RNA–Protein interactions for RNA: ENST00000553865.1

CCNK-203, Transcript of cyclin K, humanhuman

TSL 1 (best)

Gene CCNK, Length 5,627 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNK-203ENST00000553865 NISCHQ9Y2I1 1504 aa17■□□□□ 0.31
CCNK-203ENST00000553865 DCAF8L2P0C7V8 631 aa15.47■□□□□ 0.07
CCNK-203ENST00000553865 SUPT5HO00267 1087 aaKnown RBP14.93□□□□□ -0.02
CCNK-203ENST00000553865 PELP1Q8IZL8 1130 aaKnown RBP14.86□□□□□ -0.03
CCNK-203ENST00000553865 SHROOM4Q9ULL8 1493 aa14.75□□□□□ -0.05
CCNK-203ENST00000553865 CCDC180Q9P1Z9 1646 aa14.67□□□□□ -0.06
CCNK-203ENST00000553865 MYT1Q01538 1121 aa14.25□□□□□ -0.13
CCNK-203ENST00000553865 ERICH6Q7L0X2 663 aa14.24□□□□□ -0.13
CCNK-203ENST00000553865 ZCCHC6Q5VYS8 1495 aaKnown RBP14.21□□□□□ -0.14
CCNK-203ENST00000553865 CCER1Q8TC90 406 aaPredicted RBP14.16□□□□□ -0.14
CCNK-203ENST00000553865 EHMT2Q96KQ7 1210 aa14.15□□□□□ -0.14
CCNK-203ENST00000553865 APLP2Q06481 763 aa14.12□□□□□ -0.15
CCNK-203ENST00000553865 ABCC9O60706 1549 aa14.1□□□□□ -0.15
CCNK-203ENST00000553865 DCAF1Q9Y4B6 1507 aa14□□□□□ -0.17
CCNK-203ENST00000553865 FAM9AQ8IZU1 332 aaPredicted RBP13.99□□□□□ -0.17
CCNK-203ENST00000553865 PCGF6Q9BYE7 350 aa13.99□□□□□ -0.17
CCNK-203ENST00000553865 CENPBP07199 599 aaPredicted RBP13.94□□□□□ -0.18
CCNK-203ENST00000553865 TRIM41Q8WV44 630 aa13.93□□□□□ -0.18
CCNK-203ENST00000553865 NACADO15069 1562 aa13.91□□□□□ -0.18
CCNK-203ENST00000553865 ZEB1P37275 1124 aaPredicted RBP13.9□□□□□ -0.18
CCNK-203ENST00000553865 RB1CC1Q8TDY2 1594 aa13.88□□□□□ -0.19
CCNK-203ENST00000553865 MYO15BQ96JP2 1530 aa13.78□□□□□ -0.2
CCNK-203ENST00000553865 TTBK1Q5TCY1 1321 aaPredicted RBP13.72□□□□□ -0.21
CCNK-203ENST00000553865 SCRIBQ14160 1630 aa13.69□□□□□ -0.22
CCNK-203ENST00000553865 NEFLP07196 543 aa13.66□□□□□ -0.22
CCNK-203ENST00000553865 UBTFP17480 764 aaKnown RBP13.64□□□□□ -0.23
CCNK-203ENST00000553865 TRIM26Q12899 539 aaPredicted RBP13.58□□□□□ -0.24
CCNK-203ENST00000553865 YTHDC1Q96MU7 727 aaKnown RBP13.58□□□□□ -0.24
CCNK-203ENST00000553865 RANGAP1P46060 587 aaPredicted RBP13.57□□□□□ -0.24
CCNK-203ENST00000553865 CHIC1Q5VXU3 224 aa13.56□□□□□ -0.24
CCNK-203ENST00000553865 PABPN1Q86U42 306 aaKnown RBP eCLIP13.5□□□□□ -0.25
CCNK-203ENST00000553865 HRCP23327 699 aa13.48□□□□□ -0.25
CCNK-203ENST00000553865 ATP1B4Q9UN42 357 aaPredicted RBP13.46□□□□□ -0.25
CCNK-203ENST00000553865 DAXXQ9UER7 740 aaPredicted RBP13.46□□□□□ -0.25
CCNK-203ENST00000553865 LOC105371045A0A1W2PR82 267 aa13.38□□□□□ -0.27
CCNK-203ENST00000553865 BAZ1AQ9NRL2 1556 aaPredicted RBP13.37□□□□□ -0.27
CCNK-203ENST00000553865 PPARGC1BQ86YN6 1023 aaKnown RBP13.35□□□□□ -0.27
CCNK-203ENST00000553865 RSF1Q96T23 1441 aaPredicted RBP13.28□□□□□ -0.28
CCNK-203ENST00000553865 RTL5Q5HYW3 569 aaPredicted RBP13.21□□□□□ -0.29
CCNK-203ENST00000553865 BAZ1BQ9UIG0 1483 aaKnown RBP13.16□□□□□ -0.3
CCNK-203ENST00000553865 SMARCA2P51531 1590 aa13.15□□□□□ -0.3
CCNK-203ENST00000553865 HNRNPUL2Q1KMD3 747 aaKnown RBP13.12□□□□□ -0.31
CCNK-203ENST00000553865 EEA1Q15075 1411 aa13.1□□□□□ -0.31
CCNK-203ENST00000553865 ITGAEP38570 1179 aa13.09□□□□□ -0.31
CCNK-203ENST00000553865 ZNF316A6NFI3 1004 aaPredicted RBP13.08□□□□□ -0.32
CCNK-203ENST00000553865 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.03□□□□□ -0.32
CCNK-203ENST00000553865 TOP2AP11388 1531 aaKnown RBP13.01□□□□□ -0.33
CCNK-203ENST00000553865 MYT1LQ9UL68 1186 aa13.01□□□□□ -0.33
CCNK-203ENST00000553865 CSRNP3Q8WYN3 585 aa13.01□□□□□ -0.33
CCNK-203ENST00000553865 CECR2Q9BXF3 1484 aa13.01□□□□□ -0.33
CCNK-203ENST00000553865 DIEXFQ68CQ4 756 aaKnown RBP12.99□□□□□ -0.33
CCNK-203ENST00000553865 MROH2BQ7Z745 1585 aa12.98□□□□□ -0.33
CCNK-203ENST00000553865 SMARCA4P51532 1647 aa12.97□□□□□ -0.33
CCNK-203ENST00000553865 CLSPNQ9HAW4 1339 aa12.92□□□□□ -0.34
CCNK-203ENST00000553865 POLR3GLQ9BT43 218 aa12.92□□□□□ -0.34
CCNK-203ENST00000553865 WRNQ14191 1432 aaPredicted RBP eCLIP12.91□□□□□ -0.34
CCNK-203ENST00000553865 FAM50AQ14320 339 aaKnown RBP12.87□□□□□ -0.35
CCNK-203ENST00000553865 CCDC88BA6NC98 1476 aa12.84□□□□□ -0.35
CCNK-203ENST00000553865 ATAD2BQ9ULI0 1458 aa12.84□□□□□ -0.35
CCNK-203ENST00000553865 WIZO95785 1651 aa12.82□□□□□ -0.36
CCNK-203ENST00000553865 GOLGA3Q08378 1498 aa12.81□□□□□ -0.36
CCNK-203ENST00000553865 KIF27Q86VH2 1401 aa12.8□□□□□ -0.36
CCNK-203ENST00000553865 CEP164Q9UPV0 1460 aa12.78□□□□□ -0.36
CCNK-203ENST00000553865 GLIPR1L2Q4G1C9 344 aa12.75□□□□□ -0.37
CCNK-203ENST00000553865 TRIM52Q96A61 297 aa12.75□□□□□ -0.37
CCNK-203ENST00000553865 PDS5BQ9NTI5 1447 aa12.74□□□□□ -0.37
CCNK-203ENST00000553865 NCAPD3P42695 1498 aa12.73□□□□□ -0.37
CCNK-203ENST00000553865 NEUROD1Q13562 356 aa12.73□□□□□ -0.37
CCNK-203ENST00000553865 SLC4A1APQ9BWU0 796 aaKnown RBP12.72□□□□□ -0.37
CCNK-203ENST00000553865 TNIKQ9UKE5 1360 aa12.7□□□□□ -0.38
CCNK-203ENST00000553865 CDK11AQ9UQ88 783 aaPredicted RBP12.7□□□□□ -0.38
CCNK-203ENST00000553865 ABCC8Q09428 1581 aa12.7□□□□□ -0.38
CCNK-203ENST00000553865 EIF5BO60841 1220 aaKnown RBP12.69□□□□□ -0.38
CCNK-203ENST00000553865 HMGXB3Q12766 1538 aa12.68□□□□□ -0.38
CCNK-203ENST00000553865 ANP32CO43423 234 aa12.68□□□□□ -0.38
CCNK-203ENST00000553865 CADPSQ9ULU8 1353 aa12.68□□□□□ -0.38
CCNK-203ENST00000553865 CNGB1Q14028 1251 aaPredicted RBP12.68□□□□□ -0.38
CCNK-203ENST00000553865 EIF4G1Q04637 1599 aaKnown RBP12.67□□□□□ -0.38
CCNK-203ENST00000553865 GTF3C3Q9Y5Q9 886 aa12.67□□□□□ -0.38
CCNK-203ENST00000553865 ACIN1Q9UKV3 1341 aaKnown RBP12.65□□□□□ -0.38
CCNK-203ENST00000553865 CLIP1P30622 1438 aa12.65□□□□□ -0.38
CCNK-203ENST00000553865 ERCC6Q03468 1493 aa12.63□□□□□ -0.39
CCNK-203ENST00000553865 ZBTB47Q9UFB7 747 aaPredicted RBP12.62□□□□□ -0.39
CCNK-203ENST00000553865 FBLN2P98095 1184 aa12.59□□□□□ -0.39
CCNK-203ENST00000553865 CEP162Q5TB80 1403 aa12.59□□□□□ -0.39
CCNK-203ENST00000553865 BICRAQ9NZM4 1560 aa12.58□□□□□ -0.4
CCNK-203ENST00000553865 PEG3Q9GZU2 1588 aa12.57□□□□□ -0.4
CCNK-203ENST00000553865 P3H3Q8IVL6 736 aa12.57□□□□□ -0.4
CCNK-203ENST00000553865 ANP32BQ92688 251 aaKnown RBP12.56□□□□□ -0.4
CCNK-203ENST00000553865 BCANQ96GW7 911 aa12.56□□□□□ -0.4
CCNK-203ENST00000553865 CUX2O14529 1486 aa12.54□□□□□ -0.4
CCNK-203ENST00000553865 FHAD1B1AJZ9 1412 aa12.53□□□□□ -0.4
CCNK-203ENST00000553865 ANP32AP39687 249 aaKnown RBP12.53□□□□□ -0.4
CCNK-203ENST00000553865 CHMP7Q8WUX9 453 aaPredicted RBP12.53□□□□□ -0.4
CCNK-203ENST00000553865 ZNF326Q5BKZ1 582 aaKnown RBP12.51□□□□□ -0.41
CCNK-203ENST00000553865 CARMIL1Q5VZK9 1371 aa12.5□□□□□ -0.41
CCNK-203ENST00000553865 UNC13AQ9UPW8 1703 aa12.5□□□□□ -0.41
CCNK-203ENST00000553865 FANCD2Q9BXW9 1451 aa12.49□□□□□ -0.41
CCNK-203ENST00000553865 SOGA1O94964 1423 aa12.48□□□□□ -0.41
CCNK-203ENST00000553865 TONSLQ96HA7 1378 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms