RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 PRXQ9BXM0 1461 aa32.18■■■□□ 2.74
DDX55-211ENST00000544429 KIAA0586Q9BVV6 1533 aa32.15■■■□□ 2.74
DDX55-211ENST00000544429 ARAP1Q96P48 1450 aa32.1■■■□□ 2.73
DDX55-211ENST00000544429 CSRNP3Q8WYN3 585 aa32.07■■■□□ 2.72
DDX55-211ENST00000544429 ERCC6L2Q5T890 1561 aa32.05■■■□□ 2.72
DDX55-211ENST00000544429 JPH4Q96JJ6 628 aa32.02■■■□□ 2.72
DDX55-211ENST00000544429 IQGAP2Q13576 1575 aa31.98■■■□□ 2.71
DDX55-211ENST00000544429 PRG4Q92954 1404 aaPredicted RBP31.96■■■□□ 2.71
DDX55-211ENST00000544429 CTTNBP2Q8WZ74 1663 aa31.93■■■□□ 2.7
DDX55-211ENST00000544429 CYB5RLQ6IPT4 315 aa31.91■■■□□ 2.7
DDX55-211ENST00000544429 KIF21BO75037 1637 aa31.89■■■□□ 2.7
DDX55-211ENST00000544429 FAM9AQ8IZU1 332 aaPredicted RBP31.87■■■□□ 2.69
DDX55-211ENST00000544429 UGGT2Q9NYU1 1516 aa31.85■■■□□ 2.69
DDX55-211ENST00000544429 DISP1Q96F81 1524 aa31.78■■■□□ 2.68
DDX55-211ENST00000544429 CARMIL2Q6F5E8 1435 aa31.72■■■□□ 2.67
DDX55-211ENST00000544429 KIAA0556O60303 1618 aa31.68■■■□□ 2.66
DDX55-211ENST00000544429 TNIKQ9UKE5 1360 aa31.64■■■□□ 2.66
DDX55-211ENST00000544429 GOLGA3Q08378 1498 aa31.64■■■□□ 2.66
DDX55-211ENST00000544429 PTPRGP23470 1445 aa31.58■■■□□ 2.65
DDX55-211ENST00000544429 SAMD9Q5K651 1589 aa31.56■■■□□ 2.64
DDX55-211ENST00000544429 ADCY10Q96PN6 1610 aa31.54■■■□□ 2.64
DDX55-211ENST00000544429 UHRF1BP1LA0JNW5 1464 aa31.45■■■□□ 2.62
DDX55-211ENST00000544429 UBTFP17480 764 aaKnown RBP31.42■■■□□ 2.62
DDX55-211ENST00000544429 UACAQ9BZF9 1416 aa31.41■■■□□ 2.62
DDX55-211ENST00000544429 EFCAB5A4FU69 1503 aa31.4■■■□□ 2.62
DDX55-211ENST00000544429 ABCC2Q92887 1545 aa31.39■■■□□ 2.61
DDX55-211ENST00000544429 EHMT2Q96KQ7 1210 aa31.37■■■□□ 2.61
DDX55-211ENST00000544429 ABCA8O94911 1581 aa31.35■■■□□ 2.61
DDX55-211ENST00000544429 TTBK1Q5TCY1 1321 aaPredicted RBP31.34■■■□□ 2.61
DDX55-211ENST00000544429 MAPKBP1O60336 1514 aa31.33■■■□□ 2.61
DDX55-211ENST00000544429 PLB1Q6P1J6 1458 aa31.33■■■□□ 2.61
DDX55-211ENST00000544429 P3H3Q8IVL6 736 aa31.29■■■□□ 2.6
DDX55-211ENST00000544429 KDM5BQ9UGL1 1544 aa31.29■■■□□ 2.6
DDX55-211ENST00000544429 ARHGAP35Q9NRY4 1499 aa31.27■■■□□ 2.6
DDX55-211ENST00000544429 FHOD3Q2V2M9 1422 aa31.26■■■□□ 2.6
DDX55-211ENST00000544429 RANGAP1P46060 587 aaPredicted RBP31.24■■■□□ 2.59
DDX55-211ENST00000544429 NPM1P06748 294 aaKnown RBP eCLIP31.23■■■□□ 2.59
DDX55-211ENST00000544429 ZCCHC11Q5TAX3 1644 aaKnown RBP31.2■■■□□ 2.59
DDX55-211ENST00000544429 RAPGEF6Q8TEU7 1601 aa31.17■■■□□ 2.58
DDX55-211ENST00000544429 KIF13AQ9H1H9 1805 aa31.17■■■□□ 2.58
DDX55-211ENST00000544429 TRHP20396 242 aaPredicted RBP31.13■■■□□ 2.57
DDX55-211ENST00000544429 ABCC10Q5T3U5 1492 aa31.13■■■□□ 2.57
DDX55-211ENST00000544429 DIP2BQ9P265 1576 aa31.11■■■□□ 2.57
DDX55-211ENST00000544429 ASXL2Q76L83 1435 aa31.1■■■□□ 2.57
DDX55-211ENST00000544429 NUP153P49790 1475 aaKnown RBP31.08■■■□□ 2.57
DDX55-211ENST00000544429 ATP10BO94823 1461 aa31.06■■■□□ 2.56
DDX55-211ENST00000544429 FMN1Q68DA7 1419 aa31.06■■■□□ 2.56
DDX55-211ENST00000544429 CLIP1P30622 1438 aa31.05■■■□□ 2.56
DDX55-211ENST00000544429 LOC105371045A0A1W2PR82 267 aa31.01■■■□□ 2.55
DDX55-211ENST00000544429 WDR7Q9Y4E6 1490 aa30.99■■■□□ 2.55
DDX55-211ENST00000544429 GLI2P10070 1586 aa30.98■■■□□ 2.55
DDX55-211ENST00000544429 CEP162Q5TB80 1403 aa30.96■■■□□ 2.55
DDX55-211ENST00000544429 EPRSP07814 1512 aaKnown RBP30.95■■■□□ 2.55
DDX55-211ENST00000544429 FAM69CQ0P6D2 419 aa30.94■■■□□ 2.54
DDX55-211ENST00000544429 HECW1Q76N89 1606 aa30.92■■■□□ 2.54
DDX55-211ENST00000544429 ARID3CA6NKF2 412 aa30.87■■■□□ 2.53
DDX55-211ENST00000544429 CASKIN1Q8WXD9 1431 aa30.87■■■□□ 2.53
DDX55-211ENST00000544429 PCF11O94913 1555 aaKnown RBP30.87■■■□□ 2.53
DDX55-211ENST00000544429 LRRIQ1Q96JM4 1722 aa30.86■■■□□ 2.53
DDX55-211ENST00000544429 MAP3K4Q9Y6R4 1608 aa30.85■■■□□ 2.53
DDX55-211ENST00000544429 CDK13Q14004 1512 aaKnown RBP30.83■■■□□ 2.53
DDX55-211ENST00000544429 FYCO1Q9BQS8 1478 aa30.81■■■□□ 2.52
DDX55-211ENST00000544429 PPRC1Q5VV67 1664 aaKnown RBP30.81■■■□□ 2.52
DDX55-211ENST00000544429 TSPOAP1O95153 1857 aa30.77■■■□□ 2.52
DDX55-211ENST00000544429 CFAP43Q8NDM7 1665 aa30.76■■■□□ 2.51
DDX55-211ENST00000544429 ABCA9Q8IUA7 1624 aa30.73■■■□□ 2.51
DDX55-211ENST00000544429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.72■■■□□ 2.51
DDX55-211ENST00000544429 HNRNPUL2Q1KMD3 747 aaKnown RBP30.72■■■□□ 2.51
DDX55-211ENST00000544429 CCDC18Q5T9S5 1454 aa30.71■■■□□ 2.51
DDX55-211ENST00000544429 KCNH8Q96L42 1107 aa30.71■■■□□ 2.51
DDX55-211ENST00000544429 PLEKHD1A6NEE1 506 aa30.69■■■□□ 2.5
DDX55-211ENST00000544429 ATP1B4Q9UN42 357 aaPredicted RBP30.67■■■□□ 2.5
DDX55-211ENST00000544429 MAGI3Q5TCQ9 1506 aa30.66■■■□□ 2.5
DDX55-211ENST00000544429 CD109Q6YHK3 1445 aa30.64■■■□□ 2.5
DDX55-211ENST00000544429 TROQ12816 1431 aaPredicted RBP30.6■■■□□ 2.49
DDX55-211ENST00000544429 TEX14Q8IWB6 1497 aa30.6■■■□□ 2.49
DDX55-211ENST00000544429 VPS8Q8N3P4 1428 aa30.6■■■□□ 2.49
DDX55-211ENST00000544429 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.6■■■□□ 2.49
DDX55-211ENST00000544429 CDK11AQ9UQ88 783 aaPredicted RBP30.59■■■□□ 2.49
DDX55-211ENST00000544429 TTC37Q6PGP7 1564 aa30.56■■■□□ 2.48
DDX55-211ENST00000544429 KIF14Q15058 1648 aa30.54■■■□□ 2.48
DDX55-211ENST00000544429 KDM6BO15054 1643 aa30.51■■■□□ 2.47
DDX55-211ENST00000544429 COL17A1Q9UMD9 1497 aaPredicted RBP30.46■■■□□ 2.47
DDX55-211ENST00000544429 NEO1Q92859 1461 aa30.43■■■□□ 2.46
DDX55-211ENST00000544429 ARAP3Q8WWN8 1544 aa30.42■■■□□ 2.46
DDX55-211ENST00000544429 MYO5CQ9NQX4 1742 aa30.42■■■□□ 2.46
DDX55-211ENST00000544429 TIAM1Q13009 1591 aa30.41■■■□□ 2.46
DDX55-211ENST00000544429 PLCH2O75038 1416 aa30.41■■■□□ 2.46
DDX55-211ENST00000544429 PHLDB1Q86UU1 1377 aa30.41■■■□□ 2.46
DDX55-211ENST00000544429 MAP3K1Q13233 1512 aa30.4■■■□□ 2.46
DDX55-211ENST00000544429 EHBP1L1Q8N3D4 1523 aa30.37■■■□□ 2.45
DDX55-211ENST00000544429 CFAP74Q9C0B2 1584 aa30.37■■■□□ 2.45
DDX55-211ENST00000544429 FANCAO15360 1455 aa30.35■■■□□ 2.45
DDX55-211ENST00000544429 MTUS2Q5JR59 1369 aa30.33■■■□□ 2.45
DDX55-211ENST00000544429 CDC42BPBQ9Y5S2 1711 aa30.33■■■□□ 2.45
DDX55-211ENST00000544429 CDC42BPAQ5VT25 1732 aa30.32■■■□□ 2.44
DDX55-211ENST00000544429 PREX2Q70Z35 1606 aa30.32■■■□□ 2.44
DDX55-211ENST00000544429 AKNAQ7Z591 1439 aa30.28■■■□□ 2.44
DDX55-211ENST00000544429 LRRC9Q6ZRR7 1453 aa30.27■■■□□ 2.44
DDX55-211ENST00000544429 GPATCH8Q9UKJ3 1502 aaKnown RBP30.24■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms