RNA–Protein interactions for RNA: ENST00000543264.6

SHD-201, Transcript of Src homology 2 domain containing transforming protein D, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHD, Length 2,577 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHD-201ENST00000543264 RBM19Q9Y4C8 960 aaKnown RBP33.6■■■□□ 2.97
SHD-201ENST00000543264 HIRIP3Q9BW71 556 aaPredicted RBP33.59■■■□□ 2.97
SHD-201ENST00000543264 TRIM52Q96A61 297 aa33.58■■■□□ 2.97
SHD-201ENST00000543264 BCL11AQ9H165 835 aa33.58■■■□□ 2.97
SHD-201ENST00000543264 FAM50AQ14320 339 aaKnown RBP33.54■■■□□ 2.96
SHD-201ENST00000543264 ANP32CO43423 234 aa33.48■■■□□ 2.95
SHD-201ENST00000543264 TIAM1Q13009 1591 aa33.47■■■□□ 2.95
SHD-201ENST00000543264 CCER2I3L3R5 266 aa33.46■■■□□ 2.95
SHD-201ENST00000543264 PHLDB1Q86UU1 1377 aa33.44■■■□□ 2.94
SHD-201ENST00000543264 TIMELESSQ9UNS1 1208 aa33.4■■■□□ 2.94
SHD-201ENST00000543264 LRRC9Q6ZRR7 1453 aa33.39■■■□□ 2.94
SHD-201ENST00000543264 MAP3K1Q13233 1512 aa33.37■■■□□ 2.93
SHD-201ENST00000543264 ATP1B4Q9UN42 357 aaPredicted RBP33.32■■■□□ 2.93
SHD-201ENST00000543264 IGF1RP08069 1367 aa33.31■■■□□ 2.92
SHD-201ENST00000543264 P3H3Q8IVL6 736 aa33.25■■■□□ 2.91
SHD-201ENST00000543264 CARMIL1Q5VZK9 1371 aa33.2■■■□□ 2.91
SHD-201ENST00000543264 MSH5O43196 834 aa33.2■■■□□ 2.91
SHD-201ENST00000543264 CFTRP13569 1480 aa33.2■■■□□ 2.9
SHD-201ENST00000543264 NCAPD3P42695 1498 aa33.18■■■□□ 2.9
SHD-201ENST00000543264 FHAD1B1AJZ9 1412 aa33.15■■■□□ 2.9
SHD-201ENST00000543264 HMGXB3Q12766 1538 aa33.15■■■□□ 2.9
SHD-201ENST00000543264 TONSLQ96HA7 1378 aa33.15■■■□□ 2.9
SHD-201ENST00000543264 IRX6P78412 446 aaPredicted RBP33.11■■■□□ 2.89
SHD-201ENST00000543264 HNRNPUQ00839 825 aaKnown RBP eCLIP33.1■■■□□ 2.89
SHD-201ENST00000543264 PCF11O94913 1555 aaKnown RBP33.06■■■□□ 2.88
SHD-201ENST00000543264 CFAP43Q8NDM7 1665 aa33.06■■■□□ 2.88
SHD-201ENST00000543264 CDK11AQ9UQ88 783 aaPredicted RBP33.05■■■□□ 2.88
SHD-201ENST00000543264 FANCIQ9NVI1 1328 aa32.99■■■□□ 2.87
SHD-201ENST00000543264 FHOD3Q2V2M9 1422 aa32.97■■■□□ 2.87
SHD-201ENST00000543264 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.95■■■□□ 2.87
SHD-201ENST00000543264 ERICH6Q7L0X2 663 aa32.95■■■□□ 2.87
SHD-201ENST00000543264 CCDC18Q5T9S5 1454 aa32.91■■■□□ 2.86
SHD-201ENST00000543264 FGD5Q6ZNL6 1462 aa32.91■■■□□ 2.86
SHD-201ENST00000543264 FGD6Q6ZV73 1430 aa32.86■■■□□ 2.85
SHD-201ENST00000543264 FYCO1Q9BQS8 1478 aa32.85■■■□□ 2.85
SHD-201ENST00000543264 UACAQ9BZF9 1416 aa32.85■■■□□ 2.85
SHD-201ENST00000543264 CASKIN1Q8WXD9 1431 aa32.83■■■□□ 2.85
SHD-201ENST00000543264 PTPRKQ15262 1439 aa32.81■■■□□ 2.84
SHD-201ENST00000543264 PRDM2Q13029 1718 aa32.79■■■□□ 2.84
SHD-201ENST00000543264 HFM1A2PYH4 1435 aa32.78■■■□□ 2.84
SHD-201ENST00000543264 WASHC2AQ641Q2 1341 aa32.78■■■□□ 2.84
SHD-201ENST00000543264 PPP4R2Q9NY27 417 aa32.76■■■□□ 2.84
SHD-201ENST00000543264 HSPA5P11021 654 aaKnown RBP32.76■■■□□ 2.83
SHD-201ENST00000543264 ERICH6BQ5W0A0 696 aa32.73■■■□□ 2.83
SHD-201ENST00000543264 MTUS2Q5JR59 1369 aa32.73■■■□□ 2.83
SHD-201ENST00000543264 PTPN23Q9H3S7 1636 aa32.73■■■□□ 2.83
SHD-201ENST00000543264 CADPSQ9ULU8 1353 aa32.72■■■□□ 2.83
SHD-201ENST00000543264 CCDC184Q52MB2 194 aa32.71■■■□□ 2.83
SHD-201ENST00000543264 AQRO60306 1485 aaKnown RBP eCLIP32.71■■■□□ 2.83
SHD-201ENST00000543264 NAIPQ13075 1403 aa32.7■■■□□ 2.83
SHD-201ENST00000543264 KDM5BQ9UGL1 1544 aa32.68■■■□□ 2.82
SHD-201ENST00000543264 EFCAB5A4FU69 1503 aa32.68■■■□□ 2.82
SHD-201ENST00000543264 FAM9BQ8IZU0 186 aa32.64■■■□□ 2.82
SHD-201ENST00000543264 B4GALNT3Q6L9W6 998 aa32.64■■■□□ 2.81
SHD-201ENST00000543264 EIF4G2P78344 907 aaKnown RBP eCLIP32.63■■■□□ 2.81
SHD-201ENST00000543264 FMN1Q68DA7 1419 aa32.62■■■□□ 2.81
SHD-201ENST00000543264 RRP7BPQ9NSQ0 103 aa32.59■■■□□ 2.81
SHD-201ENST00000543264 RAD54L2Q9Y4B4 1467 aa32.57■■■□□ 2.8
SHD-201ENST00000543264 CHIC2Q9UKJ5 165 aa32.55■■■□□ 2.8
SHD-201ENST00000543264 CNTLNQ9NXG0 1405 aa32.54■■■□□ 2.8
SHD-201ENST00000543264 SNAPC4Q5SXM2 1469 aa32.54■■■□□ 2.8
SHD-201ENST00000543264 MRS2Q9HD23 443 aa32.54■■■□□ 2.8
SHD-201ENST00000543264 MYOM3Q5VTT5 1437 aa32.54■■■□□ 2.8
SHD-201ENST00000543264 NCOA2Q15596 1464 aa32.53■■■□□ 2.8
SHD-201ENST00000543264 PRKRIP1Q9H875 184 aaPredicted RBP32.53■■■□□ 2.8
SHD-201ENST00000543264 C11orf95C9JLR9 678 aaPredicted RBP32.51■■■□□ 2.8
SHD-201ENST00000543264 MYT1LQ9UL68 1186 aa32.48■■■□□ 2.79
SHD-201ENST00000543264 CC2D2AQ9P2K1 1620 aa32.47■■■□□ 2.79
SHD-201ENST00000543264 CTTNBP2Q8WZ74 1663 aa32.46■■■□□ 2.79
SHD-201ENST00000543264 ZBED9Q6R2W3 1325 aa32.46■■■□□ 2.79
SHD-201ENST00000543264 DEKP35659 375 aaKnown RBP32.46■■■□□ 2.79
SHD-201ENST00000543264 L3MBTL2Q969R5 705 aa32.44■■■□□ 2.78
SHD-201ENST00000543264 ABCA10Q8WWZ4 1543 aa32.43■■■□□ 2.78
SHD-201ENST00000543264 FANCD2Q9BXW9 1451 aa32.43■■■□□ 2.78
SHD-201ENST00000543264 CCDC7Q96M83 1385 aa32.42■■■□□ 2.78
SHD-201ENST00000543264 DENND4BO75064 1496 aaPredicted RBP32.4■■■□□ 2.78
SHD-201ENST00000543264 LRRIQ1Q96JM4 1722 aa32.39■■■□□ 2.78
SHD-201ENST00000543264 FOXD1Q16676 465 aa32.38■■■□□ 2.77
SHD-201ENST00000543264 SUPT6HQ7KZ85 1726 aaKnown RBP32.37■■■□□ 2.77
SHD-201ENST00000543264 MPHOSPH9Q99550 1183 aa32.37■■■□□ 2.77
SHD-201ENST00000543264 POLA1P09884 1462 aaPredicted RBP32.37■■■□□ 2.77
SHD-201ENST00000543264 CUL7Q14999 1698 aa32.36■■■□□ 2.77
SHD-201ENST00000543264 NCOA1Q15788 1441 aa32.36■■■□□ 2.77
SHD-201ENST00000543264 NOP58Q9Y2X3 529 aaKnown RBP32.36■■■□□ 2.77
SHD-201ENST00000543264 NBR1Q14596 966 aa32.32■■■□□ 2.76
SHD-201ENST00000543264 GRIN2BQ13224 1484 aa32.32■■■□□ 2.76
SHD-201ENST00000543264 DNMBPQ6XZF7 1577 aa32.31■■■□□ 2.76
SHD-201ENST00000543264 PAK3O75914 559 aaPredicted RBP32.3■■■□□ 2.76
SHD-201ENST00000543264 EHBP1L1Q8N3D4 1523 aa32.29■■■□□ 2.76
SHD-201ENST00000543264 HECW1Q76N89 1606 aa32.28■■■□□ 2.76
SHD-201ENST00000543264 TOPBP1Q92547 1522 aa32.28■■■□□ 2.76
SHD-201ENST00000543264 NBPF8Q3BBV2 869 aa32.27■■■□□ 2.76
SHD-201ENST00000543264 KDM6BO15054 1643 aa32.27■■■□□ 2.76
SHD-201ENST00000543264 UGGT2Q9NYU1 1516 aa32.27■■■□□ 2.76
SHD-201ENST00000543264 CNGB1Q14028 1251 aaPredicted RBP32.25■■■□□ 2.75
SHD-201ENST00000543264 KIF7Q2M1P5 1343 aa32.24■■■□□ 2.75
SHD-201ENST00000543264 SAMD9Q5K651 1589 aa32.24■■■□□ 2.75
SHD-201ENST00000543264 GCC2Q8IWJ2 1684 aa32.23■■■□□ 2.75
SHD-201ENST00000543264 AKNAQ7Z591 1439 aa32.21■■■□□ 2.75
SHD-201ENST00000543264 MAGI3Q5TCQ9 1506 aa32.2■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms