RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 NISCHQ9Y2I1 1504 aa37.65■■■■□ 3.62
SPIDR-227ENST00000541342 CCDC180Q9P1Z9 1646 aa32.61■■■□□ 2.81
SPIDR-227ENST00000541342 ZCCHC6Q5VYS8 1495 aaKnown RBP31.7■■■□□ 2.66
SPIDR-227ENST00000541342 SHROOM4Q9ULL8 1493 aa31.09■■■□□ 2.57
SPIDR-227ENST00000541342 DCAF8L2P0C7V8 631 aa31.05■■■□□ 2.56
SPIDR-227ENST00000541342 DCAF1Q9Y4B6 1507 aa31.04■■■□□ 2.56
SPIDR-227ENST00000541342 ABCC9O60706 1549 aa30.66■■■□□ 2.5
SPIDR-227ENST00000541342 MYO15BQ96JP2 1530 aa30.52■■■□□ 2.48
SPIDR-227ENST00000541342 NACADO15069 1562 aa30.28■■■□□ 2.44
SPIDR-227ENST00000541342 SCRIBQ14160 1630 aa30.17■■■□□ 2.42
SPIDR-227ENST00000541342 SUPT5HO00267 1087 aaKnown RBP30.03■■■□□ 2.4
SPIDR-227ENST00000541342 RB1CC1Q8TDY2 1594 aa29.96■■■□□ 2.39
SPIDR-227ENST00000541342 UNC13AQ9UPW8 1703 aa29.53■■■□□ 2.32
SPIDR-227ENST00000541342 RSF1Q96T23 1441 aaPredicted RBP29.37■■■□□ 2.29
SPIDR-227ENST00000541342 CECR2Q9BXF3 1484 aa29.31■■■□□ 2.28
SPIDR-227ENST00000541342 MROH2BQ7Z745 1585 aa29.16■■■□□ 2.26
SPIDR-227ENST00000541342 BICRAQ9NZM4 1560 aa29.16■■■□□ 2.26
SPIDR-227ENST00000541342 PABPN1Q86U42 306 aaKnown RBP eCLIP29.02■■■□□ 2.24
SPIDR-227ENST00000541342 BAZ1AQ9NRL2 1556 aaPredicted RBP29■■■□□ 2.23
SPIDR-227ENST00000541342 WIZO95785 1651 aa28.97■■■□□ 2.23
SPIDR-227ENST00000541342 CHIC1Q5VXU3 224 aa28.9■■■□□ 2.22
SPIDR-227ENST00000541342 SMARCA4P51532 1647 aa28.89■■■□□ 2.21
SPIDR-227ENST00000541342 TOP2AP11388 1531 aaKnown RBP28.58■■■□□ 2.17
SPIDR-227ENST00000541342 PEG3Q9GZU2 1588 aa28.47■■■□□ 2.15
SPIDR-227ENST00000541342 SMARCA2P51531 1590 aa28.37■■■□□ 2.13
SPIDR-227ENST00000541342 CCDC88BA6NC98 1476 aa28.34■■■□□ 2.13
SPIDR-227ENST00000541342 ATAD2BQ9ULI0 1458 aa28.31■■■□□ 2.12
SPIDR-227ENST00000541342 EIF4G1Q04637 1599 aaKnown RBP28.3■■■□□ 2.12
SPIDR-227ENST00000541342 HRCP23327 699 aa28.22■■■□□ 2.11
SPIDR-227ENST00000541342 BAZ1BQ9UIG0 1483 aaKnown RBP28.16■■■□□ 2.1
SPIDR-227ENST00000541342 TRIM41Q8WV44 630 aa28.13■■■□□ 2.09
SPIDR-227ENST00000541342 PCGF6Q9BYE7 350 aa27.99■■■□□ 2.07
SPIDR-227ENST00000541342 NCAPD3P42695 1498 aa27.97■■■□□ 2.07
SPIDR-227ENST00000541342 HMGXB3Q12766 1538 aa27.96■■■□□ 2.07
SPIDR-227ENST00000541342 ABCC8Q09428 1581 aa27.93■■■□□ 2.06
SPIDR-227ENST00000541342 LOC105371045A0A1W2PR82 267 aa27.89■■■□□ 2.06
SPIDR-227ENST00000541342 CC2D2AQ9P2K1 1620 aa27.74■■■□□ 2.03
SPIDR-227ENST00000541342 FAM9AQ8IZU1 332 aaPredicted RBP27.73■■■□□ 2.03
SPIDR-227ENST00000541342 PPARGC1BQ86YN6 1023 aaKnown RBP27.64■■■□□ 2.02
SPIDR-227ENST00000541342 WRNQ14191 1432 aaPredicted RBP eCLIP27.6■■■□□ 2.01
SPIDR-227ENST00000541342 SYNJ1O43426 1573 aa27.55■■■□□ 2
SPIDR-227ENST00000541342 CFTRP13569 1480 aa27.47■■□□□ 1.99
SPIDR-227ENST00000541342 SOGA1O94964 1423 aa27.45■■□□□ 1.99
SPIDR-227ENST00000541342 EHMT2Q96KQ7 1210 aa27.41■■□□□ 1.98
SPIDR-227ENST00000541342 TRIM26Q12899 539 aaPredicted RBP27.37■■□□□ 1.97
SPIDR-227ENST00000541342 PRDM2Q13029 1718 aa27.37■■□□□ 1.97
SPIDR-227ENST00000541342 RUSC2Q8N2Y8 1516 aa27.37■■□□□ 1.97
SPIDR-227ENST00000541342 TOP2BQ02880 1626 aa27.35■■□□□ 1.97
SPIDR-227ENST00000541342 BIVM-ERCC5R4GMW8 1640 aa27.31■■□□□ 1.96
SPIDR-227ENST00000541342 CADPSQ9ULU8 1353 aa27.29■■□□□ 1.96
SPIDR-227ENST00000541342 EEA1Q15075 1411 aa27.28■■□□□ 1.96
SPIDR-227ENST00000541342 CUX1P39880 1505 aa27.23■■□□□ 1.95
SPIDR-227ENST00000541342 CSRNP3Q8WYN3 585 aa27.19■■□□□ 1.94
SPIDR-227ENST00000541342 DNAJC5BQ9UF47 199 aa27.09■■□□□ 1.93
SPIDR-227ENST00000541342 NESP48681 1621 aa27.07■■□□□ 1.92
SPIDR-227ENST00000541342 FANCD2Q9BXW9 1451 aa27.02■■□□□ 1.92
SPIDR-227ENST00000541342 KIF21BO75037 1637 aa27■■□□□ 1.91
SPIDR-227ENST00000541342 GOLGA3Q08378 1498 aa27■■□□□ 1.91
SPIDR-227ENST00000541342 TNIKQ9UKE5 1360 aa26.98■■□□□ 1.91
SPIDR-227ENST00000541342 LAMC3Q9Y6N6 1575 aa26.96■■□□□ 1.91
SPIDR-227ENST00000541342 CEP164Q9UPV0 1460 aa26.95■■□□□ 1.91
SPIDR-227ENST00000541342 CEP162Q5TB80 1403 aa26.91■■□□□ 1.9
SPIDR-227ENST00000541342 UBTFP17480 764 aaKnown RBP26.89■■□□□ 1.9
SPIDR-227ENST00000541342 FGD5Q6ZNL6 1462 aa26.86■■□□□ 1.89
SPIDR-227ENST00000541342 RAPGEF2Q9Y4G8 1499 aa26.86■■□□□ 1.89
SPIDR-227ENST00000541342 KIF27Q86VH2 1401 aa26.83■■□□□ 1.89
SPIDR-227ENST00000541342 DNMBPQ6XZF7 1577 aa26.82■■□□□ 1.88
SPIDR-227ENST00000541342 ZEB1P37275 1124 aaPredicted RBP26.8■■□□□ 1.88
SPIDR-227ENST00000541342 PRXQ9BXM0 1461 aa26.78■■□□□ 1.88
SPIDR-227ENST00000541342 TOPBP1Q92547 1522 aa26.78■■□□□ 1.88
SPIDR-227ENST00000541342 CUX2O14529 1486 aa26.74■■□□□ 1.87
SPIDR-227ENST00000541342 ERICH3Q5RHP9 1530 aa26.73■■□□□ 1.87
SPIDR-227ENST00000541342 KIF21AQ7Z4S6 1674 aa26.73■■□□□ 1.87
SPIDR-227ENST00000541342 PDS5BQ9NTI5 1447 aa26.72■■□□□ 1.87
SPIDR-227ENST00000541342 URB2Q14146 1524 aaKnown RBP26.71■■□□□ 1.87
SPIDR-227ENST00000541342 POLA1P09884 1462 aaPredicted RBP26.69■■□□□ 1.86
SPIDR-227ENST00000541342 RAD54L2Q9Y4B4 1467 aa26.65■■□□□ 1.86
SPIDR-227ENST00000541342 IGF1RP08069 1367 aa26.62■■□□□ 1.85
SPIDR-227ENST00000541342 CLIP1P30622 1438 aa26.6■■□□□ 1.85
SPIDR-227ENST00000541342 ABCA10Q8WWZ4 1543 aa26.59■■□□□ 1.85
SPIDR-227ENST00000541342 WDR97A6NE52 1622 aa26.53■■□□□ 1.84
SPIDR-227ENST00000541342 RANGAP1P46060 587 aaPredicted RBP26.47■■□□□ 1.83
SPIDR-227ENST00000541342 CARMIL1Q5VZK9 1371 aa26.46■■□□□ 1.83
SPIDR-227ENST00000541342 VPS8Q8N3P4 1428 aa26.4■■□□□ 1.82
SPIDR-227ENST00000541342 MRC2Q9UBG0 1479 aa26.39■■□□□ 1.82
SPIDR-227ENST00000541342 ABCA5Q8WWZ7 1642 aa26.38■■□□□ 1.81
SPIDR-227ENST00000541342 TARBP1Q13395 1621 aaKnown RBP26.37■■□□□ 1.81
SPIDR-227ENST00000541342 ARAP1Q96P48 1450 aa26.35■■□□□ 1.81
SPIDR-227ENST00000541342 TDRD9Q8NDG6 1382 aaKnown RBP26.34■■□□□ 1.81
SPIDR-227ENST00000541342 CUL7Q14999 1698 aa26.33■■□□□ 1.81
SPIDR-227ENST00000541342 TTBK1Q5TCY1 1321 aaPredicted RBP26.3■■□□□ 1.8
SPIDR-227ENST00000541342 GAPVD1Q14C86 1478 aa26.29■■□□□ 1.8
SPIDR-227ENST00000541342 ARHGAP35Q9NRY4 1499 aa26.27■■□□□ 1.8
SPIDR-227ENST00000541342 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.26■■□□□ 1.79
SPIDR-227ENST00000541342 WDR62O43379 1518 aa26.26■■□□□ 1.79
SPIDR-227ENST00000541342 SCAF1Q9H7N4 1312 aaKnown RBP26.22■■□□□ 1.79
SPIDR-227ENST00000541342 ERCC6Q03468 1493 aa26.18■■□□□ 1.78
SPIDR-227ENST00000541342 PBRM1Q86U86 1689 aa26.16■■□□□ 1.78
SPIDR-227ENST00000541342 THOC2Q8NI27 1593 aaKnown RBP26.15■■□□□ 1.78
SPIDR-227ENST00000541342 CTTNBP2Q8WZ74 1663 aa26.15■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms