RNA–Protein interactions for RNA: ENST00000552800.2

TMEM116-216, Transcript of transmembrane protein 116, humanhuman

TSL 3

Gene TMEM116, Length 485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-216ENST00000552800 AEBP2Q6ZN18 517 aaPredicted RBP27■■□□□ 1.91
TMEM116-216ENST00000552800 CHIC1Q5VXU3 224 aa25.23■■□□□ 1.63
TMEM116-216ENST00000552800 SENP3Q9H4L4 574 aaPredicted RBP23.19■■□□□ 1.3
TMEM116-216ENST00000552800 PHF23Q9BUL5 403 aaPredicted RBP22.74■■□□□ 1.23
TMEM116-216ENST00000552800 NISCHQ9Y2I1 1504 aa22.32■■□□□ 1.16
TMEM116-216ENST00000552800 FOXD1Q16676 465 aa21.69■■□□□ 1.06
TMEM116-216ENST00000552800 POTEDQ86YR6 584 aa21.59■■□□□ 1.05
TMEM116-216ENST00000552800 MSH5O43196 834 aa20.66■□□□□ 0.9
TMEM116-216ENST00000552800 PIAS4Q8N2W9 510 aaPredicted RBP20.05■□□□□ 0.8
TMEM116-216ENST00000552800 PLPPR3Q6T4P5 718 aa20.01■□□□□ 0.79
TMEM116-216ENST00000552800 PPP6R1Q9UPN7 881 aa19.62■□□□□ 0.73
TMEM116-216ENST00000552800 ADRA2BP18089 450 aa19.49■□□□□ 0.71
TMEM116-216ENST00000552800 CCDC180Q9P1Z9 1646 aa19.47■□□□□ 0.71
TMEM116-216ENST00000552800 ZCCHC6Q5VYS8 1495 aaKnown RBP18.75■□□□□ 0.59
TMEM116-216ENST00000552800 DCAF1Q9Y4B6 1507 aa18.64■□□□□ 0.57
TMEM116-216ENST00000552800 MYO15BQ96JP2 1530 aa18.46■□□□□ 0.55
TMEM116-216ENST00000552800 DMRT2Q9Y5R5 561 aa18.26■□□□□ 0.51
TMEM116-216ENST00000552800 CACNB1Q02641 598 aaPredicted RBP18.21■□□□□ 0.51
TMEM116-216ENST00000552800 MAPK8IP2Q13387 824 aaPredicted RBP18.16■□□□□ 0.5
TMEM116-216ENST00000552800 NACADO15069 1562 aa18.15■□□□□ 0.5
TMEM116-216ENST00000552800 ABCC9O60706 1549 aa18.08■□□□□ 0.49
TMEM116-216ENST00000552800 DCAF8L2P0C7V8 631 aa18.05■□□□□ 0.48
TMEM116-216ENST00000552800 RB1CC1Q8TDY2 1594 aa17.88■□□□□ 0.45
TMEM116-216ENST00000552800 SCAF1Q9H7N4 1312 aaKnown RBP17.87■□□□□ 0.45
TMEM116-216ENST00000552800 SHROOM4Q9ULL8 1493 aa17.84■□□□□ 0.45
TMEM116-216ENST00000552800 PPP4R3CPQ6ZMV5 832 aa17.66■□□□□ 0.42
TMEM116-216ENST00000552800 SCRIBQ14160 1630 aa17.63■□□□□ 0.41
TMEM116-216ENST00000552800 RNF39Q9H2S5 420 aa17.55■□□□□ 0.4
TMEM116-216ENST00000552800 UNC13AQ9UPW8 1703 aa17.48■□□□□ 0.39
TMEM116-216ENST00000552800 DCAF8L1A6NGE4 600 aa17.47■□□□□ 0.39
TMEM116-216ENST00000552800 BICRAQ9NZM4 1560 aa17.37■□□□□ 0.37
TMEM116-216ENST00000552800 KCNA4P22459 653 aa17.36■□□□□ 0.37
TMEM116-216ENST00000552800 RSF1Q96T23 1441 aaPredicted RBP17.31■□□□□ 0.36
TMEM116-216ENST00000552800 SUPT5HO00267 1087 aaKnown RBP17.27■□□□□ 0.36
TMEM116-216ENST00000552800 HOXD11P31277 338 aaPredicted RBP17.26■□□□□ 0.35
TMEM116-216ENST00000552800 C1QBPQ07021 282 aaKnown RBP17.25■□□□□ 0.35
TMEM116-216ENST00000552800 CECR2Q9BXF3 1484 aa17.23■□□□□ 0.35
TMEM116-216ENST00000552800 BAZ1AQ9NRL2 1556 aaPredicted RBP17.21■□□□□ 0.35
TMEM116-216ENST00000552800 NCBP3Q53F19 620 aaKnown RBP17.2■□□□□ 0.34
TMEM116-216ENST00000552800 MROH2BQ7Z745 1585 aa17.15■□□□□ 0.34
TMEM116-216ENST00000552800 CNKSR2Q8WXI2 1034 aa17.13■□□□□ 0.33
TMEM116-216ENST00000552800 SMARCA4P51532 1647 aa17.09■□□□□ 0.33
TMEM116-216ENST00000552800 PABPN1Q86U42 306 aaKnown RBP eCLIP17.06■□□□□ 0.32
TMEM116-216ENST00000552800 PEG3Q9GZU2 1588 aa17.05■□□□□ 0.32
TMEM116-216ENST00000552800 NPM3O75607 178 aaKnown RBP16.98■□□□□ 0.31
TMEM116-216ENST00000552800 WIZO95785 1651 aa16.97■□□□□ 0.31
TMEM116-216ENST00000552800 RNF216Q9NWF9 866 aaPredicted RBP16.89■□□□□ 0.29
TMEM116-216ENST00000552800 DNAJC5BQ9UF47 199 aa16.89■□□□□ 0.29
TMEM116-216ENST00000552800 TOP2AP11388 1531 aaKnown RBP16.88■□□□□ 0.29
TMEM116-216ENST00000552800 SMARCA2P51531 1590 aa16.84■□□□□ 0.29
TMEM116-216ENST00000552800 ATAD2BQ9ULI0 1458 aa16.83■□□□□ 0.28
TMEM116-216ENST00000552800 EIF4G1Q04637 1599 aaKnown RBP16.79■□□□□ 0.28
TMEM116-216ENST00000552800 NCAPD3P42695 1498 aa16.79■□□□□ 0.28
TMEM116-216ENST00000552800 POTEHQ6S545 545 aa16.75■□□□□ 0.27
TMEM116-216ENST00000552800 HMGXB3Q12766 1538 aa16.7■□□□□ 0.26
TMEM116-216ENST00000552800 CCDC88BA6NC98 1476 aa16.7■□□□□ 0.26
TMEM116-216ENST00000552800 BAZ1BQ9UIG0 1483 aaKnown RBP16.65■□□□□ 0.26
TMEM116-216ENST00000552800 SLC4A1APQ9BWU0 796 aaKnown RBP16.53■□□□□ 0.24
TMEM116-216ENST00000552800 CC2D2AQ9P2K1 1620 aa16.48■□□□□ 0.23
TMEM116-216ENST00000552800 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.4■□□□□ 0.22
TMEM116-216ENST00000552800 CFTRP13569 1480 aa16.38■□□□□ 0.21
TMEM116-216ENST00000552800 TRIM41Q8WV44 630 aa16.37■□□□□ 0.21
TMEM116-216ENST00000552800 CADPSQ9ULU8 1353 aa16.28■□□□□ 0.2
TMEM116-216ENST00000552800 WRNQ14191 1432 aaPredicted RBP eCLIP16.24■□□□□ 0.19
TMEM116-216ENST00000552800 PRDM2Q13029 1718 aa16.24■□□□□ 0.19
TMEM116-216ENST00000552800 ABCC8Q09428 1581 aa16.21■□□□□ 0.18
TMEM116-216ENST00000552800 EHMT2Q96KQ7 1210 aa16.19■□□□□ 0.18
TMEM116-216ENST00000552800 EEA1Q15075 1411 aa16.17■□□□□ 0.18
TMEM116-216ENST00000552800 TOP2BQ02880 1626 aa16.16■□□□□ 0.18
TMEM116-216ENST00000552800 BIVM-ERCC5R4GMW8 1640 aa16.14■□□□□ 0.17
TMEM116-216ENST00000552800 DSG3P32926 999 aa16.13■□□□□ 0.17
TMEM116-216ENST00000552800 LAMC3Q9Y6N6 1575 aa16.13■□□□□ 0.17
TMEM116-216ENST00000552800 SYNJ1O43426 1573 aa16.12■□□□□ 0.17
TMEM116-216ENST00000552800 CUX1P39880 1505 aa16.04■□□□□ 0.16
TMEM116-216ENST00000552800 SLC4A2P04920 1241 aa16.01■□□□□ 0.15
TMEM116-216ENST00000552800 FANCD2Q9BXW9 1451 aa16■□□□□ 0.15
TMEM116-216ENST00000552800 LOC105371045A0A1W2PR82 267 aa16■□□□□ 0.15
TMEM116-216ENST00000552800 SOGA1O94964 1423 aa16■□□□□ 0.15
TMEM116-216ENST00000552800 CSRNP3Q8WYN3 585 aa15.99■□□□□ 0.15
TMEM116-216ENST00000552800 ZBTB22O15209 634 aa15.98■□□□□ 0.15
TMEM116-216ENST00000552800 CAPN15O75808 1086 aa15.98■□□□□ 0.15
TMEM116-216ENST00000552800 SPINK5Q9NQ38 1064 aaPredicted RBP15.98■□□□□ 0.15
TMEM116-216ENST00000552800 PDS5BQ9NTI5 1447 aa15.98■□□□□ 0.15
TMEM116-216ENST00000552800 U3KPZ7 1027 aaPredicted RBP15.98■□□□□ 0.15
TMEM116-216ENST00000552800 NESP48681 1621 aa15.94■□□□□ 0.14
TMEM116-216ENST00000552800 FOXD4L1Q9NU39 408 aa15.92■□□□□ 0.14
TMEM116-216ENST00000552800 RUSC2Q8N2Y8 1516 aa15.92■□□□□ 0.14
TMEM116-216ENST00000552800 DNMBPQ6XZF7 1577 aa15.91■□□□□ 0.14
TMEM116-216ENST00000552800 CEP164Q9UPV0 1460 aa15.88■□□□□ 0.13
TMEM116-216ENST00000552800 KIF21BO75037 1637 aa15.87■□□□□ 0.13
TMEM116-216ENST00000552800 TOPBP1Q92547 1522 aa15.86■□□□□ 0.13
TMEM116-216ENST00000552800 TNIKQ9UKE5 1360 aa15.86■□□□□ 0.13
TMEM116-216ENST00000552800 FAM9AQ8IZU1 332 aaPredicted RBP15.85■□□□□ 0.13
TMEM116-216ENST00000552800 KIF27Q86VH2 1401 aa15.85■□□□□ 0.13
TMEM116-216ENST00000552800 PRXQ9BXM0 1461 aa15.84■□□□□ 0.13
TMEM116-216ENST00000552800 FGD5Q6ZNL6 1462 aa15.82■□□□□ 0.12
TMEM116-216ENST00000552800 URB2Q14146 1524 aaKnown RBP15.81■□□□□ 0.12
TMEM116-216ENST00000552800 ABCA10Q8WWZ4 1543 aa15.8■□□□□ 0.12
TMEM116-216ENST00000552800 GOLGA3Q08378 1498 aa15.8■□□□□ 0.12
TMEM116-216ENST00000552800 ERICH3Q5RHP9 1530 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms