RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 WRNQ14191 1432 aaPredicted RBP eCLIP26.65■■□□□ 1.86
VPS29-209ENST00000551655 MAPKBP1O60336 1514 aa26.65■■□□□ 1.86
VPS29-209ENST00000551655 TSPOAP1O95153 1857 aa26.64■■□□□ 1.86
VPS29-209ENST00000551655 JPH4Q96JJ6 628 aa26.62■■□□□ 1.85
VPS29-209ENST00000551655 ADCY10Q96PN6 1610 aa26.61■■□□□ 1.85
VPS29-209ENST00000551655 ERICH3Q5RHP9 1530 aa26.58■■□□□ 1.85
VPS29-209ENST00000551655 NPM1P06748 294 aaKnown RBP eCLIP26.57■■□□□ 1.84
VPS29-209ENST00000551655 RUSC2Q8N2Y8 1516 aa26.56■■□□□ 1.84
VPS29-209ENST00000551655 BIVM-ERCC5R4GMW8 1640 aa26.54■■□□□ 1.84
VPS29-209ENST00000551655 TOP2BQ02880 1626 aa26.52■■□□□ 1.84
VPS29-209ENST00000551655 ADGRL1O94910 1474 aa26.41■■□□□ 1.82
VPS29-209ENST00000551655 HECW2Q9P2P5 1572 aa26.35■■□□□ 1.81
VPS29-209ENST00000551655 PPRC1Q5VV67 1664 aaKnown RBP26.34■■□□□ 1.81
VPS29-209ENST00000551655 TTBK1Q5TCY1 1321 aaPredicted RBP26.27■■□□□ 1.8
VPS29-209ENST00000551655 KIAA0586Q9BVV6 1533 aa26.24■■□□□ 1.79
VPS29-209ENST00000551655 COL17A1Q9UMD9 1497 aaPredicted RBP26.22■■□□□ 1.79
VPS29-209ENST00000551655 SUPT5HO00267 1087 aaKnown RBP26.19■■□□□ 1.78
VPS29-209ENST00000551655 ASXL2Q76L83 1435 aa26.19■■□□□ 1.78
VPS29-209ENST00000551655 PTPRGP23470 1445 aa26.18■■□□□ 1.78
VPS29-209ENST00000551655 GLI2P10070 1586 aa26.17■■□□□ 1.78
VPS29-209ENST00000551655 ABCC2Q92887 1545 aa26.17■■□□□ 1.78
VPS29-209ENST00000551655 CUL7Q14999 1698 aa26.16■■□□□ 1.78
VPS29-209ENST00000551655 PLB1Q6P1J6 1458 aa26.11■■□□□ 1.77
VPS29-209ENST00000551655 IGF1RP08069 1367 aa26.07■■□□□ 1.76
VPS29-209ENST00000551655 MAP3K4Q9Y6R4 1608 aa26.06■■□□□ 1.76
VPS29-209ENST00000551655 TNIKQ9UKE5 1360 aa26.05■■□□□ 1.76
VPS29-209ENST00000551655 EPRSP07814 1512 aaKnown RBP26.03■■□□□ 1.76
VPS29-209ENST00000551655 UHRF1BP1LA0JNW5 1464 aa25.98■■□□□ 1.75
VPS29-209ENST00000551655 CARMIL2Q6F5E8 1435 aa25.97■■□□□ 1.75
VPS29-209ENST00000551655 TEX14Q8IWB6 1497 aa25.96■■□□□ 1.75
VPS29-209ENST00000551655 UACAQ9BZF9 1416 aa25.96■■□□□ 1.75
VPS29-209ENST00000551655 FBXO41Q8TF61 875 aa25.94■■□□□ 1.74
VPS29-209ENST00000551655 ZCCHC11Q5TAX3 1644 aaKnown RBP25.93■■□□□ 1.74
VPS29-209ENST00000551655 KIF27Q86VH2 1401 aa25.93■■□□□ 1.74
VPS29-209ENST00000551655 IQGAP2Q13576 1575 aa25.91■■□□□ 1.74
VPS29-209ENST00000551655 KDM5BQ9UGL1 1544 aa25.91■■□□□ 1.74
VPS29-209ENST00000551655 DISP1Q96F81 1524 aa25.89■■□□□ 1.74
VPS29-209ENST00000551655 CARMIL1Q5VZK9 1371 aa25.86■■□□□ 1.73
VPS29-209ENST00000551655 KIF21BO75037 1637 aa25.84■■□□□ 1.73
VPS29-209ENST00000551655 WDR7Q9Y4E6 1490 aa25.78■■□□□ 1.72
VPS29-209ENST00000551655 CHIC1Q5VXU3 224 aa25.74■■□□□ 1.71
VPS29-209ENST00000551655 KIAA0556O60303 1618 aa25.72■■□□□ 1.71
VPS29-209ENST00000551655 CD109Q6YHK3 1445 aa25.71■■□□□ 1.71
VPS29-209ENST00000551655 CFAP43Q8NDM7 1665 aa25.7■■□□□ 1.7
VPS29-209ENST00000551655 MAGI3Q5TCQ9 1506 aa25.69■■□□□ 1.7
VPS29-209ENST00000551655 UGGT2Q9NYU1 1516 aa25.69■■□□□ 1.7
VPS29-209ENST00000551655 KCNH8Q96L42 1107 aa25.67■■□□□ 1.7
VPS29-209ENST00000551655 PTPRMP28827 1452 aa25.64■■□□□ 1.69
VPS29-209ENST00000551655 ADAMTSL3P82987 1691 aa25.61■■□□□ 1.69
VPS29-209ENST00000551655 LMTK3Q96Q04 1460 aa25.56■■□□□ 1.68
VPS29-209ENST00000551655 ABCA8O94911 1581 aa25.53■■□□□ 1.68
VPS29-209ENST00000551655 PCF11O94913 1555 aaKnown RBP25.53■■□□□ 1.68
VPS29-209ENST00000551655 RAPGEF2Q9Y4G8 1499 aa25.53■■□□□ 1.68
VPS29-209ENST00000551655 ARAP3Q8WWN8 1544 aa25.52■■□□□ 1.68
VPS29-209ENST00000551655 MADDQ8WXG6 1647 aa25.5■■□□□ 1.67
VPS29-209ENST00000551655 BCORL1Q5H9F3 1711 aa25.48■■□□□ 1.67
VPS29-209ENST00000551655 ARID3CA6NKF2 412 aa25.45■■□□□ 1.66
VPS29-209ENST00000551655 CTTNBP2Q8WZ74 1663 aa25.44■■□□□ 1.66
VPS29-209ENST00000551655 RAPGEF3O95398 923 aa25.43■■□□□ 1.66
VPS29-209ENST00000551655 HSPA2P54652 639 aa25.4■■□□□ 1.66
VPS29-209ENST00000551655 RIMS1Q86UR5 1692 aaKnown RBP25.39■■□□□ 1.66
VPS29-209ENST00000551655 FRMPD1Q5SYB0 1578 aa25.39■■□□□ 1.65
VPS29-209ENST00000551655 ILDR2Q71H61 639 aa25.38■■□□□ 1.65
VPS29-209ENST00000551655 ARID4BQ4LE39 1312 aaPredicted RBP25.37■■□□□ 1.65
VPS29-209ENST00000551655 GOLGA3Q08378 1498 aa25.35■■□□□ 1.65
VPS29-209ENST00000551655 ABCA9Q8IUA7 1624 aa25.35■■□□□ 1.65
VPS29-209ENST00000551655 PLPPR3Q6T4P5 718 aa25.34■■□□□ 1.65
VPS29-209ENST00000551655 CERKQ8TCT0 537 aa25.31■■□□□ 1.64
VPS29-209ENST00000551655 ATP10BO94823 1461 aa25.3■■□□□ 1.64
VPS29-209ENST00000551655 DISP3Q9P2K9 1392 aa25.29■■□□□ 1.64
VPS29-209ENST00000551655 PHLDB1Q86UU1 1377 aa25.26■■□□□ 1.63
VPS29-209ENST00000551655 SOCS7O14512 581 aa25.25■■□□□ 1.63
VPS29-209ENST00000551655 NEO1Q92859 1461 aa25.25■■□□□ 1.63
VPS29-209ENST00000551655 ARHGEF40Q8TER5 1519 aa25.25■■□□□ 1.63
VPS29-209ENST00000551655 P3H3Q8IVL6 736 aa25.22■■□□□ 1.63
VPS29-209ENST00000551655 SIGLEC1Q9BZZ2 1709 aa25.22■■□□□ 1.63
VPS29-209ENST00000551655 RICTORQ6R327 1708 aa25.17■■□□□ 1.62
VPS29-209ENST00000551655 DENND4BO75064 1496 aaPredicted RBP25.1■■□□□ 1.61
VPS29-209ENST00000551655 RAPGEF6Q8TEU7 1601 aa25.09■■□□□ 1.61
VPS29-209ENST00000551655 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.09■■□□□ 1.61
VPS29-209ENST00000551655 HNRNPUL2Q1KMD3 747 aaKnown RBP25.09■■□□□ 1.61
VPS29-209ENST00000551655 FER1L4A9Z1Z3 1794 aa25.08■■□□□ 1.61
VPS29-209ENST00000551655 MLECQ14165 292 aa25.08■■□□□ 1.61
VPS29-209ENST00000551655 SPATA31D1Q6ZQQ2 1576 aa25.08■■□□□ 1.61
VPS29-209ENST00000551655 FANCAO15360 1455 aa25.08■■□□□ 1.6
VPS29-209ENST00000551655 YEATS2Q9ULM3 1422 aa25.07■■□□□ 1.6
VPS29-209ENST00000551655 PRXQ9BXM0 1461 aa25.06■■□□□ 1.6
VPS29-209ENST00000551655 POGZQ7Z3K3 1410 aa25.04■■□□□ 1.6
VPS29-209ENST00000551655 AKNAQ7Z591 1439 aa25.04■■□□□ 1.6
VPS29-209ENST00000551655 ZFYVE16Q7Z3T8 1539 aa25.04■■□□□ 1.6
VPS29-209ENST00000551655 TTC37Q6PGP7 1564 aa25.04■■□□□ 1.6
VPS29-209ENST00000551655 FHOD3Q2V2M9 1422 aa25.03■■□□□ 1.6
VPS29-209ENST00000551655 ZMYM4Q5VZL5 1548 aa25.02■■□□□ 1.6
VPS29-209ENST00000551655 NUP153P49790 1475 aaKnown RBP25.01■■□□□ 1.59
VPS29-209ENST00000551655 SAMD9Q5K651 1589 aa25.01■■□□□ 1.59
VPS29-209ENST00000551655 FAM9AQ8IZU1 332 aaPredicted RBP25■■□□□ 1.59
VPS29-209ENST00000551655 STRCQ7RTU9 1775 aa25■■□□□ 1.59
VPS29-209ENST00000551655 PREX1Q8TCU6 1659 aa24.99■■□□□ 1.59
VPS29-209ENST00000551655 EFCAB5A4FU69 1503 aa24.98■■□□□ 1.59
VPS29-209ENST00000551655 CFAP74Q9C0B2 1584 aa24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms