RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 CCER1Q8TC90 406 aaPredicted RBP26.13■■□□□ 1.77
SPIDR-227ENST00000541342 AQRO60306 1485 aaKnown RBP eCLIP26.13■■□□□ 1.77
SPIDR-227ENST00000541342 IFT140Q96RY7 1462 aa26.1■■□□□ 1.77
SPIDR-227ENST00000541342 APLP2Q06481 763 aa26.08■■□□□ 1.77
SPIDR-227ENST00000541342 ZNF608Q9ULD9 1512 aaPredicted RBP26.07■■□□□ 1.76
SPIDR-227ENST00000541342 ADAMTS12P58397 1594 aa26.01■■□□□ 1.75
SPIDR-227ENST00000541342 GRIN2BQ13224 1484 aa26■■□□□ 1.75
SPIDR-227ENST00000541342 FHAD1B1AJZ9 1412 aa25.98■■□□□ 1.75
SPIDR-227ENST00000541342 EFCAB5A4FU69 1503 aa25.97■■□□□ 1.75
SPIDR-227ENST00000541342 EIF4G3O43432 1585 aaKnown RBP25.95■■□□□ 1.75
SPIDR-227ENST00000541342 KANK4Q5T7N3 995 aaPredicted RBP25.95■■□□□ 1.74
SPIDR-227ENST00000541342 P3H3Q8IVL6 736 aa25.94■■□□□ 1.74
SPIDR-227ENST00000541342 FHOD3Q2V2M9 1422 aa25.93■■□□□ 1.74
SPIDR-227ENST00000541342 SAMD9Q5K651 1589 aa25.89■■□□□ 1.73
SPIDR-227ENST00000541342 PCF11O94913 1555 aaKnown RBP25.88■■□□□ 1.73
SPIDR-227ENST00000541342 TIAM1Q13009 1591 aa25.85■■□□□ 1.73
SPIDR-227ENST00000541342 SNAPC4Q5SXM2 1469 aa25.85■■□□□ 1.73
SPIDR-227ENST00000541342 MAP3K1Q13233 1512 aa25.83■■□□□ 1.73
SPIDR-227ENST00000541342 DIEXFQ68CQ4 756 aaKnown RBP25.81■■□□□ 1.72
SPIDR-227ENST00000541342 ACIN1Q9UKV3 1341 aaKnown RBP25.8■■□□□ 1.72
SPIDR-227ENST00000541342 NEUROD1Q13562 356 aa25.8■■□□□ 1.72
SPIDR-227ENST00000541342 PELP1Q8IZL8 1130 aaKnown RBP25.79■■□□□ 1.72
SPIDR-227ENST00000541342 CFAP43Q8NDM7 1665 aa25.78■■□□□ 1.72
SPIDR-227ENST00000541342 IQGAP2Q13576 1575 aa25.78■■□□□ 1.72
SPIDR-227ENST00000541342 FYCO1Q9BQS8 1478 aa25.77■■□□□ 1.72
SPIDR-227ENST00000541342 CASKIN1Q8WXD9 1431 aa25.76■■□□□ 1.71
SPIDR-227ENST00000541342 FMN1Q68DA7 1419 aa25.74■■□□□ 1.71
SPIDR-227ENST00000541342 MAGI1Q96QZ7 1491 aaPredicted RBP25.72■■□□□ 1.71
SPIDR-227ENST00000541342 GRIN2AQ12879 1464 aa25.72■■□□□ 1.71
SPIDR-227ENST00000541342 LRRC9Q6ZRR7 1453 aa25.72■■□□□ 1.71
SPIDR-227ENST00000541342 HNRNPUL2Q1KMD3 747 aaKnown RBP25.7■■□□□ 1.71
SPIDR-227ENST00000541342 RRBP1Q9P2E9 1410 aaKnown RBP25.68■■□□□ 1.7
SPIDR-227ENST00000541342 ATP1B4Q9UN42 357 aaPredicted RBP25.68■■□□□ 1.7
SPIDR-227ENST00000541342 LRRIQ1Q96JM4 1722 aa25.67■■□□□ 1.7
SPIDR-227ENST00000541342 SYNJ2O15056 1496 aa25.65■■□□□ 1.7
SPIDR-227ENST00000541342 UGGT2Q9NYU1 1516 aa25.64■■□□□ 1.7
SPIDR-227ENST00000541342 KIAA0586Q9BVV6 1533 aa25.64■■□□□ 1.69
SPIDR-227ENST00000541342 CEP170Q5SW79 1584 aa25.6■■□□□ 1.69
SPIDR-227ENST00000541342 CHMP7Q8WUX9 453 aaPredicted RBP25.58■■□□□ 1.69
SPIDR-227ENST00000541342 CCNB3Q8WWL7 1395 aa25.57■■□□□ 1.68
SPIDR-227ENST00000541342 PHLDB1Q86UU1 1377 aa25.55■■□□□ 1.68
SPIDR-227ENST00000541342 DISP1Q96F81 1524 aa25.55■■□□□ 1.68
SPIDR-227ENST00000541342 ZNF316A6NFI3 1004 aaPredicted RBP25.54■■□□□ 1.68
SPIDR-227ENST00000541342 KIAA0556O60303 1618 aa25.53■■□□□ 1.68
SPIDR-227ENST00000541342 FBLN2P98095 1184 aa25.52■■□□□ 1.68
SPIDR-227ENST00000541342 GTF3C3Q9Y5Q9 886 aa25.51■■□□□ 1.67
SPIDR-227ENST00000541342 NUP160Q12769 1436 aa25.5■■□□□ 1.67
SPIDR-227ENST00000541342 CENPBP07199 599 aaPredicted RBP25.5■■□□□ 1.67
SPIDR-227ENST00000541342 HECW1Q76N89 1606 aa25.46■■□□□ 1.67
SPIDR-227ENST00000541342 CCDC18Q5T9S5 1454 aa25.42■■□□□ 1.66
SPIDR-227ENST00000541342 MTUS2Q5JR59 1369 aa25.41■■□□□ 1.66
SPIDR-227ENST00000541342 MAGI3Q5TCQ9 1506 aa25.41■■□□□ 1.66
SPIDR-227ENST00000541342 EPRSP07814 1512 aaKnown RBP25.39■■□□□ 1.66
SPIDR-227ENST00000541342 EHBP1L1Q8N3D4 1523 aa25.37■■□□□ 1.65
SPIDR-227ENST00000541342 CDK13Q14004 1512 aaKnown RBP25.36■■□□□ 1.65
SPIDR-227ENST00000541342 CHD1O14646 1710 aa25.36■■□□□ 1.65
SPIDR-227ENST00000541342 ITGAEP38570 1179 aa25.35■■□□□ 1.65
SPIDR-227ENST00000541342 SUPT6HQ7KZ85 1726 aaKnown RBP25.35■■□□□ 1.65
SPIDR-227ENST00000541342 JPH4Q96JJ6 628 aa25.34■■□□□ 1.65
SPIDR-227ENST00000541342 NCOA2Q15596 1464 aa25.33■■□□□ 1.65
SPIDR-227ENST00000541342 RAPGEF6Q8TEU7 1601 aa25.32■■□□□ 1.64
SPIDR-227ENST00000541342 FAM50AQ14320 339 aaKnown RBP25.3■■□□□ 1.64
SPIDR-227ENST00000541342 FGD6Q6ZV73 1430 aa25.3■■□□□ 1.64
SPIDR-227ENST00000541342 ARHGEF11O15085 1522 aa25.3■■□□□ 1.64
SPIDR-227ENST00000541342 NUP153P49790 1475 aaKnown RBP25.29■■□□□ 1.64
SPIDR-227ENST00000541342 ARID3CA6NKF2 412 aa25.28■■□□□ 1.64
SPIDR-227ENST00000541342 MIER1Q8N108 512 aa25.27■■□□□ 1.64
SPIDR-227ENST00000541342 CARMIL2Q6F5E8 1435 aa25.27■■□□□ 1.64
SPIDR-227ENST00000541342 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.26■■□□□ 1.63
SPIDR-227ENST00000541342 MYOM3Q5VTT5 1437 aa25.24■■□□□ 1.63
SPIDR-227ENST00000541342 PLB1Q6P1J6 1458 aa25.23■■□□□ 1.63
SPIDR-227ENST00000541342 DHX57Q6P158 1386 aaKnown RBP25.23■■□□□ 1.63
SPIDR-227ENST00000541342 YTHDC1Q96MU7 727 aaKnown RBP25.2■■□□□ 1.63
SPIDR-227ENST00000541342 RAB3GAP2Q9H2M9 1393 aa25.17■■□□□ 1.62
SPIDR-227ENST00000541342 PTPN23Q9H3S7 1636 aa25.15■■□□□ 1.62
SPIDR-227ENST00000541342 PRG4Q92954 1404 aaPredicted RBP25.15■■□□□ 1.62
SPIDR-227ENST00000541342 SETD5Q9C0A6 1442 aa25.14■■□□□ 1.62
SPIDR-227ENST00000541342 SHROOM2Q13796 1616 aa25.13■■□□□ 1.61
SPIDR-227ENST00000541342 ABCA8O94911 1581 aa25.13■■□□□ 1.61
SPIDR-227ENST00000541342 PTPRKQ15262 1439 aa25.1■■□□□ 1.61
SPIDR-227ENST00000541342 TCOF1Q13428 1488 aaKnown RBP25.08■■□□□ 1.61
SPIDR-227ENST00000541342 CLSPNQ9HAW4 1339 aa25.07■■□□□ 1.6
SPIDR-227ENST00000541342 CDK11AQ9UQ88 783 aaPredicted RBP25.03■■□□□ 1.6
SPIDR-227ENST00000541342 TROQ12816 1431 aaPredicted RBP25.03■■□□□ 1.6
SPIDR-227ENST00000541342 MIA2Q96PC5 1412 aa25.03■■□□□ 1.6
SPIDR-227ENST00000541342 ERCC6L2Q5T890 1561 aa25.02■■□□□ 1.6
SPIDR-227ENST00000541342 PTPRGP23470 1445 aa25.01■■□□□ 1.59
SPIDR-227ENST00000541342 CLASP1Q7Z460 1538 aa25.01■■□□□ 1.59
SPIDR-227ENST00000541342 ADCY10Q96PN6 1610 aa25■■□□□ 1.59
SPIDR-227ENST00000541342 ATP10BO94823 1461 aa24.99■■□□□ 1.59
SPIDR-227ENST00000541342 KIF14Q15058 1648 aa24.99■■□□□ 1.59
SPIDR-227ENST00000541342 MAPKBP1O60336 1514 aa24.98■■□□□ 1.59
SPIDR-227ENST00000541342 HFM1A2PYH4 1435 aa24.96■■□□□ 1.59
SPIDR-227ENST00000541342 NAIPQ13075 1403 aa24.92■■□□□ 1.58
SPIDR-227ENST00000541342 ITSN2Q9NZM3 1697 aa24.89■■□□□ 1.57
SPIDR-227ENST00000541342 UACAQ9BZF9 1416 aa24.88■■□□□ 1.57
SPIDR-227ENST00000541342 GPATCH8Q9UKJ3 1502 aaKnown RBP24.88■■□□□ 1.57
SPIDR-227ENST00000541342 ZNF644Q9H582 1327 aaPredicted RBP24.87■■□□□ 1.57
SPIDR-227ENST00000541342 GCC2Q8IWJ2 1684 aa24.85■■□□□ 1.57
SPIDR-227ENST00000541342 PLEKHD1A6NEE1 506 aa24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms