RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 UBTFP17480 764 aaKnown RBP25.92■■□□□ 1.74
PRPF40A-212ENST00000545856 FBLN2P98095 1184 aa25.91■■□□□ 1.74
PRPF40A-212ENST00000545856 CLASP1Q7Z460 1538 aa25.86■■□□□ 1.73
PRPF40A-212ENST00000545856 EFCAB5A4FU69 1503 aa25.83■■□□□ 1.73
PRPF40A-212ENST00000545856 LOC105371045A0A1W2PR82 267 aa25.82■■□□□ 1.72
PRPF40A-212ENST00000545856 UGGT2Q9NYU1 1516 aa25.82■■□□□ 1.72
PRPF40A-212ENST00000545856 SHROOM2Q13796 1616 aa25.81■■□□□ 1.72
PRPF40A-212ENST00000545856 OSCARQ8IYS5 282 aa25.78■■□□□ 1.72
PRPF40A-212ENST00000545856 SAMD9Q5K651 1589 aa25.76■■□□□ 1.71
PRPF40A-212ENST00000545856 CEP162Q5TB80 1403 aa25.75■■□□□ 1.71
PRPF40A-212ENST00000545856 CLIP1P30622 1438 aa25.71■■□□□ 1.71
PRPF40A-212ENST00000545856 EHMT2Q96KQ7 1210 aa25.69■■□□□ 1.7
PRPF40A-212ENST00000545856 CARMIL2Q6F5E8 1435 aa25.67■■□□□ 1.7
PRPF40A-212ENST00000545856 KIAA0556O60303 1618 aa25.66■■□□□ 1.7
PRPF40A-212ENST00000545856 JPH4Q96JJ6 628 aa25.65■■□□□ 1.7
PRPF40A-212ENST00000545856 ARHGAP35Q9NRY4 1499 aa25.63■■□□□ 1.69
PRPF40A-212ENST00000545856 DISP1Q96F81 1524 aa25.62■■□□□ 1.69
PRPF40A-212ENST00000545856 PRG4Q92954 1404 aaPredicted RBP25.57■■□□□ 1.68
PRPF40A-212ENST00000545856 FMN1Q68DA7 1419 aa25.52■■□□□ 1.68
PRPF40A-212ENST00000545856 ARAP1Q96P48 1450 aa25.51■■□□□ 1.67
PRPF40A-212ENST00000545856 VPS8Q8N3P4 1428 aa25.46■■□□□ 1.67
PRPF40A-212ENST00000545856 FHOD3Q2V2M9 1422 aa25.45■■□□□ 1.67
PRPF40A-212ENST00000545856 RANGAP1P46060 587 aaPredicted RBP25.41■■□□□ 1.66
PRPF40A-212ENST00000545856 ARHGEF11O15085 1522 aa25.41■■□□□ 1.66
PRPF40A-212ENST00000545856 ERCC6L2Q5T890 1561 aa25.4■■□□□ 1.66
PRPF40A-212ENST00000545856 FYCO1Q9BQS8 1478 aa25.38■■□□□ 1.65
PRPF40A-212ENST00000545856 PTPRGP23470 1445 aa25.37■■□□□ 1.65
PRPF40A-212ENST00000545856 CASKIN1Q8WXD9 1431 aa25.35■■□□□ 1.65
PRPF40A-212ENST00000545856 HECW1Q76N89 1606 aa25.34■■□□□ 1.65
PRPF40A-212ENST00000545856 RAPGEF6Q8TEU7 1601 aa25.34■■□□□ 1.65
PRPF40A-212ENST00000545856 RIMBP3CA6NJZ7 1639 aa25.33■■□□□ 1.65
PRPF40A-212ENST00000545856 RIMBP3BA6NNM3 1639 aa25.33■■□□□ 1.65
PRPF40A-212ENST00000545856 RIMBP3Q9UFD9 1639 aa25.33■■□□□ 1.65
PRPF40A-212ENST00000545856 ABCA8O94911 1581 aa25.33■■□□□ 1.64
PRPF40A-212ENST00000545856 PCF11O94913 1555 aaKnown RBP25.32■■□□□ 1.64
PRPF40A-212ENST00000545856 P3H3Q8IVL6 736 aa25.31■■□□□ 1.64
PRPF40A-212ENST00000545856 UHRF1BP1LA0JNW5 1464 aa25.29■■□□□ 1.64
PRPF40A-212ENST00000545856 MAP3K1Q13233 1512 aa25.27■■□□□ 1.64
PRPF40A-212ENST00000545856 ABCC2Q92887 1545 aa25.27■■□□□ 1.64
PRPF40A-212ENST00000545856 CCDC18Q5T9S5 1454 aa25.26■■□□□ 1.63
PRPF40A-212ENST00000545856 UACAQ9BZF9 1416 aa25.26■■□□□ 1.63
PRPF40A-212ENST00000545856 CFAP43Q8NDM7 1665 aa25.21■■□□□ 1.63
PRPF40A-212ENST00000545856 PLB1Q6P1J6 1458 aa25.21■■□□□ 1.63
PRPF40A-212ENST00000545856 NUP153P49790 1475 aaKnown RBP25.18■■□□□ 1.62
PRPF40A-212ENST00000545856 LRRIQ1Q96JM4 1722 aa25.15■■□□□ 1.62
PRPF40A-212ENST00000545856 EPRSP07814 1512 aaKnown RBP25.15■■□□□ 1.62
PRPF40A-212ENST00000545856 TIAM1Q13009 1591 aa25.15■■□□□ 1.62
PRPF40A-212ENST00000545856 ADCY10Q96PN6 1610 aa25.14■■□□□ 1.61
PRPF40A-212ENST00000545856 KDM5BQ9UGL1 1544 aa25.13■■□□□ 1.61
PRPF40A-212ENST00000545856 APLP2Q06481 763 aa25.12■■□□□ 1.61
PRPF40A-212ENST00000545856 DNAJC5Q9H3Z4 198 aa25.08■■□□□ 1.61
PRPF40A-212ENST00000545856 ZCCHC11Q5TAX3 1644 aaKnown RBP25.06■■□□□ 1.6
PRPF40A-212ENST00000545856 TTBK1Q5TCY1 1321 aaPredicted RBP25.06■■□□□ 1.6
PRPF40A-212ENST00000545856 ATP10BO94823 1461 aa25.04■■□□□ 1.6
PRPF40A-212ENST00000545856 CDK11AQ9UQ88 783 aaPredicted RBP25.04■■□□□ 1.6
PRPF40A-212ENST00000545856 EHBP1L1Q8N3D4 1523 aa25.03■■□□□ 1.6
PRPF40A-212ENST00000545856 CDK13Q14004 1512 aaKnown RBP25.01■■□□□ 1.59
PRPF40A-212ENST00000545856 LRRC9Q6ZRR7 1453 aa24.98■■□□□ 1.59
PRPF40A-212ENST00000545856 ATP1B4Q9UN42 357 aaPredicted RBP24.98■■□□□ 1.59
PRPF40A-212ENST00000545856 MAPKBP1O60336 1514 aa24.96■■□□□ 1.59
PRPF40A-212ENST00000545856 CYB5RLQ6IPT4 315 aa24.95■■□□□ 1.59
PRPF40A-212ENST00000545856 NPM1P06748 294 aaKnown RBP eCLIP24.94■■□□□ 1.58
PRPF40A-212ENST00000545856 TROQ12816 1431 aaPredicted RBP24.93■■□□□ 1.58
PRPF40A-212ENST00000545856 SUPT6HQ7KZ85 1726 aaKnown RBP24.93■■□□□ 1.58
PRPF40A-212ENST00000545856 MTUS2Q5JR59 1369 aa24.93■■□□□ 1.58
PRPF40A-212ENST00000545856 PLEKHD1A6NEE1 506 aa24.89■■□□□ 1.57
PRPF40A-212ENST00000545856 KIF14Q15058 1648 aa24.88■■□□□ 1.57
PRPF40A-212ENST00000545856 WDR7Q9Y4E6 1490 aa24.88■■□□□ 1.57
PRPF40A-212ENST00000545856 MAGI3Q5TCQ9 1506 aa24.88■■□□□ 1.57
PRPF40A-212ENST00000545856 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.87■■□□□ 1.57
PRPF40A-212ENST00000545856 HNRNPUL2Q1KMD3 747 aaKnown RBP24.87■■□□□ 1.57
PRPF40A-212ENST00000545856 ASXL2Q76L83 1435 aa24.82■■□□□ 1.56
PRPF40A-212ENST00000545856 ITSN2Q9NZM3 1697 aa24.79■■□□□ 1.56
PRPF40A-212ENST00000545856 KANK4Q5T7N3 995 aaPredicted RBP24.79■■□□□ 1.56
PRPF40A-212ENST00000545856 NCOA2Q15596 1464 aa24.78■■□□□ 1.56
PRPF40A-212ENST00000545856 ARID3CA6NKF2 412 aa24.77■■□□□ 1.56
PRPF40A-212ENST00000545856 ABCA9Q8IUA7 1624 aa24.75■■□□□ 1.55
PRPF40A-212ENST00000545856 GLI2P10070 1586 aa24.74■■□□□ 1.55
PRPF40A-212ENST00000545856 ABCC10Q5T3U5 1492 aa24.73■■□□□ 1.55
PRPF40A-212ENST00000545856 ARAP3Q8WWN8 1544 aa24.72■■□□□ 1.55
PRPF40A-212ENST00000545856 MYO5CQ9NQX4 1742 aa24.71■■□□□ 1.55
PRPF40A-212ENST00000545856 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.7■■□□□ 1.548e-8■■□□□ 12
PRPF40A-212ENST00000545856 CDC42BPAQ5VT25 1732 aa24.69■■□□□ 1.54
PRPF40A-212ENST00000545856 PREX2Q70Z35 1606 aa24.68■■□□□ 1.54
PRPF40A-212ENST00000545856 MYOM3Q5VTT5 1437 aa24.67■■□□□ 1.54
PRPF40A-212ENST00000545856 MIA2Q96PC5 1412 aa24.67■■□□□ 1.54
PRPF40A-212ENST00000545856 DIP2BQ9P265 1576 aa24.67■■□□□ 1.54
PRPF40A-212ENST00000545856 TTC37Q6PGP7 1564 aa24.67■■□□□ 1.54
PRPF40A-212ENST00000545856 CCNB3Q8WWL7 1395 aa24.65■■□□□ 1.54
PRPF40A-212ENST00000545856 GPATCH8Q9UKJ3 1502 aaKnown RBP24.62■■□□□ 1.53
PRPF40A-212ENST00000545856 MAP3K4Q9Y6R4 1608 aa24.62■■□□□ 1.53
PRPF40A-212ENST00000545856 PHLDB1Q86UU1 1377 aa24.61■■□□□ 1.53
PRPF40A-212ENST00000545856 RRBP1Q9P2E9 1410 aaKnown RBP24.61■■□□□ 1.53
PRPF40A-212ENST00000545856 CFAP74Q9C0B2 1584 aa24.61■■□□□ 1.53
PRPF40A-212ENST00000545856 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.6■■□□□ 1.53
PRPF40A-212ENST00000545856 CDC42BPBQ9Y5S2 1711 aa24.6■■□□□ 1.53
PRPF40A-212ENST00000545856 KIF13AQ9H1H9 1805 aa24.6■■□□□ 1.53
PRPF40A-212ENST00000545856 FGD6Q6ZV73 1430 aa24.59■■□□□ 1.53
PRPF40A-212ENST00000545856 PLCH2O75038 1416 aa24.57■■□□□ 1.52
PRPF40A-212ENST00000545856 KCNH8Q96L42 1107 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms