RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 NISCHQ9Y2I1 1504 aa31.85■■■□□ 2.69
CLSTN3-208ENST00000538933 ABCC9O60706 1549 aa29.45■■■□□ 2.31
CLSTN3-208ENST00000538933 CCDC180Q9P1Z9 1646 aa28.85■■■□□ 2.21
CLSTN3-208ENST00000538933 DNAJC5BQ9UF47 199 aa28.34■■■□□ 2.13
CLSTN3-208ENST00000538933 RB1CC1Q8TDY2 1594 aa27.74■■■□□ 2.03
CLSTN3-208ENST00000538933 NACADO15069 1562 aa27.42■■□□□ 1.98
CLSTN3-208ENST00000538933 PABPN1Q86U42 306 aaKnown RBP eCLIP27.33■■□□□ 1.97
CLSTN3-208ENST00000538933 UNC13AQ9UPW8 1703 aa27.23■■□□□ 1.95
CLSTN3-208ENST00000538933 BICRAQ9NZM4 1560 aa27.06■■□□□ 1.92
CLSTN3-208ENST00000538933 DCAF8L2P0C7V8 631 aa27.06■■□□□ 1.92
CLSTN3-208ENST00000538933 MYO15BQ96JP2 1530 aa26.85■■□□□ 1.89
CLSTN3-208ENST00000538933 CC2D2AQ9P2K1 1620 aa26.61■■□□□ 1.85
CLSTN3-208ENST00000538933 CECR2Q9BXF3 1484 aa26.6■■□□□ 1.85
CLSTN3-208ENST00000538933 SHROOM4Q9ULL8 1493 aa26.53■■□□□ 1.84
CLSTN3-208ENST00000538933 DNAJC5Q9H3Z4 198 aa26.45■■□□□ 1.82
CLSTN3-208ENST00000538933 EIF4G1Q04637 1599 aaKnown RBP26.38■■□□□ 1.81
CLSTN3-208ENST00000538933 DCAF1Q9Y4B6 1507 aa26.28■■□□□ 1.8
CLSTN3-208ENST00000538933 ZCCHC6Q5VYS8 1495 aaKnown RBP26.23■■□□□ 1.79
CLSTN3-208ENST00000538933 SCRIBQ14160 1630 aa26.21■■□□□ 1.79
CLSTN3-208ENST00000538933 CUX2O14529 1486 aa25.65■■□□□ 1.7
CLSTN3-208ENST00000538933 ERCC6Q03468 1493 aa25.4■■□□□ 1.66
CLSTN3-208ENST00000538933 NCAPD3P42695 1498 aa25.35■■□□□ 1.65
CLSTN3-208ENST00000538933 ATAD2BQ9ULI0 1458 aa25.17■■□□□ 1.62
CLSTN3-208ENST00000538933 NESP48681 1621 aa25.16■■□□□ 1.62
CLSTN3-208ENST00000538933 HMGXB3Q12766 1538 aa25.07■■□□□ 1.6
CLSTN3-208ENST00000538933 THOC2Q8NI27 1593 aaKnown RBP25.03■■□□□ 1.6
CLSTN3-208ENST00000538933 SMARCA2P51531 1590 aa25.02■■□□□ 1.6
CLSTN3-208ENST00000538933 SMARCA4P51532 1647 aa24.97■■□□□ 1.59
CLSTN3-208ENST00000538933 TRIM41Q8WV44 630 aa24.9■■□□□ 1.58
CLSTN3-208ENST00000538933 LAMC3Q9Y6N6 1575 aa24.84■■□□□ 1.57
CLSTN3-208ENST00000538933 BAZ1BQ9UIG0 1483 aaKnown RBP24.83■■□□□ 1.57
CLSTN3-208ENST00000538933 KIF21AQ7Z4S6 1674 aa24.81■■□□□ 1.56
CLSTN3-208ENST00000538933 PEG3Q9GZU2 1588 aa24.77■■□□□ 1.56
CLSTN3-208ENST00000538933 BAZ1AQ9NRL2 1556 aaPredicted RBP24.72■■□□□ 1.55
CLSTN3-208ENST00000538933 PDS5BQ9NTI5 1447 aa24.69■■□□□ 1.54
CLSTN3-208ENST00000538933 MROH2BQ7Z745 1585 aa24.54■■□□□ 1.52
CLSTN3-208ENST00000538933 MRC2Q9UBG0 1479 aa24.53■■□□□ 1.52
CLSTN3-208ENST00000538933 WDR62O43379 1518 aa24.52■■□□□ 1.52
CLSTN3-208ENST00000538933 CADPSQ9ULU8 1353 aa24.52■■□□□ 1.52
CLSTN3-208ENST00000538933 OSCARQ8IYS5 282 aa24.37■■□□□ 1.49
CLSTN3-208ENST00000538933 CEP164Q9UPV0 1460 aa24.28■■□□□ 1.48
CLSTN3-208ENST00000538933 FANCD2Q9BXW9 1451 aa24.22■■□□□ 1.47
CLSTN3-208ENST00000538933 WIZO95785 1651 aa24.21■■□□□ 1.47
CLSTN3-208ENST00000538933 RIMBP3CA6NJZ7 1639 aa24.16■■□□□ 1.46
CLSTN3-208ENST00000538933 RIMBP3BA6NNM3 1639 aa24.16■■□□□ 1.46
CLSTN3-208ENST00000538933 RIMBP3Q9UFD9 1639 aa24.16■■□□□ 1.46
CLSTN3-208ENST00000538933 CFTRP13569 1480 aa24.13■■□□□ 1.45
CLSTN3-208ENST00000538933 URB2Q14146 1524 aaKnown RBP24.11■■□□□ 1.45
CLSTN3-208ENST00000538933 ARHGEF11O15085 1522 aa24■■□□□ 1.43
CLSTN3-208ENST00000538933 ZNF608Q9ULD9 1512 aaPredicted RBP23.91■■□□□ 1.42
CLSTN3-208ENST00000538933 IFT140Q96RY7 1462 aa23.84■■□□□ 1.41
CLSTN3-208ENST00000538933 CYB5RLQ6IPT4 315 aa23.84■■□□□ 1.41
CLSTN3-208ENST00000538933 PRDM2Q13029 1718 aa23.83■■□□□ 1.41
CLSTN3-208ENST00000538933 TOP2AP11388 1531 aaKnown RBP23.82■■□□□ 1.4
CLSTN3-208ENST00000538933 RSF1Q96T23 1441 aaPredicted RBP23.79■■□□□ 1.4
CLSTN3-208ENST00000538933 ARAP1Q96P48 1450 aa23.73■■□□□ 1.39
CLSTN3-208ENST00000538933 TRHP20396 242 aaPredicted RBP23.72■■□□□ 1.39
CLSTN3-208ENST00000538933 TOPBP1Q92547 1522 aa23.72■■□□□ 1.39
CLSTN3-208ENST00000538933 EIF4G3O43432 1585 aaKnown RBP23.72■■□□□ 1.39
CLSTN3-208ENST00000538933 CHD1O14646 1710 aa23.7■■□□□ 1.38
CLSTN3-208ENST00000538933 AQRO60306 1485 aaKnown RBP eCLIP23.61■■□□□ 1.376e-9■■■■■ 30.6
CLSTN3-208ENST00000538933 TARBP1Q13395 1621 aaKnown RBP23.6■■□□□ 1.37
CLSTN3-208ENST00000538933 CCDC88BA6NC98 1476 aa23.6■■□□□ 1.37
CLSTN3-208ENST00000538933 ABCC8Q09428 1581 aa23.59■■□□□ 1.37
CLSTN3-208ENST00000538933 DNMBPQ6XZF7 1577 aa23.55■■□□□ 1.36
CLSTN3-208ENST00000538933 FBLN2P98095 1184 aa23.49■■□□□ 1.35
CLSTN3-208ENST00000538933 AEBP2Q6ZN18 517 aaPredicted RBP23.48■■□□□ 1.35
CLSTN3-208ENST00000538933 POLA1P09884 1462 aaPredicted RBP23.43■■□□□ 1.34
CLSTN3-208ENST00000538933 CLASP1Q7Z460 1538 aa23.42■■□□□ 1.34
CLSTN3-208ENST00000538933 RAD54L2Q9Y4B4 1467 aa23.36■■□□□ 1.33
CLSTN3-208ENST00000538933 TDRD9Q8NDG6 1382 aaKnown RBP23.35■■□□□ 1.33
CLSTN3-208ENST00000538933 SNAPC4Q5SXM2 1469 aa23.3■■□□□ 1.32
CLSTN3-208ENST00000538933 SOGA1O94964 1423 aa23.3■■□□□ 1.32
CLSTN3-208ENST00000538933 SYNJ1O43426 1573 aa23.27■■□□□ 1.32
CLSTN3-208ENST00000538933 WDR97A6NE52 1622 aa23.25■■□□□ 1.31
CLSTN3-208ENST00000538933 CHMP7Q8WUX9 453 aaPredicted RBP23.24■■□□□ 1.31
CLSTN3-208ENST00000538933 MAGI1Q96QZ7 1491 aaPredicted RBP23.22■■□□□ 1.31
CLSTN3-208ENST00000538933 GAPVD1Q14C86 1478 aa23.17■■□□□ 1.3
CLSTN3-208ENST00000538933 FGD5Q6ZNL6 1462 aa23.17■■□□□ 1.3
CLSTN3-208ENST00000538933 SYNJ2O15056 1496 aa23.16■■□□□ 1.3
CLSTN3-208ENST00000538933 GRIN2BQ13224 1484 aa23.16■■□□□ 1.3
CLSTN3-208ENST00000538933 CUX1P39880 1505 aa23.08■■□□□ 1.29
CLSTN3-208ENST00000538933 PBRM1Q86U86 1689 aa23.05■■□□□ 1.28
CLSTN3-208ENST00000538933 ERCC6L2Q5T890 1561 aa23.02■■□□□ 1.28
CLSTN3-208ENST00000538933 KIF13AQ9H1H9 1805 aa22.93■■□□□ 1.26
CLSTN3-208ENST00000538933 ABCA5Q8WWZ7 1642 aa22.93■■□□□ 1.26
CLSTN3-208ENST00000538933 ABCA10Q8WWZ4 1543 aa22.89■■□□□ 1.26
CLSTN3-208ENST00000538933 CEP170Q5SW79 1584 aa22.89■■□□□ 1.25
CLSTN3-208ENST00000538933 GRIN2AQ12879 1464 aa22.87■■□□□ 1.25
CLSTN3-208ENST00000538933 SHROOM2Q13796 1616 aa22.85■■□□□ 1.25
CLSTN3-208ENST00000538933 NUP160Q12769 1436 aa22.84■■□□□ 1.25
CLSTN3-208ENST00000538933 ADAMTS12P58397 1594 aa22.77■■□□□ 1.24
CLSTN3-208ENST00000538933 KDM4FA0A1W2PPD8 638 aa22.68■■□□□ 1.22
CLSTN3-208ENST00000538933 FHAD1B1AJZ9 1412 aa22.67■■□□□ 1.22
CLSTN3-208ENST00000538933 ABCC10Q5T3U5 1492 aa22.66■■□□□ 1.22
CLSTN3-208ENST00000538933 PRG4Q92954 1404 aaPredicted RBP22.65■■□□□ 1.22
CLSTN3-208ENST00000538933 FAM69CQ0P6D2 419 aa22.64■■□□□ 1.21
CLSTN3-208ENST00000538933 WRNQ14191 1432 aaPredicted RBP eCLIP22.64■■□□□ 1.21
CLSTN3-208ENST00000538933 ILDR1Q86SU0 546 aaPredicted RBP22.63■■□□□ 1.21
CLSTN3-208ENST00000538933 JPH4Q96JJ6 628 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms