RNA–Protein interactions for RNA: ENST00000552800.2

TMEM116-216, Transcript of transmembrane protein 116, humanhuman

TSL 3

Gene TMEM116, Length 485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-216ENST00000552800 POLA1P09884 1462 aaPredicted RBP15.78■□□□□ 0.12
TMEM116-216ENST00000552800 IGF1RP08069 1367 aa15.76■□□□□ 0.11
TMEM116-216ENST00000552800 KIF21AQ7Z4S6 1674 aa15.76■□□□□ 0.11
TMEM116-216ENST00000552800 MRC2Q9UBG0 1479 aa15.71■□□□□ 0.11
TMEM116-216ENST00000552800 WDR97A6NE52 1622 aa15.7■□□□□ 0.1
TMEM116-216ENST00000552800 CUX2O14529 1486 aa15.7■□□□□ 0.1
TMEM116-216ENST00000552800 WDR62O43379 1518 aa15.68■□□□□ 0.1
TMEM116-216ENST00000552800 RAPGEF2Q9Y4G8 1499 aa15.68■□□□□ 0.1
TMEM116-216ENST00000552800 MYCNP04198 464 aaPredicted RBP15.67■□□□□ 0.1
TMEM116-216ENST00000552800 TARBP1Q13395 1621 aaKnown RBP15.66■□□□□ 0.1
TMEM116-216ENST00000552800 RAD54L2Q9Y4B4 1467 aa15.65■□□□□ 0.1
TMEM116-216ENST00000552800 CEP162Q5TB80 1403 aa15.63■□□□□ 0.09
TMEM116-216ENST00000552800 CARMIL1Q5VZK9 1371 aa15.62■□□□□ 0.09
TMEM116-216ENST00000552800 ABCA5Q8WWZ7 1642 aa15.62■□□□□ 0.09
TMEM116-216ENST00000552800 UBTFP17480 764 aaKnown RBP15.61■□□□□ 0.09
TMEM116-216ENST00000552800 CUL7Q14999 1698 aa15.59■□□□□ 0.09
TMEM116-216ENST00000552800 IFT140Q96RY7 1462 aa15.59■□□□□ 0.09
TMEM116-216ENST00000552800 GAPVD1Q14C86 1478 aa15.57■□□□□ 0.08
TMEM116-216ENST00000552800 THOC2Q8NI27 1593 aaKnown RBP15.56■□□□□ 0.08
TMEM116-216ENST00000552800 ABCB7O75027 752 aa15.53■□□□□ 0.08
TMEM116-216ENST00000552800 CLIP1P30622 1438 aa15.51■□□□□ 0.07
TMEM116-216ENST00000552800 TRHP20396 242 aaPredicted RBP15.51■□□□□ 0.07
TMEM116-216ENST00000552800 ZNF219Q9P2Y4 722 aaPredicted RBP15.5■□□□□ 0.07
TMEM116-216ENST00000552800 TDRD9Q8NDG6 1382 aaKnown RBP15.49■□□□□ 0.07
TMEM116-216ENST00000552800 ERCC6Q03468 1493 aa15.49■□□□□ 0.07
TMEM116-216ENST00000552800 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.47■□□□□ 0.07
TMEM116-216ENST00000552800 HNRNPUL2Q1KMD3 747 aaKnown RBP15.47■□□□□ 0.07
TMEM116-216ENST00000552800 APLP2Q06481 763 aa15.46■□□□□ 0.07
TMEM116-216ENST00000552800 GRIN2BQ13224 1484 aa15.46■□□□□ 0.06
TMEM116-216ENST00000552800 VPS8Q8N3P4 1428 aa15.45■□□□□ 0.06
TMEM116-216ENST00000552800 TRIM26Q12899 539 aaPredicted RBP15.45■□□□□ 0.06
TMEM116-216ENST00000552800 FHAD1B1AJZ9 1412 aa15.44■□□□□ 0.06
TMEM116-216ENST00000552800 SAMD1Q6SPF0 538 aaPredicted RBP15.43■□□□□ 0.06
TMEM116-216ENST00000552800 RBM42Q9BTD8 480 aaKnown RBP15.43■□□□□ 0.06
TMEM116-216ENST00000552800 CHRDL2Q6WN34 429 aa15.41■□□□□ 0.06
TMEM116-216ENST00000552800 PBRM1Q86U86 1689 aa15.41■□□□□ 0.06
TMEM116-216ENST00000552800 AQRO60306 1485 aaKnown RBP eCLIP15.4■□□□□ 0.06
TMEM116-216ENST00000552800 ARHGAP35Q9NRY4 1499 aa15.4■□□□□ 0.06
TMEM116-216ENST00000552800 ARAP1Q96P48 1450 aa15.38■□□□□ 0.05
TMEM116-216ENST00000552800 ZNF608Q9ULD9 1512 aaPredicted RBP15.38■□□□□ 0.05
TMEM116-216ENST00000552800 ADAMTS12P58397 1594 aa15.36■□□□□ 0.05
TMEM116-216ENST00000552800 EFCAB5A4FU69 1503 aa15.36■□□□□ 0.05
TMEM116-216ENST00000552800 MAGI1Q96QZ7 1491 aaPredicted RBP15.35■□□□□ 0.05
TMEM116-216ENST00000552800 MAP3K1Q13233 1512 aa15.35■□□□□ 0.05
TMEM116-216ENST00000552800 CTTNBP2Q8WZ74 1663 aa15.35■□□□□ 0.05
TMEM116-216ENST00000552800 ATXN8OSP0DMR3 200 aa15.33■□□□□ 0.04
TMEM116-216ENST00000552800 EIF4G3O43432 1585 aaKnown RBP15.32■□□□□ 0.04
TMEM116-216ENST00000552800 SP7Q8TDD2 431 aaPredicted RBP15.31■□□□□ 0.04
TMEM116-216ENST00000552800 ATF5Q9Y2D1 282 aaPredicted RBP15.29■□□□□ 0.04
TMEM116-216ENST00000552800 SAMD9Q5K651 1589 aa15.28■□□□□ 0.04
TMEM116-216ENST00000552800 KIAA0586Q9BVV6 1533 aa15.27■□□□□ 0.03
TMEM116-216ENST00000552800 SYNJ2O15056 1496 aa15.27■□□□□ 0.03
TMEM116-216ENST00000552800 PCGF6Q9BYE7 350 aa15.26■□□□□ 0.03
TMEM116-216ENST00000552800 UGGT2Q9NYU1 1516 aa15.25■□□□□ 0.03
TMEM116-216ENST00000552800 SNAPC4Q5SXM2 1469 aa15.25■□□□□ 0.03
TMEM116-216ENST00000552800 GRIN2AQ12879 1464 aa15.24■□□□□ 0.03
TMEM116-216ENST00000552800 NUP160Q12769 1436 aa15.22■□□□□ 0.03
TMEM116-216ENST00000552800 FMN1Q68DA7 1419 aa15.21■□□□□ 0.03
TMEM116-216ENST00000552800 IQGAP2Q13576 1575 aa15.2■□□□□ 0.02
TMEM116-216ENST00000552800 CASKIN1Q8WXD9 1431 aa15.2■□□□□ 0.02
TMEM116-216ENST00000552800 FYCO1Q9BQS8 1478 aa15.16■□□□□ 0.02
TMEM116-216ENST00000552800 CHMP7Q8WUX9 453 aaPredicted RBP15.13■□□□□ 0.01
TMEM116-216ENST00000552800 TIAM1Q13009 1591 aa15.11■□□□□ 0.01
TMEM116-216ENST00000552800 DISP1Q96F81 1524 aa15.11■□□□□ 0.01
TMEM116-216ENST00000552800 CEP170Q5SW79 1584 aa15.11■□□□□ 0.01
TMEM116-216ENST00000552800 FHOD3Q2V2M9 1422 aa15.1■□□□□ 0.01
TMEM116-216ENST00000552800 RANGAP1P46060 587 aaPredicted RBP15.08■□□□□ 0
TMEM116-216ENST00000552800 KANK4Q5T7N3 995 aaPredicted RBP15.08■□□□□ 0
TMEM116-216ENST00000552800 LRRC9Q6ZRR7 1453 aa15.08■□□□□ 0
TMEM116-216ENST00000552800 CFAP43Q8NDM7 1665 aa15.07■□□□□ 0
TMEM116-216ENST00000552800 RRBP1Q9P2E9 1410 aaKnown RBP15.07■□□□□ 0
TMEM116-216ENST00000552800 PCF11O94913 1555 aaKnown RBP15.06■□□□□ 0
TMEM116-216ENST00000552800 JPH4Q96JJ6 628 aa15.05■□□□□ -0
TMEM116-216ENST00000552800 KIAA0556O60303 1618 aa15.05■□□□□ -0
TMEM116-216ENST00000552800 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.03■□□□□ -0
TMEM116-216ENST00000552800 PPARGC1BQ86YN6 1023 aaKnown RBP15.03■□□□□ -0
TMEM116-216ENST00000552800 HRCP23327 699 aa15.02■□□□□ -0
TMEM116-216ENST00000552800 CCDC18Q5T9S5 1454 aa15.01□□□□□ -0.01
TMEM116-216ENST00000552800 P3H3Q8IVL6 736 aa15.01□□□□□ -0.01
TMEM116-216ENST00000552800 CARMIL2Q6F5E8 1435 aa15□□□□□ -0.01
TMEM116-216ENST00000552800 SHROOM2Q13796 1616 aa15□□□□□ -0.01
TMEM116-216ENST00000552800 LRRIQ1Q96JM4 1722 aa14.97□□□□□ -0.01
TMEM116-216ENST00000552800 HECW1Q76N89 1606 aa14.96□□□□□ -0.01
TMEM116-216ENST00000552800 ARHGEF11O15085 1522 aa14.96□□□□□ -0.02
TMEM116-216ENST00000552800 CHD1O14646 1710 aa14.95□□□□□ -0.02
TMEM116-216ENST00000552800 EPRSP07814 1512 aaKnown RBP14.95□□□□□ -0.02
TMEM116-216ENST00000552800 ZEB1P37275 1124 aaPredicted RBP14.93□□□□□ -0.02
TMEM116-216ENST00000552800 POLA2Q14181 598 aa14.93□□□□□ -0.02
TMEM116-216ENST00000552800 CCNB3Q8WWL7 1395 aa14.93□□□□□ -0.02
TMEM116-216ENST00000552800 CLASP1Q7Z460 1538 aa14.92□□□□□ -0.02
TMEM116-216ENST00000552800 FBLN2P98095 1184 aa14.92□□□□□ -0.02
TMEM116-216ENST00000552800 EHBP1L1Q8N3D4 1523 aa14.91□□□□□ -0.02
TMEM116-216ENST00000552800 RAPGEF6Q8TEU7 1601 aa14.9□□□□□ -0.02
TMEM116-216ENST00000552800 ABCA8O94911 1581 aa14.9□□□□□ -0.02
TMEM116-216ENST00000552800 NUP153P49790 1475 aaKnown RBP14.89□□□□□ -0.03
TMEM116-216ENST00000552800 AKT1S1Q96B36 256 aa14.89□□□□□ -0.03
TMEM116-216ENST00000552800 PHLDB1Q86UU1 1377 aa14.88□□□□□ -0.03
TMEM116-216ENST00000552800 PRG4Q92954 1404 aaPredicted RBP14.87□□□□□ -0.03
TMEM116-216ENST00000552800 PIP4P2Q8N4L2 257 aa14.86□□□□□ -0.03
TMEM116-216ENST00000552800 MTUS2Q5JR59 1369 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms