9NSQ0 103 aa12.13□□□□□ -0.47
CCNK-203ENST00000553865 PRXQ9BXM0 1461 aa12.12□□□□□ -0.47
CCNK-203ENST00000553865 CHGAP10645 457 aaKnown RBP12.12□□□□□ -0.47
CCNK-203ENST00000553865 ARXQ96QS3 562 aa12.11□□□□□ -0.47
CCNK-203ENST00000553865 RUSC2Q8N2Y8 1516 aa12.11□□□□□ -0.47
CCNK-203ENST00000553865 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.11□□□□□ -0.47
CCNK-203ENST00000553865 POLA1P09884 1462 aaPredicted RBP12.1□□□□□ -0.47
CCNK-203ENST00000553865 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.1□□□□□ -0.47
CCNK-203ENST00000553865 TRIM44Q96DX7 344 aaPredicted RBP12.09□□□□□ -0.47
CCNK-203ENST00000553865 RAD54L2Q9Y4B4 1467 aa12.09□□□□□ -0.47
CCNK-203ENST00000553865 CCDC136Q96JN2 1154 aa12.09□□□□□ -0.47
CCNK-203ENST00000553865 RSPH4AQ5TD94 716 aa12.08□□□□□ -0.48
CCNK-203ENST00000553865 ANP32EQ9BTT0 268 aa12.08□□□□□ -0.48
CCNK-203ENST00000553865 KDM2AQ9Y2K7 1162 aa12.07□□□□□ -0.48
CCNK-203ENST00000553865 WDR43Q15061 677 aaKnown RBP eCLIP12.07□□□□□ -0.48
CCNK-203ENST00000553865 HIRIP3Q9BW71 556 aaPredicted RBP12.06□□□□□ -0.48
CCNK-203ENST00000553865 PRDM2Q13029 1718 aa12.06□□□□□ -0.48
CCNK-203ENST00000553865 NESP48681 1621 aa12.05□□□□□ -0.48
CCNK-203ENST00000553865 FHOD3Q2V2M9 1422 aa12.05□□□□□ -0.48
CCNK-203ENST00000553865 SETD5Q9C0A6 1442 aa12.04□□□□□ -0.48
CCNK-203ENST00000553865 FYCO1Q9BQS8 1478 aa12.04□□□□□ -0.48
CCNK-203ENST00000553865 CASKIN1Q8WXD9 1431 aa12.03□□□□□ -0.48
CCNK-203ENST00000553865 JPH4Q96JJ6 628 aa12.02□□□□□ -0.48
CCNK-203ENST00000553865 SALL2Q9Y467 1007 aaPredicted RBP12.02□□□□□ -0.49
CCNK-203ENST00000553865 ERICH6BQ5W0A0 696 aa12.01□□□□□ -0.49
CCNK-203ENST00000553865 NCLP19338 710 aaKnown RBP11.99□□□□□ -0.49
CCNK-203ENST00000553865 MAGI1Q96QZ7 1491 aaPredicted RBP11.99□□□□□ -0.49
CCNK-203ENST00000553865 KANK1Q14678 1352 aa11.98□□□□□ -0.49
CCNK-203ENST00000553865 PTPRGP23470 1445 aa11.98□□□□□ -0.49
CCNK-203ENST00000553865 ANKRD30AQ9BXX3 1397 aa11.97□□□□□ -0.49
CCNK-203ENST00000553865 WDR97A6NE52 1622 aa11.97□□□□□ -0.49
CCNK-203ENST00000553865 SIN3AQ96ST3 1273 aa11.97□□□□□ -0.49
CCNK-203ENST00000553865 CDCA8Q53HL2 280 aa11.97□□□□□ -0.49
CCNK-203ENST00000553865 DDRGK1Q96HY6 314 aa11.97□□□□□ -0.49
CCNK-203ENST00000553865 KCNH8Q96L42 1107 aa11.97□□□□□ -0.49
CCNK-203ENST00000553865 AQRO60306 1485 aaKnown RBP eCLIP11.96□□□□□ -0.491e-6■■■■□ 20
CCNK-203ENST00000553865 GOLGA6L22H0YM25 854 aa11.96□□□□□ -0.49
CCNK-203ENST00000553865 EFCAB2Q5VUJ9 269 aa11.95□□□□□ -0.5
CCNK-203ENST00000553865 BECN1Q14457 450 aa11.95□□□□□ -0.5
CCNK-203ENST00000553865 HECW1Q76N89 1606 aa11.95□□□□□ -0.5
CCNK-203ENST00000553865 MAP3K1Q13233 1512 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms