RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 FAM69CQ0P6D2 419 aa15.38■□□□□ 0.05
CLSTN3-212ENST00000541770 JPH4Q96JJ6 628 aa15.38■□□□□ 0.05
CLSTN3-212ENST00000541770 TSPOAP1O95153 1857 aa15.35■□□□□ 0.05
CLSTN3-212ENST00000541770 RUSC2Q8N2Y8 1516 aa15.34■□□□□ 0.05
CLSTN3-212ENST00000541770 ABCC10Q5T3U5 1492 aa15.32■□□□□ 0.04
CLSTN3-212ENST00000541770 DIP2BQ9P265 1576 aa15.31■□□□□ 0.04
CLSTN3-212ENST00000541770 KDM6BO15054 1643 aa15.3■□□□□ 0.04
CLSTN3-212ENST00000541770 ADCY10Q96PN6 1610 aa15.3■□□□□ 0.04
CLSTN3-212ENST00000541770 MAPKBP1O60336 1514 aa15.29■□□□□ 0.04
CLSTN3-212ENST00000541770 TTBK1Q5TCY1 1321 aaPredicted RBP15.25■□□□□ 0.03
CLSTN3-212ENST00000541770 KDM4FA0A1W2PPD8 638 aa15.21■□□□□ 0.03
CLSTN3-212ENST00000541770 ILDR1Q86SU0 546 aaPredicted RBP15.2■□□□□ 0.02
CLSTN3-212ENST00000541770 KIAA0586Q9BVV6 1533 aa15.19■□□□□ 0.02
CLSTN3-212ENST00000541770 CUL7Q14999 1698 aa15.19■□□□□ 0.02
CLSTN3-212ENST00000541770 PTPRGP23470 1445 aa15.14■□□□□ 0.01
CLSTN3-212ENST00000541770 KIF27Q86VH2 1401 aa15.14■□□□□ 0.01
CLSTN3-212ENST00000541770 IGF1RP08069 1367 aa15.12■□□□□ 0.01
CLSTN3-212ENST00000541770 PPRC1Q5VV67 1664 aaKnown RBP15.09■□□□□ 0.01
CLSTN3-212ENST00000541770 CARMIL2Q6F5E8 1435 aa15.09■□□□□ 0.01
CLSTN3-212ENST00000541770 ABCC2Q92887 1545 aa15.08■□□□□ 0.01
CLSTN3-212ENST00000541770 ASXL2Q76L83 1435 aa15.08■□□□□ 0
CLSTN3-212ENST00000541770 TNIKQ9UKE5 1360 aa15.07■□□□□ 0
CLSTN3-212ENST00000541770 CARMIL1Q5VZK9 1371 aa15.06■□□□□ 0
CLSTN3-212ENST00000541770 ADGRL1O94910 1474 aa15.06■□□□□ 0
CLSTN3-212ENST00000541770 IQGAP2Q13576 1575 aa15.06■□□□□ 0
CLSTN3-212ENST00000541770 PLB1Q6P1J6 1458 aa15.05■□□□□ -0
CLSTN3-212ENST00000541770 GLI2P10070 1586 aa15.05■□□□□ -0
CLSTN3-212ENST00000541770 UACAQ9BZF9 1416 aa15□□□□□ -0.01
CLSTN3-212ENST00000541770 ZCCHC11Q5TAX3 1644 aaKnown RBP14.99□□□□□ -0.01
CLSTN3-212ENST00000541770 MAP3K4Q9Y6R4 1608 aa14.99□□□□□ -0.01
CLSTN3-212ENST00000541770 UHRF1BP1LA0JNW5 1464 aa14.99□□□□□ -0.01
CLSTN3-212ENST00000541770 EPRSP07814 1512 aaKnown RBP14.97□□□□□ -0.01
CLSTN3-212ENST00000541770 TEX14Q8IWB6 1497 aa14.96□□□□□ -0.01
CLSTN3-212ENST00000541770 COL17A1Q9UMD9 1497 aaPredicted RBP14.96□□□□□ -0.01
CLSTN3-212ENST00000541770 HECW2Q9P2P5 1572 aa14.96□□□□□ -0.01
CLSTN3-212ENST00000541770 DISP1Q96F81 1524 aa14.96□□□□□ -0.02
CLSTN3-212ENST00000541770 KDM5BQ9UGL1 1544 aa14.94□□□□□ -0.02
CLSTN3-212ENST00000541770 KIAA0556O60303 1618 aa14.92□□□□□ -0.02
CLSTN3-212ENST00000541770 UGGT2Q9NYU1 1516 aa14.9□□□□□ -0.02
CLSTN3-212ENST00000541770 RAPGEF2Q9Y4G8 1499 aa14.89□□□□□ -0.03
CLSTN3-212ENST00000541770 WDR7Q9Y4E6 1490 aa14.88□□□□□ -0.03
CLSTN3-212ENST00000541770 CTTNBP2Q8WZ74 1663 aa14.87□□□□□ -0.03
CLSTN3-212ENST00000541770 KCNH8Q96L42 1107 aa14.87□□□□□ -0.03
CLSTN3-212ENST00000541770 CFAP43Q8NDM7 1665 aa14.86□□□□□ -0.03
CLSTN3-212ENST00000541770 KIF21BO75037 1637 aa14.84□□□□□ -0.03
CLSTN3-212ENST00000541770 CD109Q6YHK3 1445 aa14.83□□□□□ -0.03
CLSTN3-212ENST00000541770 MAGI3Q5TCQ9 1506 aa14.79□□□□□ -0.04
CLSTN3-212ENST00000541770 ABCA8O94911 1581 aa14.78□□□□□ -0.04
CLSTN3-212ENST00000541770 GOLGA3Q08378 1498 aa14.78□□□□□ -0.04
CLSTN3-212ENST00000541770 ARID3CA6NKF2 412 aa14.77□□□□□ -0.05
CLSTN3-212ENST00000541770 FAM9AQ8IZU1 332 aaPredicted RBP14.72□□□□□ -0.05
CLSTN3-212ENST00000541770 P3H3Q8IVL6 736 aa14.71□□□□□ -0.05
CLSTN3-212ENST00000541770 ARAP3Q8WWN8 1544 aa14.68□□□□□ -0.06
CLSTN3-212ENST00000541770 FBXO41Q8TF61 875 aa14.68□□□□□ -0.06
CLSTN3-212ENST00000541770 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.67□□□□□ -0.06
CLSTN3-212ENST00000541770 HNRNPUL2Q1KMD3 747 aaKnown RBP14.67□□□□□ -0.06
CLSTN3-212ENST00000541770 ADAMTSL3P82987 1691 aa14.67□□□□□ -0.06
CLSTN3-212ENST00000541770 PTPRMP28827 1452 aa14.66□□□□□ -0.06
CLSTN3-212ENST00000541770 ABCA9Q8IUA7 1624 aa14.66□□□□□ -0.06
CLSTN3-212ENST00000541770 ARID4BQ4LE39 1312 aaPredicted RBP14.66□□□□□ -0.06
CLSTN3-212ENST00000541770 ATP10BO94823 1461 aa14.65□□□□□ -0.06
CLSTN3-212ENST00000541770 RAPGEF3O95398 923 aa14.65□□□□□ -0.06
CLSTN3-212ENST00000541770 BCORL1Q5H9F3 1711 aa14.63□□□□□ -0.07
CLSTN3-212ENST00000541770 MADDQ8WXG6 1647 aa14.63□□□□□ -0.07
CLSTN3-212ENST00000541770 RAPGEF6Q8TEU7 1601 aa14.62□□□□□ -0.07
CLSTN3-212ENST00000541770 PRXQ9BXM0 1461 aa14.62□□□□□ -0.07
CLSTN3-212ENST00000541770 PLPPR3Q6T4P5 718 aa14.61□□□□□ -0.07
CLSTN3-212ENST00000541770 RIMS1Q86UR5 1692 aaKnown RBP14.6□□□□□ -0.07
CLSTN3-212ENST00000541770 PHLDB1Q86UU1 1377 aa14.6□□□□□ -0.07
CLSTN3-212ENST00000541770 RANGAP1P46060 587 aaPredicted RBP14.59□□□□□ -0.07
CLSTN3-212ENST00000541770 NEO1Q92859 1461 aa14.58□□□□□ -0.08
CLSTN3-212ENST00000541770 PCF11O94913 1555 aaKnown RBP14.58□□□□□ -0.08
CLSTN3-212ENST00000541770 FRMPD1Q5SYB0 1578 aa14.58□□□□□ -0.08
CLSTN3-212ENST00000541770 SAMD9Q5K651 1589 aa14.56□□□□□ -0.08
CLSTN3-212ENST00000541770 CHIC1Q5VXU3 224 aa14.55□□□□□ -0.08
CLSTN3-212ENST00000541770 LMTK3Q96Q04 1460 aa14.54□□□□□ -0.08
CLSTN3-212ENST00000541770 ARHGEF40Q8TER5 1519 aa14.53□□□□□ -0.08
CLSTN3-212ENST00000541770 RICTORQ6R327 1708 aa14.52□□□□□ -0.08
CLSTN3-212ENST00000541770 DENND4BO75064 1496 aaPredicted RBP14.51□□□□□ -0.09
CLSTN3-212ENST00000541770 HSPA2P54652 639 aa14.51□□□□□ -0.09
CLSTN3-212ENST00000541770 CFAP74Q9C0B2 1584 aa14.51□□□□□ -0.09
CLSTN3-212ENST00000541770 NUP153P49790 1475 aaKnown RBP14.5□□□□□ -0.09
CLSTN3-212ENST00000541770 PLEKHD1A6NEE1 506 aa14.49□□□□□ -0.09
CLSTN3-212ENST00000541770 MLECQ14165 292 aa14.49□□□□□ -0.09
CLSTN3-212ENST00000541770 FHOD3Q2V2M9 1422 aa14.49□□□□□ -0.09
CLSTN3-212ENST00000541770 AKNAQ7Z591 1439 aa14.49□□□□□ -0.09
CLSTN3-212ENST00000541770 CSRNP3Q8WYN3 585 aa14.48□□□□□ -0.09
CLSTN3-212ENST00000541770 FER1L4A9Z1Z3 1794 aa14.47□□□□□ -0.09
CLSTN3-212ENST00000541770 FANCAO15360 1455 aa14.47□□□□□ -0.09
CLSTN3-212ENST00000541770 POGZQ7Z3K3 1410 aa14.47□□□□□ -0.09
CLSTN3-212ENST00000541770 SIGLEC1Q9BZZ2 1709 aa14.46□□□□□ -0.09
CLSTN3-212ENST00000541770 ZFYVE16Q7Z3T8 1539 aa14.46□□□□□ -0.1
CLSTN3-212ENST00000541770 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.46□□□□□ -0.1
CLSTN3-212ENST00000541770 TTC37Q6PGP7 1564 aa14.45□□□□□ -0.1
CLSTN3-212ENST00000541770 EFCAB5A4FU69 1503 aa14.45□□□□□ -0.1
CLSTN3-212ENST00000541770 YEATS2Q9ULM3 1422 aa14.43□□□□□ -0.1
CLSTN3-212ENST00000541770 ZMYM4Q5VZL5 1548 aa14.42□□□□□ -0.1
CLSTN3-212ENST00000541770 HECW1Q76N89 1606 aa14.42□□□□□ -0.1
CLSTN3-212ENST00000541770 CERKQ8TCT0 537 aa14.41□□□□□ -0.1
CLSTN3-212ENST00000541770 EEA1Q15075 1411 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms