RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 TARBP1Q13395 1621 aaKnown RBP20.88■□□□□ 0.93
MSH2-206ENST00000543555 FBLN2P98095 1184 aa20.88■□□□□ 0.93
MSH2-206ENST00000543555 GAPVD1Q14C86 1478 aa20.87■□□□□ 0.93
MSH2-206ENST00000543555 RRBP1Q9P2E9 1410 aaKnown RBP20.86■□□□□ 0.93
MSH2-206ENST00000543555 MAP3K1Q13233 1512 aa20.85■□□□□ 0.93
MSH2-206ENST00000543555 IFT140Q96RY7 1462 aa20.83■□□□□ 0.92
MSH2-206ENST00000543555 TIAM1Q13009 1591 aa20.83■□□□□ 0.92
MSH2-206ENST00000543555 ABCA5Q8WWZ7 1642 aa20.82■□□□□ 0.92
MSH2-206ENST00000543555 FHAD1B1AJZ9 1412 aa20.81■□□□□ 0.92
MSH2-206ENST00000543555 EFCAB5A4FU69 1503 aa20.79■□□□□ 0.92
MSH2-206ENST00000543555 CTTNBP2Q8WZ74 1663 aa20.78■□□□□ 0.92
MSH2-206ENST00000543555 CCNB3Q8WWL7 1395 aa20.76■□□□□ 0.91
MSH2-206ENST00000543555 PCF11O94913 1555 aaKnown RBP20.75■□□□□ 0.91
MSH2-206ENST00000543555 LRRC9Q6ZRR7 1453 aa20.73■□□□□ 0.91
MSH2-206ENST00000543555 FHOD3Q2V2M9 1422 aa20.73■□□□□ 0.91
MSH2-206ENST00000543555 P3H3Q8IVL6 736 aa20.73■□□□□ 0.91
MSH2-206ENST00000543555 CFAP43Q8NDM7 1665 aa20.72■□□□□ 0.91
MSH2-206ENST00000543555 EIF4G3O43432 1585 aaKnown RBP20.71■□□□□ 0.91
MSH2-206ENST00000543555 FYCO1Q9BQS8 1478 aa20.69■□□□□ 0.9
MSH2-206ENST00000543555 CHMP7Q8WUX9 453 aaPredicted RBP20.68■□□□□ 0.9
MSH2-206ENST00000543555 SNAPC4Q5SXM2 1469 aa20.68■□□□□ 0.9
MSH2-206ENST00000543555 GRIN2BQ13224 1484 aa20.67■□□□□ 0.9
MSH2-206ENST00000543555 DHX57Q6P158 1386 aaKnown RBP20.66■□□□□ 0.9
MSH2-206ENST00000543555 CASKIN1Q8WXD9 1431 aa20.66■□□□□ 0.9
MSH2-206ENST00000543555 CLSPNQ9HAW4 1339 aa20.66■□□□□ 0.9
MSH2-206ENST00000543555 DIEXFQ68CQ4 756 aaKnown RBP20.65■□□□□ 0.9
MSH2-206ENST00000543555 ZNF316A6NFI3 1004 aaPredicted RBP20.63■□□□□ 0.89
MSH2-206ENST00000543555 FMN1Q68DA7 1419 aa20.62■□□□□ 0.89
MSH2-206ENST00000543555 PBRM1Q86U86 1689 aa20.62■□□□□ 0.89
MSH2-206ENST00000543555 SAMD9Q5K651 1589 aa20.62■□□□□ 0.89
MSH2-206ENST00000543555 PHLDB1Q86UU1 1377 aa20.62■□□□□ 0.89
MSH2-206ENST00000543555 ATP1B4Q9UN42 357 aaPredicted RBP20.6■□□□□ 0.89
MSH2-206ENST00000543555 ITGAEP38570 1179 aa20.56■□□□□ 0.88
MSH2-206ENST00000543555 ADAMTS12P58397 1594 aa20.51■□□□□ 0.87
MSH2-206ENST00000543555 RAB3GAP2Q9H2M9 1393 aa20.5■□□□□ 0.87
MSH2-206ENST00000543555 FAM50AQ14320 339 aaKnown RBP20.47■□□□□ 0.87
MSH2-206ENST00000543555 SETD5Q9C0A6 1442 aa20.46■□□□□ 0.87
MSH2-206ENST00000543555 GRIN2AQ12879 1464 aa20.45■□□□□ 0.86
MSH2-206ENST00000543555 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.45■□□□□ 0.86
MSH2-206ENST00000543555 SYNJ2O15056 1496 aa20.44■□□□□ 0.86
MSH2-206ENST00000543555 MAGI1Q96QZ7 1491 aaPredicted RBP20.44■□□□□ 0.86
MSH2-206ENST00000543555 LRRIQ1Q96JM4 1722 aa20.44■□□□□ 0.86
MSH2-206ENST00000543555 IQGAP2Q13576 1575 aa20.44■□□□□ 0.86
MSH2-206ENST00000543555 MTUS2Q5JR59 1369 aa20.43■□□□□ 0.86
MSH2-206ENST00000543555 ARID3CA6NKF2 412 aa20.4■□□□□ 0.86
MSH2-206ENST00000543555 FGD6Q6ZV73 1430 aa20.39■□□□□ 0.86
MSH2-206ENST00000543555 MAPKBP1O60336 1514 aa20.38■□□□□ 0.85
MSH2-206ENST00000543555 EHBP1L1Q8N3D4 1523 aa20.36■□□□□ 0.85
MSH2-206ENST00000543555 CCDC18Q5T9S5 1454 aa20.35■□□□□ 0.85
MSH2-206ENST00000543555 CEP170Q5SW79 1584 aa20.35■□□□□ 0.85
MSH2-206ENST00000543555 NCOA2Q15596 1464 aa20.34■□□□□ 0.85
MSH2-206ENST00000543555 JPH4Q96JJ6 628 aa20.34■□□□□ 0.85
MSH2-206ENST00000543555 UGGT2Q9NYU1 1516 aa20.33■□□□□ 0.85
MSH2-206ENST00000543555 HECW1Q76N89 1606 aa20.33■□□□□ 0.85
MSH2-206ENST00000543555 SUPT6HQ7KZ85 1726 aaKnown RBP20.33■□□□□ 0.84
MSH2-206ENST00000543555 CHD1O14646 1710 aa20.32■□□□□ 0.84
MSH2-206ENST00000543555 MYOM3Q5VTT5 1437 aa20.31■□□□□ 0.84
MSH2-206ENST00000543555 MAGI3Q5TCQ9 1506 aa20.29■□□□□ 0.84
MSH2-206ENST00000543555 ARHGEF11O15085 1522 aa20.28■□□□□ 0.84
MSH2-206ENST00000543555 KIAA0586Q9BVV6 1533 aa20.28■□□□□ 0.84
MSH2-206ENST00000543555 EPRSP07814 1512 aaKnown RBP20.26■□□□□ 0.83
MSH2-206ENST00000543555 SCAF1Q9H7N4 1312 aaKnown RBP20.25■□□□□ 0.83
MSH2-206ENST00000543555 ACIN1Q9UKV3 1341 aaKnown RBP20.25■□□□□ 0.83
MSH2-206ENST00000543555 NUP160Q12769 1436 aa20.24■□□□□ 0.83
MSH2-206ENST00000543555 PTPRKQ15262 1439 aa20.23■□□□□ 0.83
MSH2-206ENST00000543555 MIER1Q8N108 512 aa20.23■□□□□ 0.83
MSH2-206ENST00000543555 KIAA0556O60303 1618 aa20.23■□□□□ 0.83
MSH2-206ENST00000543555 DISP1Q96F81 1524 aa20.22■□□□□ 0.83
MSH2-206ENST00000543555 CENPBP07199 599 aaPredicted RBP20.22■□□□□ 0.83
MSH2-206ENST00000543555 PTPN23Q9H3S7 1636 aa20.21■□□□□ 0.83
MSH2-206ENST00000543555 NEUROD1Q13562 356 aa20.21■□□□□ 0.83
MSH2-206ENST00000543555 HFM1A2PYH4 1435 aa20.21■□□□□ 0.83
MSH2-206ENST00000543555 CDK13Q14004 1512 aaKnown RBP20.21■□□□□ 0.83
MSH2-206ENST00000543555 OSCARQ8IYS5 282 aa20.2■□□□□ 0.82
MSH2-206ENST00000543555 TCOF1Q13428 1488 aaKnown RBP20.17■□□□□ 0.82
MSH2-206ENST00000543555 PRG4Q92954 1404 aaPredicted RBP20.17■□□□□ 0.82
MSH2-206ENST00000543555 SIN3AQ96ST3 1273 aa20.15■□□□□ 0.82
MSH2-206ENST00000543555 NAIPQ13075 1403 aa20.15■□□□□ 0.82
MSH2-206ENST00000543555 ERCC6L2Q5T890 1561 aa20.13■□□□□ 0.81
MSH2-206ENST00000543555 TIMELESSQ9UNS1 1208 aa20.12■□□□□ 0.81
MSH2-206ENST00000543555 UACAQ9BZF9 1416 aa20.12■□□□□ 0.81
MSH2-206ENST00000543555 MIA2Q96PC5 1412 aa20.12■□□□□ 0.81
MSH2-206ENST00000543555 NUP153P49790 1475 aaKnown RBP20.11■□□□□ 0.81
MSH2-206ENST00000543555 RAPGEF6Q8TEU7 1601 aa20.11■□□□□ 0.81
MSH2-206ENST00000543555 CARMIL2Q6F5E8 1435 aa20.06■□□□□ 0.8
MSH2-206ENST00000543555 AKNAQ7Z591 1439 aa20.05■□□□□ 0.8
MSH2-206ENST00000543555 YTHDC1Q96MU7 727 aaKnown RBP20.05■□□□□ 0.8
MSH2-206ENST00000543555 PLB1Q6P1J6 1458 aa20.05■□□□□ 0.8
MSH2-206ENST00000543555 GCC2Q8IWJ2 1684 aa20.04■□□□□ 0.8
MSH2-206ENST00000543555 CDK11AQ9UQ88 783 aaPredicted RBP20.01■□□□□ 0.79
MSH2-206ENST00000543555 PTPRGP23470 1445 aa20■□□□□ 0.79
MSH2-206ENST00000543555 RRP7BPQ9NSQ0 103 aa20■□□□□ 0.79
MSH2-206ENST00000543555 CHIC2Q9UKJ5 165 aa20■□□□□ 0.79
MSH2-206ENST00000543555 PPP1R15AO75807 674 aaPredicted RBP20■□□□□ 0.79
MSH2-206ENST00000543555 CLASP1Q7Z460 1538 aa19.99■□□□□ 0.79
MSH2-206ENST00000543555 TROQ12816 1431 aaPredicted RBP19.96■□□□□ 0.79
MSH2-206ENST00000543555 TONSLQ96HA7 1378 aa19.96■□□□□ 0.79
MSH2-206ENST00000543555 GTF3C3Q9Y5Q9 886 aa19.96■□□□□ 0.79
MSH2-206ENST00000543555 DAPK1P53355 1430 aa19.94■□□□□ 0.78
MSH2-206ENST00000543555 KDM6BO15054 1643 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms