RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 MAPKBP1O60336 1514 aa22.59■■□□□ 1.21
CLSTN3-208ENST00000538933 DIP2BQ9P265 1576 aa22.59■■□□□ 1.21
CLSTN3-208ENST00000538933 ERICH3Q5RHP9 1530 aa22.57■■□□□ 1.2
CLSTN3-208ENST00000538933 BIVM-ERCC5R4GMW8 1640 aa22.54■■□□□ 1.2
CLSTN3-208ENST00000538933 KDM6BO15054 1643 aa22.53■■□□□ 1.2
CLSTN3-208ENST00000538933 TOP2BQ02880 1626 aa22.53■■□□□ 1.2
CLSTN3-208ENST00000538933 ADCY10Q96PN6 1610 aa22.52■■□□□ 1.2
CLSTN3-208ENST00000538933 NPM1P06748 294 aaKnown RBP eCLIP22.49■■□□□ 1.19
CLSTN3-208ENST00000538933 TSPOAP1O95153 1857 aa22.47■■□□□ 1.19
CLSTN3-208ENST00000538933 RUSC2Q8N2Y8 1516 aa22.47■■□□□ 1.19
CLSTN3-208ENST00000538933 PPRC1Q5VV67 1664 aaKnown RBP22.3■■□□□ 1.16
CLSTN3-208ENST00000538933 KIAA0586Q9BVV6 1533 aa22.29■■□□□ 1.16
CLSTN3-208ENST00000538933 ADGRL1O94910 1474 aa22.28■■□□□ 1.16
CLSTN3-208ENST00000538933 GLI2P10070 1586 aa22.22■■□□□ 1.15
CLSTN3-208ENST00000538933 COL17A1Q9UMD9 1497 aaPredicted RBP22.2■■□□□ 1.14
CLSTN3-208ENST00000538933 HECW2Q9P2P5 1572 aa22.2■■□□□ 1.14
CLSTN3-208ENST00000538933 PTPRGP23470 1445 aa22.19■■□□□ 1.14
CLSTN3-208ENST00000538933 ABCC2Q92887 1545 aa22.18■■□□□ 1.14
CLSTN3-208ENST00000538933 IGF1RP08069 1367 aa22.18■■□□□ 1.14
CLSTN3-208ENST00000538933 ASXL2Q76L83 1435 aa22.16■■□□□ 1.14
CLSTN3-208ENST00000538933 SUPT5HO00267 1087 aaKnown RBP22.16■■□□□ 1.14
CLSTN3-208ENST00000538933 PLB1Q6P1J6 1458 aa22.15■■□□□ 1.14
CLSTN3-208ENST00000538933 CUL7Q14999 1698 aa22.11■■□□□ 1.13
CLSTN3-208ENST00000538933 TNIKQ9UKE5 1360 aa22.09■■□□□ 1.13
CLSTN3-208ENST00000538933 UHRF1BP1LA0JNW5 1464 aa22.09■■□□□ 1.13
CLSTN3-208ENST00000538933 MAP3K4Q9Y6R4 1608 aa22.08■■□□□ 1.13
CLSTN3-208ENST00000538933 TTBK1Q5TCY1 1321 aaPredicted RBP22.06■■□□□ 1.12
CLSTN3-208ENST00000538933 EPRSP07814 1512 aaKnown RBP22.05■■□□□ 1.12
CLSTN3-208ENST00000538933 CARMIL2Q6F5E8 1435 aa22.03■■□□□ 1.12
CLSTN3-208ENST00000538933 KIF27Q86VH2 1401 aa22.01■■□□□ 1.11
CLSTN3-208ENST00000538933 UACAQ9BZF9 1416 aa22■■□□□ 1.11
CLSTN3-208ENST00000538933 KDM5BQ9UGL1 1544 aa22■■□□□ 1.11
CLSTN3-208ENST00000538933 TEX14Q8IWB6 1497 aa21.98■■□□□ 1.11
CLSTN3-208ENST00000538933 DISP1Q96F81 1524 aa21.96■■□□□ 1.11
CLSTN3-208ENST00000538933 CARMIL1Q5VZK9 1371 aa21.96■■□□□ 1.11
CLSTN3-208ENST00000538933 IQGAP2Q13576 1575 aa21.95■■□□□ 1.11
CLSTN3-208ENST00000538933 ZCCHC11Q5TAX3 1644 aaKnown RBP21.94■■□□□ 1.1
CLSTN3-208ENST00000538933 FBXO41Q8TF61 875 aa21.92■■□□□ 1.1
CLSTN3-208ENST00000538933 UGGT2Q9NYU1 1516 aa21.83■■□□□ 1.09
CLSTN3-208ENST00000538933 WDR7Q9Y4E6 1490 aa21.83■■□□□ 1.08
CLSTN3-208ENST00000538933 MAGI3Q5TCQ9 1506 aa21.81■■□□□ 1.08
CLSTN3-208ENST00000538933 CFAP43Q8NDM7 1665 aa21.79■■□□□ 1.08
CLSTN3-208ENST00000538933 KIF21BO75037 1637 aa21.78■■□□□ 1.08
CLSTN3-208ENST00000538933 KIAA0556O60303 1618 aa21.77■■□□□ 1.08
CLSTN3-208ENST00000538933 CD109Q6YHK3 1445 aa21.77■■□□□ 1.08
CLSTN3-208ENST00000538933 ADAMTSL3P82987 1691 aa21.69■■□□□ 1.06
CLSTN3-208ENST00000538933 KCNH8Q96L42 1107 aa21.69■■□□□ 1.06
CLSTN3-208ENST00000538933 ARAP3Q8WWN8 1544 aa21.68■■□□□ 1.06
CLSTN3-208ENST00000538933 PTPRMP28827 1452 aa21.67■■□□□ 1.06
CLSTN3-208ENST00000538933 RAPGEF2Q9Y4G8 1499 aa21.67■■□□□ 1.06
CLSTN3-208ENST00000538933 ABCA8O94911 1581 aa21.65■■□□□ 1.06
CLSTN3-208ENST00000538933 PCF11O94913 1555 aaKnown RBP21.57■■□□□ 1.04
CLSTN3-208ENST00000538933 LMTK3Q96Q04 1460 aa21.56■■□□□ 1.04
CLSTN3-208ENST00000538933 CTTNBP2Q8WZ74 1663 aa21.56■■□□□ 1.04
CLSTN3-208ENST00000538933 BCORL1Q5H9F3 1711 aa21.55■■□□□ 1.04
CLSTN3-208ENST00000538933 GOLGA3Q08378 1498 aa21.52■■□□□ 1.04
CLSTN3-208ENST00000538933 PHLDB1Q86UU1 1377 aa21.52■■□□□ 1.04
CLSTN3-208ENST00000538933 MADDQ8WXG6 1647 aa21.52■■□□□ 1.04
CLSTN3-208ENST00000538933 ABCA9Q8IUA7 1624 aa21.51■■□□□ 1.03
CLSTN3-208ENST00000538933 RAPGEF3O95398 923 aa21.5■■□□□ 1.03
CLSTN3-208ENST00000538933 ATP10BO94823 1461 aa21.48■■□□□ 1.03
CLSTN3-208ENST00000538933 FRMPD1Q5SYB0 1578 aa21.47■■□□□ 1.03
CLSTN3-208ENST00000538933 NEO1Q92859 1461 aa21.44■■□□□ 1.02
CLSTN3-208ENST00000538933 RIMS1Q86UR5 1692 aaKnown RBP21.41■■□□□ 1.02
CLSTN3-208ENST00000538933 ARID3CA6NKF2 412 aa21.4■■□□□ 1.02
CLSTN3-208ENST00000538933 HSPA2P54652 639 aa21.4■■□□□ 1.02
CLSTN3-208ENST00000538933 CERKQ8TCT0 537 aa21.39■■□□□ 1.01
CLSTN3-208ENST00000538933 ARID4BQ4LE39 1312 aaPredicted RBP21.38■■□□□ 1.01
CLSTN3-208ENST00000538933 ILDR2Q71H61 639 aa21.36■■□□□ 1.01
CLSTN3-208ENST00000538933 ARHGEF40Q8TER5 1519 aa21.34■■□□□ 1.01
CLSTN3-208ENST00000538933 RICTORQ6R327 1708 aa21.33■■□□□ 1.01
CLSTN3-208ENST00000538933 PRXQ9BXM0 1461 aa21.32■■□□□ 1
CLSTN3-208ENST00000538933 SIGLEC1Q9BZZ2 1709 aa21.32■■□□□ 1
CLSTN3-208ENST00000538933 SOCS7O14512 581 aa21.3■■□□□ 1
CLSTN3-208ENST00000538933 P3H3Q8IVL6 736 aa21.3■■□□□ 1
CLSTN3-208ENST00000538933 FHOD3Q2V2M9 1422 aa21.27■■□□□ 1
CLSTN3-208ENST00000538933 DENND4BO75064 1496 aaPredicted RBP21.26■□□□□ 0.99
CLSTN3-208ENST00000538933 RAPGEF6Q8TEU7 1601 aa21.26■□□□□ 0.99
CLSTN3-208ENST00000538933 DISP3Q9P2K9 1392 aa21.23■□□□□ 0.99
CLSTN3-208ENST00000538933 SAMD9Q5K651 1589 aa21.23■□□□□ 0.99
CLSTN3-208ENST00000538933 FAM9AQ8IZU1 332 aaPredicted RBP21.23■□□□□ 0.99
CLSTN3-208ENST00000538933 AKNAQ7Z591 1439 aa21.22■□□□□ 0.99
CLSTN3-208ENST00000538933 PLPPR3Q6T4P5 718 aa21.22■□□□□ 0.99
CLSTN3-208ENST00000538933 ZMYM4Q5VZL5 1548 aa21.22■□□□□ 0.99
CLSTN3-208ENST00000538933 FANCAO15360 1455 aa21.21■□□□□ 0.99
CLSTN3-208ENST00000538933 POGZQ7Z3K3 1410 aa21.21■□□□□ 0.99
CLSTN3-208ENST00000538933 NUP153P49790 1475 aaKnown RBP21.2■□□□□ 0.98
CLSTN3-208ENST00000538933 YEATS2Q9ULM3 1422 aa21.2■□□□□ 0.98
CLSTN3-208ENST00000538933 TTC37Q6PGP7 1564 aa21.19■□□□□ 0.98
CLSTN3-208ENST00000538933 FER1L4A9Z1Z3 1794 aa21.19■□□□□ 0.98
CLSTN3-208ENST00000538933 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.17■□□□□ 0.98
CLSTN3-208ENST00000538933 HNRNPUL2Q1KMD3 747 aaKnown RBP21.17■□□□□ 0.98
CLSTN3-208ENST00000538933 STRCQ7RTU9 1775 aa21.17■□□□□ 0.98
CLSTN3-208ENST00000538933 ZFYVE16Q7Z3T8 1539 aa21.16■□□□□ 0.98
CLSTN3-208ENST00000538933 CFAP74Q9C0B2 1584 aa21.14■□□□□ 0.98
CLSTN3-208ENST00000538933 EFCAB5A4FU69 1503 aa21.14■□□□□ 0.98
CLSTN3-208ENST00000538933 MAGI2Q86UL8 1455 aa21.14■□□□□ 0.98
CLSTN3-208ENST00000538933 PREX1Q8TCU6 1659 aa21.14■□□□□ 0.97
CLSTN3-208ENST00000538933 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.14■□□□□ 0.97
CLSTN3-208ENST00000538933 HECW1Q76N89 1606 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms