RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SF3B1O75533 1304 aaKnown RBP eCLIP17.15■□□□□ 0.344e-7■■■■■ 86.2
PRPF40A-212ENST00000545856 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.04■□□□□ 0.328e-7■■■■■ 72.3
PRPF40A-212ENST00000545856 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.32□□□□□ -0.282e-8■■■■■ 64.5
PRPF40A-212ENST00000545856 QKIQ96PU8 341 aaKnown RBP eCLIP16.42■□□□□ 0.222e-31■■■■■ 60
PRPF40A-212ENST00000545856 SF3B4Q15427 424 aaKnown RBP eCLIP14.45□□□□□ -0.12e-14■■■■■ 48
PRPF40A-212ENST00000545856 YBX3P16989 372 aaKnown RBP eCLIP19.32■□□□□ 0.681e-8■■■■■ 42.6
PRPF40A-212ENST00000545856 RBM22Q9NW64 420 aaKnown RBP eCLIP16.29■□□□□ 0.21e-9■■■■■ 40.4
PRPF40A-212ENST00000545856 HNRNPMP52272 730 aaKnown RBP eCLIP24.15■■□□□ 1.462e-7■■■■■ 36.2
PRPF40A-212ENST00000545856 ILF3Q12906 894 aaKnown RBP eCLIP15.73■□□□□ 0.116e-10■■■■■ 32.4
PRPF40A-212ENST00000545856 RBFOX2O43251 390 aaKnown RBP eCLIP13.01□□□□□ -0.332e-9■■■■■ 32.3
PRPF40A-212ENST00000545856 AQRO60306 1485 aaKnown RBP eCLIP26.45■■□□□ 1.822e-7■■■■■ 31.9
PRPF40A-212ENST00000545856 XRCC6P12956 609 aaKnown RBP eCLIP17.96■□□□□ 0.476e-6■■■■■ 31.4
PRPF40A-212ENST00000545856 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.22■□□□□ 0.351e-7■■■■■ 28.2
PRPF40A-212ENST00000545856 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP21.17■□□□□ 0.981e-8■■■■□ 25.3
PRPF40A-212ENST00000545856 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.52■■□□□ 1.363e-8■■■■□ 24.9
PRPF40A-212ENST00000545856 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.29■□□□□ 0.367e-10■■■■□ 22.7
PRPF40A-212ENST00000545856 EFTUD2Q15029 972 aaKnown RBP eCLIP15.84■□□□□ 0.132e-7■■■■□ 22.5
PRPF40A-212ENST00000545856 U2AF2P26368 475 aaKnown RBP eCLIP18.39■□□□□ 0.537e-7■■■■□ 19.7
PRPF40A-212ENST00000545856 FMR1Q06787 632 aaKnown RBP eCLIP18.55■□□□□ 0.563e-7■■■■□ 19.7
PRPF40A-212ENST00000545856 FTOQ9C0B1 505 aaKnown RBP eCLIP18.09■□□□□ 0.492e-6■■■■□ 19.3
PRPF40A-212ENST00000545856 SRSF1Q07955 248 aaKnown RBP eCLIP13.81□□□□□ -0.22e-15■■■□□ 18.7
PRPF40A-212ENST00000545856 HNRNPCP07910 306 aaKnown RBP eCLIP12.49□□□□□ -0.414e-6■■■□□ 18.4
PRPF40A-212ENST00000545856 TBRG4Q969Z0 631 aaKnown RBP eCLIP16■□□□□ 0.151e-6■■■□□ 17.7
PRPF40A-212ENST00000545856 CPSF6Q16630 551 aaKnown RBP eCLIP15.36■□□□□ 0.052e-11■■■□□ 17.5
PRPF40A-212ENST00000545856 FXR1P51114 621 aaKnown RBP eCLIP17.13■□□□□ 0.335e-6■■■□□ 17
PRPF40A-212ENST00000545856 FXR2P51116 673 aaKnown RBP eCLIP18.12■□□□□ 0.495e-9■■■□□ 17
PRPF40A-212ENST00000545856 KHSRPQ92945 711 aaKnown RBP eCLIP16.76■□□□□ 0.272e-7■■■□□ 15.9
PRPF40A-212ENST00000545856 TRA2AQ13595 282 aaKnown RBP eCLIP15.4■□□□□ 0.065e-8■■■□□ 15.5
PRPF40A-212ENST00000545856 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.09■□□□□ 0.176e-8■■■□□ 14.7
PRPF40A-212ENST00000545856 EIF3DO15371 548 aaKnown RBP eCLIP17.71■□□□□ 0.433e-7■■□□□ 14.3
PRPF40A-212ENST00000545856 HLTFQ14527 1009 aaKnown RBP eCLIP16.17■□□□□ 0.182e-7■■□□□ 14.1
PRPF40A-212ENST00000545856 RBM15Q96T37 977 aaKnown RBP eCLIP16.17■□□□□ 0.181e-6■■□□□ 13.4
PRPF40A-212ENST00000545856 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.77■□□□□ 0.286e-9■■□□□ 13.2
PRPF40A-212ENST00000545856 DDX3XO00571 662 aaKnown RBP eCLIP16.96■□□□□ 0.311e-15■■□□□ 12.1
PRPF40A-212ENST00000545856 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.7■■□□□ 1.548e-8■■□□□ 12
PRPF40A-212ENST00000545856 GPKOWQ92917 476 aaPredicted RBP eCLIP18.39■□□□□ 0.534e-6■■□□□ 11.8
PRPF40A-212ENST00000545856 PUM1Q14671 1186 aaKnown RBP eCLIP15.14■□□□□ 0.016e-50■■□□□ 11.7
PRPF40A-212ENST00000545856 PPIGQ13427 754 aaKnown RBP eCLIP17.4■□□□□ 0.389e-10■■□□□ 11.4
PRPF40A-212ENST00000545856 ZNF622Q969S3 477 aaKnown RBP eCLIP19.67■□□□□ 0.742e-9■■□□□ 11.4
PRPF40A-212ENST00000545856 G3BP1Q13283 466 aaKnown RBP eCLIP19.83■□□□□ 0.766e-8■□□□□ 11.3
PRPF40A-212ENST00000545856 RPS3P23396 243 aaKnown RBP eCLIP15.9■□□□□ 0.143e-6■□□□□ 11.1
PRPF40A-212ENST00000545856 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.23■□□□□ 0.353e-14■□□□□ 11.1
PRPF40A-212ENST00000545856 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.43■□□□□ 0.73e-7■□□□□ 10.5
PRPF40A-212ENST00000545856 SF3A3Q12874 501 aaKnown RBP eCLIP15.11■□□□□ 0.012e-7■□□□□ 10.3
PRPF40A-212ENST00000545856 TAF15Q92804 592 aaKnown RBP eCLIP12.42□□□□□ -0.428e-10■□□□□ 10.2
PRPF40A-212ENST00000545856 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.57□□□□□ -0.086e-16■□□□□ 10.2
PRPF40A-212ENST00000545856 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.46□□□□□ -0.259e-6■□□□□ 9.4
PRPF40A-212ENST00000545856 ZRANB2O95218 330 aaKnown RBP eCLIP16.62■□□□□ 0.256e-7■□□□□ 8.7
PRPF40A-212ENST00000545856 NCBP2P52298 156 aaKnown RBP eCLIP15.01□□□□□ -0.012e-16■□□□□ 8.3
Retrieved 49 of 49 RNA–protein pairs in 10.1 ms