RNA–Protein interactions for RNA: ENST00000529332.5

TM9SF1-208, Transcript of transmembrane 9 superfamily member 1, humanhuman

TSL 5

Gene TM9SF1, Length 2,107 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF1-208ENST00000529332 CLIP1P30622 1438 aa24.1■■□□□ 1.45
TM9SF1-208ENST00000529332 FHAD1B1AJZ9 1412 aa24.08■■□□□ 1.45
TM9SF1-208ENST00000529332 CTTNBP2Q8WZ74 1663 aa24.07■■□□□ 1.44
TM9SF1-208ENST00000529332 SNAPC4Q5SXM2 1469 aa24.02■■□□□ 1.44
TM9SF1-208ENST00000529332 MAGI1Q96QZ7 1491 aaPredicted RBP24.02■■□□□ 1.44
TM9SF1-208ENST00000529332 RANGAP1P46060 587 aaPredicted RBP23.94■■□□□ 1.42
TM9SF1-208ENST00000529332 SYNJ2O15056 1496 aa23.9■■□□□ 1.42
TM9SF1-208ENST00000529332 GRIN2AQ12879 1464 aa23.88■■□□□ 1.41
TM9SF1-208ENST00000529332 VPS8Q8N3P4 1428 aa23.88■■□□□ 1.41
TM9SF1-208ENST00000529332 ARHGAP35Q9NRY4 1499 aa23.88■■□□□ 1.41
TM9SF1-208ENST00000529332 EFCAB5A4FU69 1503 aa23.86■■□□□ 1.41
TM9SF1-208ENST00000529332 ARAP1Q96P48 1450 aa23.86■■□□□ 1.41
TM9SF1-208ENST00000529332 IQGAP2Q13576 1575 aa23.82■■□□□ 1.4
TM9SF1-208ENST00000529332 CHMP7Q8WUX9 453 aaPredicted RBP23.81■■□□□ 1.4
TM9SF1-208ENST00000529332 SAMD9Q5K651 1589 aa23.76■■□□□ 1.39
TM9SF1-208ENST00000529332 SCAF1Q9H7N4 1312 aaKnown RBP23.76■■□□□ 1.39
TM9SF1-208ENST00000529332 KIAA0586Q9BVV6 1533 aa23.75■■□□□ 1.39
TM9SF1-208ENST00000529332 FBLN2P98095 1184 aa23.73■■□□□ 1.39
TM9SF1-208ENST00000529332 CEP170Q5SW79 1584 aa23.72■■□□□ 1.39
TM9SF1-208ENST00000529332 CHD1O14646 1710 aa23.71■■□□□ 1.39
TM9SF1-208ENST00000529332 NUP160Q12769 1436 aa23.7■■□□□ 1.38
TM9SF1-208ENST00000529332 DIEXFQ68CQ4 756 aaKnown RBP23.7■■□□□ 1.38
TM9SF1-208ENST00000529332 UGGT2Q9NYU1 1516 aa23.69■■□□□ 1.38
TM9SF1-208ENST00000529332 HNRNPUL2Q1KMD3 747 aaKnown RBP23.67■■□□□ 1.38
TM9SF1-208ENST00000529332 FHOD3Q2V2M9 1422 aa23.66■■□□□ 1.38
TM9SF1-208ENST00000529332 APLP2Q06481 763 aa23.66■■□□□ 1.38
TM9SF1-208ENST00000529332 P3H3Q8IVL6 736 aa23.63■■□□□ 1.37
TM9SF1-208ENST00000529332 FMN1Q68DA7 1419 aa23.62■■□□□ 1.37
TM9SF1-208ENST00000529332 PCF11O94913 1555 aaKnown RBP23.58■■□□□ 1.37
TM9SF1-208ENST00000529332 KIAA0556O60303 1618 aa23.57■■□□□ 1.36
TM9SF1-208ENST00000529332 FYCO1Q9BQS8 1478 aa23.56■■□□□ 1.36
TM9SF1-208ENST00000529332 ZNF316A6NFI3 1004 aaPredicted RBP23.54■■□□□ 1.36
TM9SF1-208ENST00000529332 CASKIN1Q8WXD9 1431 aa23.53■■□□□ 1.36
TM9SF1-208ENST00000529332 DISP1Q96F81 1524 aa23.53■■□□□ 1.36
TM9SF1-208ENST00000529332 ACIN1Q9UKV3 1341 aaKnown RBP23.52■■□□□ 1.36
TM9SF1-208ENST00000529332 MAP3K1Q13233 1512 aa23.52■■□□□ 1.36
TM9SF1-208ENST00000529332 NEUROD1Q13562 356 aa23.5■■□□□ 1.35
TM9SF1-208ENST00000529332 CARMIL2Q6F5E8 1435 aa23.49■■□□□ 1.35
TM9SF1-208ENST00000529332 CFAP43Q8NDM7 1665 aa23.49■■□□□ 1.35
TM9SF1-208ENST00000529332 TIAM1Q13009 1591 aa23.48■■□□□ 1.35
TM9SF1-208ENST00000529332 JPH4Q96JJ6 628 aa23.47■■□□□ 1.35
TM9SF1-208ENST00000529332 SHROOM2Q13796 1616 aa23.43■■□□□ 1.34
TM9SF1-208ENST00000529332 HECW1Q76N89 1606 aa23.42■■□□□ 1.34
TM9SF1-208ENST00000529332 CLASP1Q7Z460 1538 aa23.41■■□□□ 1.34
TM9SF1-208ENST00000529332 KANK4Q5T7N3 995 aaPredicted RBP23.41■■□□□ 1.34
TM9SF1-208ENST00000529332 ATP1B4Q9UN42 357 aaPredicted RBP23.41■■□□□ 1.34
TM9SF1-208ENST00000529332 PRG4Q92954 1404 aaPredicted RBP23.36■■□□□ 1.33
TM9SF1-208ENST00000529332 LRRIQ1Q96JM4 1722 aa23.36■■□□□ 1.33
TM9SF1-208ENST00000529332 CCDC18Q5T9S5 1454 aa23.35■■□□□ 1.33
TM9SF1-208ENST00000529332 CENPBP07199 599 aaPredicted RBP23.35■■□□□ 1.33
TM9SF1-208ENST00000529332 LRRC9Q6ZRR7 1453 aa23.34■■□□□ 1.33
TM9SF1-208ENST00000529332 RAPGEF6Q8TEU7 1601 aa23.34■■□□□ 1.33
TM9SF1-208ENST00000529332 RRBP1Q9P2E9 1410 aaKnown RBP23.28■■□□□ 1.32
TM9SF1-208ENST00000529332 DHX57Q6P158 1386 aaKnown RBP23.27■■□□□ 1.32
TM9SF1-208ENST00000529332 EPRSP07814 1512 aaKnown RBP23.27■■□□□ 1.32
TM9SF1-208ENST00000529332 GTF3C3Q9Y5Q9 886 aa23.24■■□□□ 1.31
TM9SF1-208ENST00000529332 CLSPNQ9HAW4 1339 aa23.23■■□□□ 1.31
TM9SF1-208ENST00000529332 EHBP1L1Q8N3D4 1523 aa23.23■■□□□ 1.31
TM9SF1-208ENST00000529332 NUP153P49790 1475 aaKnown RBP23.22■■□□□ 1.31
TM9SF1-208ENST00000529332 MTUS2Q5JR59 1369 aa23.22■■□□□ 1.31
TM9SF1-208ENST00000529332 ABCA8O94911 1581 aa23.22■■□□□ 1.31
TM9SF1-208ENST00000529332 PLB1Q6P1J6 1458 aa23.21■■□□□ 1.31
TM9SF1-208ENST00000529332 PTPRGP23470 1445 aa23.21■■□□□ 1.31
TM9SF1-208ENST00000529332 MIER1Q8N108 512 aa23.21■■□□□ 1.31
TM9SF1-208ENST00000529332 PELP1Q8IZL8 1130 aaKnown RBP23.2■■□□□ 1.3
TM9SF1-208ENST00000529332 CDK13Q14004 1512 aaKnown RBP23.2■■□□□ 1.3
TM9SF1-208ENST00000529332 OSCARQ8IYS5 282 aa23.18■■□□□ 1.3
TM9SF1-208ENST00000529332 ERCC6L2Q5T890 1561 aa23.18■■□□□ 1.3
TM9SF1-208ENST00000529332 SUPT6HQ7KZ85 1726 aaKnown RBP23.17■■□□□ 1.3
TM9SF1-208ENST00000529332 CCNB3Q8WWL7 1395 aa23.16■■□□□ 1.3
TM9SF1-208ENST00000529332 MAGI3Q5TCQ9 1506 aa23.12■■□□□ 1.29
TM9SF1-208ENST00000529332 YTHDC1Q96MU7 727 aaKnown RBP23.11■■□□□ 1.29
TM9SF1-208ENST00000529332 CDK11AQ9UQ88 783 aaPredicted RBP23.11■■□□□ 1.29
TM9SF1-208ENST00000529332 UACAQ9BZF9 1416 aa23.09■■□□□ 1.29
TM9SF1-208ENST00000529332 ARID3CA6NKF2 412 aa23.08■■□□□ 1.29
TM9SF1-208ENST00000529332 PHLDB1Q86UU1 1377 aa23.07■■□□□ 1.28
TM9SF1-208ENST00000529332 NCOA2Q15596 1464 aa23.07■■□□□ 1.28
TM9SF1-208ENST00000529332 ABCC2Q92887 1545 aa23.06■■□□□ 1.28
TM9SF1-208ENST00000529332 ARHGEF11O15085 1522 aa23.04■■□□□ 1.28
TM9SF1-208ENST00000529332 ATP10BO94823 1461 aa23.02■■□□□ 1.28
TM9SF1-208ENST00000529332 ITGAEP38570 1179 aa23.02■■□□□ 1.28
TM9SF1-208ENST00000529332 TROQ12816 1431 aaPredicted RBP23.01■■□□□ 1.27
TM9SF1-208ENST00000529332 ADCY10Q96PN6 1610 aa23■■□□□ 1.27
TM9SF1-208ENST00000529332 UHRF1BP1LA0JNW5 1464 aa23■■□□□ 1.27
TM9SF1-208ENST00000529332 MYOM3Q5VTT5 1437 aa22.99■■□□□ 1.27
TM9SF1-208ENST00000529332 FGD6Q6ZV73 1430 aa22.97■■□□□ 1.27
TM9SF1-208ENST00000529332 RAB3GAP2Q9H2M9 1393 aa22.95■■□□□ 1.26
TM9SF1-208ENST00000529332 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.94■■□□□ 1.26
TM9SF1-208ENST00000529332 PLEKHD1A6NEE1 506 aa22.94■■□□□ 1.26
TM9SF1-208ENST00000529332 KIF14Q15058 1648 aa22.94■■□□□ 1.26
TM9SF1-208ENST00000529332 ZCCHC11Q5TAX3 1644 aaKnown RBP22.91■■□□□ 1.26
TM9SF1-208ENST00000529332 ITSN2Q9NZM3 1697 aa22.9■■□□□ 1.26
TM9SF1-208ENST00000529332 MAPKBP1O60336 1514 aa22.89■■□□□ 1.26
TM9SF1-208ENST00000529332 PTPN23Q9H3S7 1636 aa22.89■■□□□ 1.26
TM9SF1-208ENST00000529332 FAM50AQ14320 339 aaKnown RBP22.89■■□□□ 1.25
TM9SF1-208ENST00000529332 KDM5BQ9UGL1 1544 aa22.89■■□□□ 1.25
TM9SF1-208ENST00000529332 MIA2Q96PC5 1412 aa22.88■■□□□ 1.25
TM9SF1-208ENST00000529332 SETD5Q9C0A6 1442 aa22.86■■□□□ 1.25
TM9SF1-208ENST00000529332 TCOF1Q13428 1488 aaKnown RBP22.84■■□□□ 1.25
TM9SF1-208ENST00000529332 ABCC10Q5T3U5 1492 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms