RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 NISCHQ9Y2I1 1504 aa21.74■■□□□ 1.07
CLSTN3-212ENST00000541770 ABCC9O60706 1549 aa19.97■□□□□ 0.79
CLSTN3-212ENST00000541770 CCDC180Q9P1Z9 1646 aa19.65■□□□□ 0.74
CLSTN3-212ENST00000541770 DNAJC5BQ9UF47 199 aa18.91■□□□□ 0.62
CLSTN3-212ENST00000541770 RB1CC1Q8TDY2 1594 aa18.85■□□□□ 0.61
CLSTN3-212ENST00000541770 DCAF8L2P0C7V8 631 aa18.62■□□□□ 0.57
CLSTN3-212ENST00000541770 NACADO15069 1562 aa18.62■□□□□ 0.57
CLSTN3-212ENST00000541770 PABPN1Q86U42 306 aaKnown RBP eCLIP18.55■□□□□ 0.56
CLSTN3-212ENST00000541770 UNC13AQ9UPW8 1703 aa18.5■□□□□ 0.55
CLSTN3-212ENST00000541770 BICRAQ9NZM4 1560 aa18.29■□□□□ 0.52
CLSTN3-212ENST00000541770 MYO15BQ96JP2 1530 aa18.18■□□□□ 0.5
CLSTN3-212ENST00000541770 CC2D2AQ9P2K1 1620 aa18.01■□□□□ 0.47
CLSTN3-212ENST00000541770 CECR2Q9BXF3 1484 aa17.98■□□□□ 0.47
CLSTN3-212ENST00000541770 SCRIBQ14160 1630 aa17.96■□□□□ 0.47
CLSTN3-212ENST00000541770 ZCCHC6Q5VYS8 1495 aaKnown RBP17.95■□□□□ 0.46
CLSTN3-212ENST00000541770 SHROOM4Q9ULL8 1493 aa17.94■□□□□ 0.46
CLSTN3-212ENST00000541770 EIF4G1Q04637 1599 aaKnown RBP17.88■□□□□ 0.45
CLSTN3-212ENST00000541770 DCAF1Q9Y4B6 1507 aa17.88■□□□□ 0.45
CLSTN3-212ENST00000541770 DNAJC5Q9H3Z4 198 aa17.67■□□□□ 0.42
CLSTN3-212ENST00000541770 ERCC6Q03468 1493 aa17.28■□□□□ 0.36
CLSTN3-212ENST00000541770 CUX2O14529 1486 aa17.26■□□□□ 0.35
CLSTN3-212ENST00000541770 NCAPD3P42695 1498 aa17.16■□□□□ 0.34
CLSTN3-212ENST00000541770 ATAD2BQ9ULI0 1458 aa17.1■□□□□ 0.33
CLSTN3-212ENST00000541770 NESP48681 1621 aa17.07■□□□□ 0.32
CLSTN3-212ENST00000541770 SMARCA4P51532 1647 aa17.06■□□□□ 0.32
CLSTN3-212ENST00000541770 SMARCA2P51531 1590 aa17.05■□□□□ 0.32
CLSTN3-212ENST00000541770 HMGXB3Q12766 1538 aa17.03■□□□□ 0.32
CLSTN3-212ENST00000541770 BAZ1BQ9UIG0 1483 aaKnown RBP16.96■□□□□ 0.31
CLSTN3-212ENST00000541770 THOC2Q8NI27 1593 aaKnown RBP16.94■□□□□ 0.3
CLSTN3-212ENST00000541770 BAZ1AQ9NRL2 1556 aaPredicted RBP16.91■□□□□ 0.3
CLSTN3-212ENST00000541770 KIF21AQ7Z4S6 1674 aa16.89■□□□□ 0.29
CLSTN3-212ENST00000541770 LAMC3Q9Y6N6 1575 aa16.87■□□□□ 0.29
CLSTN3-212ENST00000541770 PEG3Q9GZU2 1588 aa16.81■□□□□ 0.28
CLSTN3-212ENST00000541770 TRIM41Q8WV44 630 aa16.81■□□□□ 0.28
CLSTN3-212ENST00000541770 PDS5BQ9NTI5 1447 aa16.78■□□□□ 0.28
CLSTN3-212ENST00000541770 MROH2BQ7Z745 1585 aa16.77■□□□□ 0.28
CLSTN3-212ENST00000541770 MRC2Q9UBG0 1479 aa16.66■□□□□ 0.26
CLSTN3-212ENST00000541770 CADPSQ9ULU8 1353 aa16.64■□□□□ 0.26
CLSTN3-212ENST00000541770 WIZO95785 1651 aa16.62■□□□□ 0.25
CLSTN3-212ENST00000541770 WDR62O43379 1518 aa16.61■□□□□ 0.25
CLSTN3-212ENST00000541770 CEP164Q9UPV0 1460 aa16.55■□□□□ 0.24
CLSTN3-212ENST00000541770 FANCD2Q9BXW9 1451 aa16.49■□□□□ 0.23
CLSTN3-212ENST00000541770 OSCARQ8IYS5 282 aa16.45■□□□□ 0.22
CLSTN3-212ENST00000541770 CFTRP13569 1480 aa16.39■□□□□ 0.21
CLSTN3-212ENST00000541770 URB2Q14146 1524 aaKnown RBP16.37■□□□□ 0.21
CLSTN3-212ENST00000541770 PRDM2Q13029 1718 aa16.33■□□□□ 0.2
CLSTN3-212ENST00000541770 TOP2AP11388 1531 aaKnown RBP16.32■□□□□ 0.2
CLSTN3-212ENST00000541770 RIMBP3CA6NJZ7 1639 aa16.31■□□□□ 0.2
CLSTN3-212ENST00000541770 RIMBP3BA6NNM3 1639 aa16.31■□□□□ 0.2
CLSTN3-212ENST00000541770 RIMBP3Q9UFD9 1639 aa16.31■□□□□ 0.2
CLSTN3-212ENST00000541770 RSF1Q96T23 1441 aaPredicted RBP16.28■□□□□ 0.2
CLSTN3-212ENST00000541770 ZNF608Q9ULD9 1512 aaPredicted RBP16.23■□□□□ 0.19
CLSTN3-212ENST00000541770 IFT140Q96RY7 1462 aa16.2■□□□□ 0.18
CLSTN3-212ENST00000541770 ARHGEF11O15085 1522 aa16.19■□□□□ 0.18
CLSTN3-212ENST00000541770 EIF4G3O43432 1585 aaKnown RBP16.16■□□□□ 0.18
CLSTN3-212ENST00000541770 TOPBP1Q92547 1522 aa16.15■□□□□ 0.18
CLSTN3-212ENST00000541770 CCDC88BA6NC98 1476 aa16.14■□□□□ 0.17
CLSTN3-212ENST00000541770 CHD1O14646 1710 aa16.14■□□□□ 0.17
CLSTN3-212ENST00000541770 CYB5RLQ6IPT4 315 aa16.13■□□□□ 0.17
CLSTN3-212ENST00000541770 TRHP20396 242 aaPredicted RBP16.09■□□□□ 0.17
CLSTN3-212ENST00000541770 FBLN2P98095 1184 aa16.08■□□□□ 0.16
CLSTN3-212ENST00000541770 ABCC8Q09428 1581 aa16.08■□□□□ 0.16
CLSTN3-212ENST00000541770 DNMBPQ6XZF7 1577 aa16.08■□□□□ 0.16
CLSTN3-212ENST00000541770 AQRO60306 1485 aaKnown RBP eCLIP16.05■□□□□ 0.16
CLSTN3-212ENST00000541770 TARBP1Q13395 1621 aaKnown RBP16.02■□□□□ 0.16
CLSTN3-212ENST00000541770 ARAP1Q96P48 1450 aa16.01■□□□□ 0.15
CLSTN3-212ENST00000541770 POLA1P09884 1462 aaPredicted RBP15.96■□□□□ 0.14
CLSTN3-212ENST00000541770 RAD54L2Q9Y4B4 1467 aa15.94■□□□□ 0.14
CLSTN3-212ENST00000541770 TDRD9Q8NDG6 1382 aaKnown RBP15.91■□□□□ 0.14
CLSTN3-212ENST00000541770 SOGA1O94964 1423 aa15.9■□□□□ 0.14
CLSTN3-212ENST00000541770 SNAPC4Q5SXM2 1469 aa15.89■□□□□ 0.13
CLSTN3-212ENST00000541770 CHMP7Q8WUX9 453 aaPredicted RBP15.86■□□□□ 0.13
CLSTN3-212ENST00000541770 SYNJ1O43426 1573 aa15.85■□□□□ 0.13
CLSTN3-212ENST00000541770 FGD5Q6ZNL6 1462 aa15.84■□□□□ 0.13
CLSTN3-212ENST00000541770 CLASP1Q7Z460 1538 aa15.84■□□□□ 0.13
CLSTN3-212ENST00000541770 AEBP2Q6ZN18 517 aaPredicted RBP15.84■□□□□ 0.13
CLSTN3-212ENST00000541770 WDR97A6NE52 1622 aa15.81■□□□□ 0.12
CLSTN3-212ENST00000541770 MAGI1Q96QZ7 1491 aaPredicted RBP15.79■□□□□ 0.12
CLSTN3-212ENST00000541770 PBRM1Q86U86 1689 aa15.79■□□□□ 0.12
CLSTN3-212ENST00000541770 CUX1P39880 1505 aa15.78■□□□□ 0.12
CLSTN3-212ENST00000541770 GRIN2BQ13224 1484 aa15.78■□□□□ 0.12
CLSTN3-212ENST00000541770 SYNJ2O15056 1496 aa15.75■□□□□ 0.11
CLSTN3-212ENST00000541770 GAPVD1Q14C86 1478 aa15.71■□□□□ 0.11
CLSTN3-212ENST00000541770 ABCA5Q8WWZ7 1642 aa15.65■□□□□ 0.1
CLSTN3-212ENST00000541770 ERCC6L2Q5T890 1561 aa15.62■□□□□ 0.09
CLSTN3-212ENST00000541770 ABCA10Q8WWZ4 1543 aa15.6■□□□□ 0.09
CLSTN3-212ENST00000541770 GRIN2AQ12879 1464 aa15.58■□□□□ 0.08
CLSTN3-212ENST00000541770 CEP170Q5SW79 1584 aa15.56■□□□□ 0.08
CLSTN3-212ENST00000541770 ADAMTS12P58397 1594 aa15.55■□□□□ 0.08
CLSTN3-212ENST00000541770 KIF13AQ9H1H9 1805 aa15.52■□□□□ 0.07
CLSTN3-212ENST00000541770 NUP160Q12769 1436 aa15.5■□□□□ 0.07
CLSTN3-212ENST00000541770 WRNQ14191 1432 aaPredicted RBP eCLIP15.5■□□□□ 0.07
CLSTN3-212ENST00000541770 SHROOM2Q13796 1616 aa15.49■□□□□ 0.07
CLSTN3-212ENST00000541770 SUPT5HO00267 1087 aaKnown RBP15.48■□□□□ 0.07
CLSTN3-212ENST00000541770 BIVM-ERCC5R4GMW8 1640 aa15.47■□□□□ 0.07
CLSTN3-212ENST00000541770 FHAD1B1AJZ9 1412 aa15.46■□□□□ 0.07
CLSTN3-212ENST00000541770 TOP2BQ02880 1626 aa15.44■□□□□ 0.06
CLSTN3-212ENST00000541770 PRG4Q92954 1404 aaPredicted RBP15.43■□□□□ 0.06
CLSTN3-212ENST00000541770 ERICH3Q5RHP9 1530 aa15.42■□□□□ 0.06
CLSTN3-212ENST00000541770 NPM1P06748 294 aaKnown RBP eCLIP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms