RNA–Protein interactions for RNA: ENST00000544429.5

DDX55-211, Transcript of DEAD-box helicase 55, humanhuman

TSL 4

Gene DDX55, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-211ENST00000544429 NISCHQ9Y2I1 1504 aa46.54■■■■■ 5.04
DDX55-211ENST00000544429 CCDC180Q9P1Z9 1646 aa41.36■■■■■ 4.21
DDX55-211ENST00000544429 ABCC9O60706 1549 aa40.18■■■■■ 4.02
DDX55-211ENST00000544429 ZCCHC6Q5VYS8 1495 aaKnown RBP38.82■■■■□ 3.81
DDX55-211ENST00000544429 NACADO15069 1562 aa38.82■■■■□ 3.8
DDX55-211ENST00000544429 RB1CC1Q8TDY2 1594 aa38.78■■■■□ 3.8
DDX55-211ENST00000544429 MYO15BQ96JP2 1530 aa38.71■■■■□ 3.79
DDX55-211ENST00000544429 DCAF1Q9Y4B6 1507 aa38.58■■■■□ 3.77
DDX55-211ENST00000544429 DCAF8L2P0C7V8 631 aa38.54■■■■□ 3.76
DDX55-211ENST00000544429 UNC13AQ9UPW8 1703 aa38.01■■■■□ 3.67
DDX55-211ENST00000544429 BICRAQ9NZM4 1560 aa37.69■■■■□ 3.62
DDX55-211ENST00000544429 SCRIBQ14160 1630 aa37.63■■■■□ 3.61
DDX55-211ENST00000544429 PABPN1Q86U42 306 aaKnown RBP eCLIP37.52■■■■□ 3.6
DDX55-211ENST00000544429 SHROOM4Q9ULL8 1493 aa37.31■■■■□ 3.56
DDX55-211ENST00000544429 DNAJC5BQ9UF47 199 aa36.79■■■■□ 3.48
DDX55-211ENST00000544429 EIF4G1Q04637 1599 aaKnown RBP36.62■■■■□ 3.45
DDX55-211ENST00000544429 CC2D2AQ9P2K1 1620 aa36.42■■■■□ 3.42
DDX55-211ENST00000544429 CECR2Q9BXF3 1484 aa36.21■■■■□ 3.39
DDX55-211ENST00000544429 SMARCA4P51532 1647 aa36.08■■■■□ 3.37
DDX55-211ENST00000544429 BAZ1AQ9NRL2 1556 aaPredicted RBP36.04■■■■□ 3.36
DDX55-211ENST00000544429 MROH2BQ7Z745 1585 aa35.85■■■■□ 3.33
DDX55-211ENST00000544429 ATAD2BQ9ULI0 1458 aa35.84■■■■□ 3.33
DDX55-211ENST00000544429 NCAPD3P42695 1498 aa35.82■■■■□ 3.32
DDX55-211ENST00000544429 PEG3Q9GZU2 1588 aa35.81■■■■□ 3.32
DDX55-211ENST00000544429 SMARCA2P51531 1590 aa35.79■■■■□ 3.32
DDX55-211ENST00000544429 HMGXB3Q12766 1538 aa35.67■■■■□ 3.3
DDX55-211ENST00000544429 RSF1Q96T23 1441 aaPredicted RBP35.49■■■■□ 3.27
DDX55-211ENST00000544429 BAZ1BQ9UIG0 1483 aaKnown RBP35.49■■■■□ 3.27
DDX55-211ENST00000544429 WIZO95785 1651 aa35.47■■■■□ 3.27
DDX55-211ENST00000544429 TOP2AP11388 1531 aaKnown RBP35.11■■■■□ 3.21
DDX55-211ENST00000544429 NESP48681 1621 aa34.85■■■■□ 3.17
DDX55-211ENST00000544429 LAMC3Q9Y6N6 1575 aa34.84■■■■□ 3.17
DDX55-211ENST00000544429 CADPSQ9ULU8 1353 aa34.73■■■■□ 3.15
DDX55-211ENST00000544429 CCDC88BA6NC98 1476 aa34.67■■■■□ 3.14
DDX55-211ENST00000544429 CFTRP13569 1480 aa34.6■■■■□ 3.13
DDX55-211ENST00000544429 ERCC6Q03468 1493 aa34.57■■■■□ 3.12
DDX55-211ENST00000544429 PDS5BQ9NTI5 1447 aa34.53■■■■□ 3.12
DDX55-211ENST00000544429 SUPT5HO00267 1087 aaKnown RBP34.5■■■■□ 3.11
DDX55-211ENST00000544429 KIF21AQ7Z4S6 1674 aa34.49■■■■□ 3.11
DDX55-211ENST00000544429 PRDM2Q13029 1718 aa34.41■■■■□ 3.1
DDX55-211ENST00000544429 THOC2Q8NI27 1593 aaKnown RBP34.37■■■■□ 3.09
DDX55-211ENST00000544429 FANCD2Q9BXW9 1451 aa34.33■■■■□ 3.09
DDX55-211ENST00000544429 CUX2O14529 1486 aa34.27■■■■□ 3.08
DDX55-211ENST00000544429 CEP164Q9UPV0 1460 aa34.26■■■■□ 3.07
DDX55-211ENST00000544429 MRC2Q9UBG0 1479 aa34.2■■■■□ 3.06
DDX55-211ENST00000544429 WDR62O43379 1518 aa34.13■■■■□ 3.05
DDX55-211ENST00000544429 URB2Q14146 1524 aaKnown RBP34.01■■■■□ 3.04
DDX55-211ENST00000544429 ABCC8Q09428 1581 aa33.81■■■■□ 3
DDX55-211ENST00000544429 TOPBP1Q92547 1522 aa33.81■■■■□ 3
DDX55-211ENST00000544429 DNMBPQ6XZF7 1577 aa33.8■■■■□ 3
DDX55-211ENST00000544429 CUX1P39880 1505 aa33.63■■■□□ 2.97
DDX55-211ENST00000544429 POLA1P09884 1462 aaPredicted RBP33.54■■■□□ 2.96
DDX55-211ENST00000544429 IFT140Q96RY7 1462 aa33.54■■■□□ 2.96
DDX55-211ENST00000544429 TARBP1Q13395 1621 aaKnown RBP33.5■■■□□ 2.95
DDX55-211ENST00000544429 FGD5Q6ZNL6 1462 aa33.46■■■□□ 2.95
DDX55-211ENST00000544429 WRNQ14191 1432 aaPredicted RBP eCLIP33.42■■■□□ 2.94
DDX55-211ENST00000544429 BIVM-ERCC5R4GMW8 1640 aa33.42■■■□□ 2.94
DDX55-211ENST00000544429 TOP2BQ02880 1626 aa33.39■■■□□ 2.94
DDX55-211ENST00000544429 ZNF608Q9ULD9 1512 aaPredicted RBP33.39■■■□□ 2.94
DDX55-211ENST00000544429 SYNJ1O43426 1573 aa33.38■■■□□ 2.93
DDX55-211ENST00000544429 RAD54L2Q9Y4B4 1467 aa33.35■■■□□ 2.93
DDX55-211ENST00000544429 SOGA1O94964 1423 aa33.35■■■□□ 2.93
DDX55-211ENST00000544429 EIF4G3O43432 1585 aaKnown RBP33.29■■■□□ 2.92
DDX55-211ENST00000544429 WDR97A6NE52 1622 aa33.28■■■□□ 2.92
DDX55-211ENST00000544429 AQRO60306 1485 aaKnown RBP eCLIP33.18■■■□□ 2.91e-6■■■■■ 42.9
DDX55-211ENST00000544429 ABCA10Q8WWZ4 1543 aa33.18■■■□□ 2.9
DDX55-211ENST00000544429 TDRD9Q8NDG6 1382 aaKnown RBP33.13■■■□□ 2.89
DDX55-211ENST00000544429 ABCA5Q8WWZ7 1642 aa33.06■■■□□ 2.88
DDX55-211ENST00000544429 DNAJC5Q9H3Z4 198 aa33.01■■■□□ 2.87
DDX55-211ENST00000544429 GAPVD1Q14C86 1478 aa32.99■■■□□ 2.87
DDX55-211ENST00000544429 GRIN2BQ13224 1484 aa32.97■■■□□ 2.87
DDX55-211ENST00000544429 PBRM1Q86U86 1689 aa32.96■■■□□ 2.87
DDX55-211ENST00000544429 SNAPC4Q5SXM2 1469 aa32.89■■■□□ 2.86
DDX55-211ENST00000544429 MAGI1Q96QZ7 1491 aaPredicted RBP32.89■■■□□ 2.86
DDX55-211ENST00000544429 CHD1O14646 1710 aa32.84■■■□□ 2.85
DDX55-211ENST00000544429 ERICH3Q5RHP9 1530 aa32.79■■■□□ 2.84
DDX55-211ENST00000544429 OSCARQ8IYS5 282 aa32.78■■■□□ 2.84
DDX55-211ENST00000544429 SYNJ2O15056 1496 aa32.75■■■□□ 2.83
DDX55-211ENST00000544429 ADAMTS12P58397 1594 aa32.7■■■□□ 2.83
DDX55-211ENST00000544429 KIF27Q86VH2 1401 aa32.69■■■□□ 2.82
DDX55-211ENST00000544429 FHAD1B1AJZ9 1412 aa32.62■■■□□ 2.81
DDX55-211ENST00000544429 TRIM41Q8WV44 630 aa32.62■■■□□ 2.81
DDX55-211ENST00000544429 FBLN2P98095 1184 aa32.61■■■□□ 2.81
DDX55-211ENST00000544429 CHMP7Q8WUX9 453 aaPredicted RBP32.61■■■□□ 2.81
DDX55-211ENST00000544429 IGF1RP08069 1367 aa32.58■■■□□ 2.81
DDX55-211ENST00000544429 GRIN2AQ12879 1464 aa32.56■■■□□ 2.8
DDX55-211ENST00000544429 CLASP1Q7Z460 1538 aa32.53■■■□□ 2.8
DDX55-211ENST00000544429 CUL7Q14999 1698 aa32.51■■■□□ 2.79
DDX55-211ENST00000544429 RUSC2Q8N2Y8 1516 aa32.47■■■□□ 2.79
DDX55-211ENST00000544429 NUP160Q12769 1436 aa32.45■■■□□ 2.79
DDX55-211ENST00000544429 CEP170Q5SW79 1584 aa32.42■■■□□ 2.78
DDX55-211ENST00000544429 CHIC1Q5VXU3 224 aa32.4■■■□□ 2.78
DDX55-211ENST00000544429 CARMIL1Q5VZK9 1371 aa32.35■■■□□ 2.77
DDX55-211ENST00000544429 ARHGEF11O15085 1522 aa32.33■■■□□ 2.77
DDX55-211ENST00000544429 RIMBP3CA6NJZ7 1639 aa32.33■■■□□ 2.77
DDX55-211ENST00000544429 RIMBP3BA6NNM3 1639 aa32.33■■■□□ 2.77
DDX55-211ENST00000544429 RIMBP3Q9UFD9 1639 aa32.33■■■□□ 2.77
DDX55-211ENST00000544429 SHROOM2Q13796 1616 aa32.23■■■□□ 2.75
DDX55-211ENST00000544429 EEA1Q15075 1411 aa32.19■■■□□ 2.74
DDX55-211ENST00000544429 RAPGEF2Q9Y4G8 1499 aa32.19■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms