RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 NISCHQ9Y2I1 1504 aa37.49■■■■□ 3.59
VPS29-209ENST00000551655 ABCC9O60706 1549 aa34.91■■■■□ 3.18
VPS29-209ENST00000551655 CCDC180Q9P1Z9 1646 aa33.97■■■■□ 3.03
VPS29-209ENST00000551655 DNAJC5BQ9UF47 199 aa33.52■■■□□ 2.96
VPS29-209ENST00000551655 RB1CC1Q8TDY2 1594 aa32.74■■■□□ 2.83
VPS29-209ENST00000551655 PABPN1Q86U42 306 aaKnown RBP eCLIP32.37■■■□□ 2.77
VPS29-209ENST00000551655 NACADO15069 1562 aa32.28■■■□□ 2.76
VPS29-209ENST00000551655 UNC13AQ9UPW8 1703 aa32.14■■■□□ 2.74
VPS29-209ENST00000551655 DCAF8L2P0C7V8 631 aa32.06■■■□□ 2.72
VPS29-209ENST00000551655 BICRAQ9NZM4 1560 aa31.92■■■□□ 2.7
VPS29-209ENST00000551655 MYO15BQ96JP2 1530 aa31.49■■■□□ 2.63
VPS29-209ENST00000551655 CECR2Q9BXF3 1484 aa31.46■■■□□ 2.63
VPS29-209ENST00000551655 CC2D2AQ9P2K1 1620 aa31.46■■■□□ 2.63
VPS29-209ENST00000551655 DNAJC5Q9H3Z4 198 aa31.25■■■□□ 2.59
VPS29-209ENST00000551655 SHROOM4Q9ULL8 1493 aa31.19■■■□□ 2.58
VPS29-209ENST00000551655 EIF4G1Q04637 1599 aaKnown RBP31.17■■■□□ 2.58
VPS29-209ENST00000551655 SCRIBQ14160 1630 aa31.04■■■□□ 2.56
VPS29-209ENST00000551655 ZCCHC6Q5VYS8 1495 aaKnown RBP30.89■■■□□ 2.54
VPS29-209ENST00000551655 DCAF1Q9Y4B6 1507 aa30.82■■■□□ 2.52
VPS29-209ENST00000551655 CUX2O14529 1486 aa30.29■■■□□ 2.44
VPS29-209ENST00000551655 ERCC6Q03468 1493 aa30.12■■■□□ 2.41
VPS29-209ENST00000551655 NCAPD3P42695 1498 aa29.81■■■□□ 2.36
VPS29-209ENST00000551655 NESP48681 1621 aa29.78■■■□□ 2.36
VPS29-209ENST00000551655 ATAD2BQ9ULI0 1458 aa29.67■■■□□ 2.34
VPS29-209ENST00000551655 TRIM41Q8WV44 630 aa29.65■■■□□ 2.34
VPS29-209ENST00000551655 THOC2Q8NI27 1593 aaKnown RBP29.6■■■□□ 2.33
VPS29-209ENST00000551655 HMGXB3Q12766 1538 aa29.53■■■□□ 2.32
VPS29-209ENST00000551655 SMARCA2P51531 1590 aa29.48■■■□□ 2.31
VPS29-209ENST00000551655 SMARCA4P51532 1647 aa29.45■■■□□ 2.31
VPS29-209ENST00000551655 KIF21AQ7Z4S6 1674 aa29.36■■■□□ 2.29
VPS29-209ENST00000551655 BAZ1BQ9UIG0 1483 aaKnown RBP29.33■■■□□ 2.29
VPS29-209ENST00000551655 LAMC3Q9Y6N6 1575 aa29.3■■■□□ 2.28
VPS29-209ENST00000551655 BAZ1AQ9NRL2 1556 aaPredicted RBP29.12■■■□□ 2.25
VPS29-209ENST00000551655 PDS5BQ9NTI5 1447 aa29.11■■■□□ 2.25
VPS29-209ENST00000551655 PEG3Q9GZU2 1588 aa29.1■■■□□ 2.25
VPS29-209ENST00000551655 MRC2Q9UBG0 1479 aa28.98■■■□□ 2.23
VPS29-209ENST00000551655 MROH2BQ7Z745 1585 aa28.95■■■□□ 2.22
VPS29-209ENST00000551655 WDR62O43379 1518 aa28.94■■■□□ 2.22
VPS29-209ENST00000551655 CADPSQ9ULU8 1353 aa28.88■■■□□ 2.21
VPS29-209ENST00000551655 OSCARQ8IYS5 282 aa28.76■■■□□ 2.19
VPS29-209ENST00000551655 CEP164Q9UPV0 1460 aa28.7■■■□□ 2.18
VPS29-209ENST00000551655 RIMBP3CA6NJZ7 1639 aa28.61■■■□□ 2.17
VPS29-209ENST00000551655 RIMBP3BA6NNM3 1639 aa28.61■■■□□ 2.17
VPS29-209ENST00000551655 RIMBP3Q9UFD9 1639 aa28.61■■■□□ 2.17
VPS29-209ENST00000551655 FANCD2Q9BXW9 1451 aa28.61■■■□□ 2.17
VPS29-209ENST00000551655 WIZO95785 1651 aa28.58■■■□□ 2.17
VPS29-209ENST00000551655 URB2Q14146 1524 aaKnown RBP28.48■■■□□ 2.15
VPS29-209ENST00000551655 ARHGEF11O15085 1522 aa28.4■■■□□ 2.14
VPS29-209ENST00000551655 CFTRP13569 1480 aa28.39■■■□□ 2.13
VPS29-209ENST00000551655 ZNF608Q9ULD9 1512 aaPredicted RBP28.29■■■□□ 2.12
VPS29-209ENST00000551655 CYB5RLQ6IPT4 315 aa28.23■■■□□ 2.11
VPS29-209ENST00000551655 TRHP20396 242 aaPredicted RBP28.18■■■□□ 2.1
VPS29-209ENST00000551655 IFT140Q96RY7 1462 aa28.13■■■□□ 2.09
VPS29-209ENST00000551655 ARAP1Q96P48 1450 aa28.08■■■□□ 2.09
VPS29-209ENST00000551655 TOP2AP11388 1531 aaKnown RBP28.08■■■□□ 2.09
VPS29-209ENST00000551655 PRDM2Q13029 1718 aa28.08■■■□□ 2.09
VPS29-209ENST00000551655 EIF4G3O43432 1585 aaKnown RBP28.07■■■□□ 2.08
VPS29-209ENST00000551655 CHD1O14646 1710 aa28.05■■■□□ 2.08
VPS29-209ENST00000551655 RSF1Q96T23 1441 aaPredicted RBP27.99■■■□□ 2.07
VPS29-209ENST00000551655 TOPBP1Q92547 1522 aa27.98■■■□□ 2.07
VPS29-209ENST00000551655 AEBP2Q6ZN18 517 aaPredicted RBP27.93■■■□□ 2.06
VPS29-209ENST00000551655 AQRO60306 1485 aaKnown RBP eCLIP27.89■■■□□ 2.062e-9■■■■■ 38.2
VPS29-209ENST00000551655 FBLN2P98095 1184 aa27.86■■■□□ 2.05
VPS29-209ENST00000551655 TARBP1Q13395 1621 aaKnown RBP27.82■■■□□ 2.04
VPS29-209ENST00000551655 CCDC88BA6NC98 1476 aa27.8■■■□□ 2.04
VPS29-209ENST00000551655 DNMBPQ6XZF7 1577 aa27.79■■■□□ 2.04
VPS29-209ENST00000551655 ABCC8Q09428 1581 aa27.73■■■□□ 2.03
VPS29-209ENST00000551655 POLA1P09884 1462 aaPredicted RBP27.65■■■□□ 2.02
VPS29-209ENST00000551655 CLASP1Q7Z460 1538 aa27.65■■■□□ 2.02
VPS29-209ENST00000551655 RAD54L2Q9Y4B4 1467 aa27.62■■■□□ 2.01
VPS29-209ENST00000551655 TDRD9Q8NDG6 1382 aaKnown RBP27.59■■■□□ 2.01
VPS29-209ENST00000551655 SNAPC4Q5SXM2 1469 aa27.58■■■□□ 2.01
VPS29-209ENST00000551655 SYNJ1O43426 1573 aa27.5■■□□□ 1.99
VPS29-209ENST00000551655 SOGA1O94964 1423 aa27.47■■□□□ 1.99
VPS29-209ENST00000551655 CHMP7Q8WUX9 453 aaPredicted RBP27.45■■□□□ 1.98
VPS29-209ENST00000551655 GAPVD1Q14C86 1478 aa27.39■■□□□ 1.98
VPS29-209ENST00000551655 MAGI1Q96QZ7 1491 aaPredicted RBP27.38■■□□□ 1.97
VPS29-209ENST00000551655 FGD5Q6ZNL6 1462 aa27.38■■□□□ 1.97
VPS29-209ENST00000551655 WDR97A6NE52 1622 aa27.34■■□□□ 1.97
VPS29-209ENST00000551655 SYNJ2O15056 1496 aa27.32■■□□□ 1.96
VPS29-209ENST00000551655 GRIN2BQ13224 1484 aa27.32■■□□□ 1.96
VPS29-209ENST00000551655 ERCC6L2Q5T890 1561 aa27.26■■□□□ 1.95
VPS29-209ENST00000551655 PBRM1Q86U86 1689 aa27.24■■□□□ 1.95
VPS29-209ENST00000551655 CUX1P39880 1505 aa27.24■■□□□ 1.95
VPS29-209ENST00000551655 KIF13AQ9H1H9 1805 aa27.09■■□□□ 1.93
VPS29-209ENST00000551655 CEP170Q5SW79 1584 aa27.05■■□□□ 1.92
VPS29-209ENST00000551655 ABCA5Q8WWZ7 1642 aa27.05■■□□□ 1.92
VPS29-209ENST00000551655 GRIN2AQ12879 1464 aa27■■□□□ 1.91
VPS29-209ENST00000551655 ABCA10Q8WWZ4 1543 aa26.95■■□□□ 1.91
VPS29-209ENST00000551655 SHROOM2Q13796 1616 aa26.92■■□□□ 1.9
VPS29-209ENST00000551655 ADAMTS12P58397 1594 aa26.92■■□□□ 1.9
VPS29-209ENST00000551655 NUP160Q12769 1436 aa26.91■■□□□ 1.9
VPS29-209ENST00000551655 ILDR1Q86SU0 546 aaPredicted RBP26.89■■□□□ 1.9
VPS29-209ENST00000551655 KDM4FA0A1W2PPD8 638 aa26.82■■□□□ 1.88
VPS29-209ENST00000551655 FAM69CQ0P6D2 419 aa26.78■■□□□ 1.88
VPS29-209ENST00000551655 ABCC10Q5T3U5 1492 aa26.75■■□□□ 1.87
VPS29-209ENST00000551655 PRG4Q92954 1404 aaPredicted RBP26.75■■□□□ 1.87
VPS29-209ENST00000551655 FHAD1B1AJZ9 1412 aa26.73■■□□□ 1.87
VPS29-209ENST00000551655 DIP2BQ9P265 1576 aa26.71■■□□□ 1.87
VPS29-209ENST00000551655 KDM6BO15054 1643 aa26.7■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms