RNA–Protein interactions for RNA: ENST00000527154.5

CHMP4A-203, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-203ENST00000527154 JPH4Q96JJ6 628 aa29.73■■■□□ 2.35
CHMP4A-203ENST00000527154 DIP2BQ9P265 1576 aa29.67■■■□□ 2.34
CHMP4A-203ENST00000527154 FAM69CQ0P6D2 419 aa29.66■■■□□ 2.34
CHMP4A-203ENST00000527154 RUSC2Q8N2Y8 1516 aa29.65■■■□□ 2.34
CHMP4A-203ENST00000527154 KDM4FA0A1W2PPD8 638 aa29.6■■■□□ 2.33
CHMP4A-203ENST00000527154 ADCY10Q96PN6 1610 aa29.59■■■□□ 2.33
CHMP4A-203ENST00000527154 NPM1P06748 294 aaKnown RBP eCLIP29.52■■■□□ 2.32
CHMP4A-203ENST00000527154 KDM6BO15054 1643 aa29.5■■■□□ 2.31
CHMP4A-203ENST00000527154 KIAA0586Q9BVV6 1533 aa29.45■■■□□ 2.31
CHMP4A-203ENST00000527154 SUPT5HO00267 1087 aaKnown RBP29.33■■■□□ 2.29
CHMP4A-203ENST00000527154 IGF1RP08069 1367 aa29.32■■■□□ 2.28
CHMP4A-203ENST00000527154 ILDR1Q86SU0 546 aaPredicted RBP29.32■■■□□ 2.28
CHMP4A-203ENST00000527154 TSPOAP1O95153 1857 aa29.27■■■□□ 2.28
CHMP4A-203ENST00000527154 GLI2P10070 1586 aa29.25■■■□□ 2.27
CHMP4A-203ENST00000527154 ABCC2Q92887 1545 aa29.24■■■□□ 2.27
CHMP4A-203ENST00000527154 PTPRGP23470 1445 aa29.23■■■□□ 2.27
CHMP4A-203ENST00000527154 CUL7Q14999 1698 aa29.23■■■□□ 2.27
CHMP4A-203ENST00000527154 PPRC1Q5VV67 1664 aaKnown RBP29.23■■■□□ 2.27
CHMP4A-203ENST00000527154 PLB1Q6P1J6 1458 aa29.18■■■□□ 2.26
CHMP4A-203ENST00000527154 ASXL2Q76L83 1435 aa29.17■■■□□ 2.26
CHMP4A-203ENST00000527154 KIF27Q86VH2 1401 aa29.17■■■□□ 2.26
CHMP4A-203ENST00000527154 UHRF1BP1LA0JNW5 1464 aa29.17■■■□□ 2.26
CHMP4A-203ENST00000527154 TNIKQ9UKE5 1360 aa29.15■■■□□ 2.26
CHMP4A-203ENST00000527154 ADGRL1O94910 1474 aa29.15■■■□□ 2.26
CHMP4A-203ENST00000527154 COL17A1Q9UMD9 1497 aaPredicted RBP29.12■■■□□ 2.25
CHMP4A-203ENST00000527154 CARMIL2Q6F5E8 1435 aa29.09■■■□□ 2.25
CHMP4A-203ENST00000527154 CARMIL1Q5VZK9 1371 aa29.04■■■□□ 2.24
CHMP4A-203ENST00000527154 KDM5BQ9UGL1 1544 aa29.03■■■□□ 2.24
CHMP4A-203ENST00000527154 UACAQ9BZF9 1416 aa29.03■■■□□ 2.24
CHMP4A-203ENST00000527154 EPRSP07814 1512 aaKnown RBP29.02■■■□□ 2.24
CHMP4A-203ENST00000527154 MAP3K4Q9Y6R4 1608 aa29.02■■■□□ 2.24
CHMP4A-203ENST00000527154 DISP1Q96F81 1524 aa29■■■□□ 2.23
CHMP4A-203ENST00000527154 IQGAP2Q13576 1575 aa29■■■□□ 2.23
CHMP4A-203ENST00000527154 HECW2Q9P2P5 1572 aa28.96■■■□□ 2.23
CHMP4A-203ENST00000527154 TEX14Q8IWB6 1497 aa28.94■■■□□ 2.22
CHMP4A-203ENST00000527154 UGGT2Q9NYU1 1516 aa28.88■■■□□ 2.21
CHMP4A-203ENST00000527154 TTBK1Q5TCY1 1321 aaPredicted RBP28.87■■■□□ 2.21
CHMP4A-203ENST00000527154 ZCCHC11Q5TAX3 1644 aaKnown RBP28.84■■■□□ 2.21
CHMP4A-203ENST00000527154 WDR7Q9Y4E6 1490 aa28.78■■■□□ 2.2
CHMP4A-203ENST00000527154 KIAA0556O60303 1618 aa28.77■■■□□ 2.2
CHMP4A-203ENST00000527154 MAGI3Q5TCQ9 1506 aa28.76■■■□□ 2.19
CHMP4A-203ENST00000527154 RAPGEF2Q9Y4G8 1499 aa28.7■■■□□ 2.18
CHMP4A-203ENST00000527154 CFAP43Q8NDM7 1665 aa28.65■■■□□ 2.18
CHMP4A-203ENST00000527154 CD109Q6YHK3 1445 aa28.64■■■□□ 2.18
CHMP4A-203ENST00000527154 ABCA8O94911 1581 aa28.6■■■□□ 2.17
CHMP4A-203ENST00000527154 FBXO41Q8TF61 875 aa28.57■■■□□ 2.16
CHMP4A-203ENST00000527154 ARAP3Q8WWN8 1544 aa28.56■■■□□ 2.16
CHMP4A-203ENST00000527154 KIF21BO75037 1637 aa28.51■■■□□ 2.15
CHMP4A-203ENST00000527154 GOLGA3Q08378 1498 aa28.49■■■□□ 2.15
CHMP4A-203ENST00000527154 ADAMTSL3P82987 1691 aa28.45■■■□□ 2.14
CHMP4A-203ENST00000527154 KCNH8Q96L42 1107 aa28.44■■■□□ 2.14
CHMP4A-203ENST00000527154 CTTNBP2Q8WZ74 1663 aa28.43■■■□□ 2.14
CHMP4A-203ENST00000527154 PTPRMP28827 1452 aa28.43■■■□□ 2.14
CHMP4A-203ENST00000527154 PHLDB1Q86UU1 1377 aa28.42■■■□□ 2.14
CHMP4A-203ENST00000527154 ABCA9Q8IUA7 1624 aa28.34■■■□□ 2.13
CHMP4A-203ENST00000527154 ATP10BO94823 1461 aa28.34■■■□□ 2.13
CHMP4A-203ENST00000527154 PRXQ9BXM0 1461 aa28.33■■■□□ 2.13
CHMP4A-203ENST00000527154 NEO1Q92859 1461 aa28.29■■■□□ 2.12
CHMP4A-203ENST00000527154 PCF11O94913 1555 aaKnown RBP28.28■■■□□ 2.12
CHMP4A-203ENST00000527154 LMTK3Q96Q04 1460 aa28.27■■■□□ 2.12
CHMP4A-203ENST00000527154 BCORL1Q5H9F3 1711 aa28.26■■■□□ 2.12
CHMP4A-203ENST00000527154 FRMPD1Q5SYB0 1578 aa28.25■■■□□ 2.11
CHMP4A-203ENST00000527154 RAPGEF3O95398 923 aa28.22■■■□□ 2.11
CHMP4A-203ENST00000527154 MADDQ8WXG6 1647 aa28.2■■■□□ 2.1
CHMP4A-203ENST00000527154 ARHGEF40Q8TER5 1519 aa28.12■■■□□ 2.09
CHMP4A-203ENST00000527154 SAMD9Q5K651 1589 aa28.11■■■□□ 2.09
CHMP4A-203ENST00000527154 ARID3CA6NKF2 412 aa28.08■■■□□ 2.09
CHMP4A-203ENST00000527154 FHOD3Q2V2M9 1422 aa28.08■■■□□ 2.09
CHMP4A-203ENST00000527154 RAPGEF6Q8TEU7 1601 aa28.06■■■□□ 2.08
CHMP4A-203ENST00000527154 NUP153P49790 1475 aaKnown RBP28.04■■■□□ 2.08
CHMP4A-203ENST00000527154 FAM9AQ8IZU1 332 aaPredicted RBP28.04■■■□□ 2.08
CHMP4A-203ENST00000527154 RICTORQ6R327 1708 aa28.04■■■□□ 2.08
CHMP4A-203ENST00000527154 RIMS1Q86UR5 1692 aaKnown RBP28.02■■■□□ 2.08
CHMP4A-203ENST00000527154 DENND4BO75064 1496 aaPredicted RBP28.02■■■□□ 2.08
CHMP4A-203ENST00000527154 ARID4BQ4LE39 1312 aaPredicted RBP28.01■■■□□ 2.07
CHMP4A-203ENST00000527154 P3H3Q8IVL6 736 aa28.01■■■□□ 2.07
CHMP4A-203ENST00000527154 ZMYM4Q5VZL5 1548 aa28■■■□□ 2.07
CHMP4A-203ENST00000527154 AKNAQ7Z591 1439 aa27.96■■■□□ 2.07
CHMP4A-203ENST00000527154 HSPA2P54652 639 aa27.95■■■□□ 2.06
CHMP4A-203ENST00000527154 SIGLEC1Q9BZZ2 1709 aa27.94■■■□□ 2.06
CHMP4A-203ENST00000527154 FANCAO15360 1455 aa27.94■■■□□ 2.06
CHMP4A-203ENST00000527154 MAGI2Q86UL8 1455 aa27.92■■■□□ 2.06
CHMP4A-203ENST00000527154 CERKQ8TCT0 537 aa27.92■■■□□ 2.06
CHMP4A-203ENST00000527154 POGZQ7Z3K3 1410 aa27.92■■■□□ 2.06
CHMP4A-203ENST00000527154 CFAP74Q9C0B2 1584 aa27.9■■■□□ 2.06
CHMP4A-203ENST00000527154 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.89■■■□□ 2.06
CHMP4A-203ENST00000527154 YEATS2Q9ULM3 1422 aa27.89■■■□□ 2.06
CHMP4A-203ENST00000527154 EFCAB5A4FU69 1503 aa27.88■■■□□ 2.05
CHMP4A-203ENST00000527154 TTC37Q6PGP7 1564 aa27.88■■■□□ 2.05
CHMP4A-203ENST00000527154 ZFYVE16Q7Z3T8 1539 aa27.87■■■□□ 2.05
CHMP4A-203ENST00000527154 PLEKHD1A6NEE1 506 aa27.83■■■□□ 2.05
CHMP4A-203ENST00000527154 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.83■■■□□ 2.05
CHMP4A-203ENST00000527154 HNRNPUL2Q1KMD3 747 aaKnown RBP27.83■■■□□ 2.05
CHMP4A-203ENST00000527154 ARHGEF12Q9NZN5 1544 aa27.81■■■□□ 2.04
CHMP4A-203ENST00000527154 HECW1Q76N89 1606 aa27.79■■■□□ 2.04
CHMP4A-203ENST00000527154 CSRNP3Q8WYN3 585 aa27.79■■■□□ 2.04
CHMP4A-203ENST00000527154 FER1L4A9Z1Z3 1794 aa27.76■■■□□ 2.03
CHMP4A-203ENST00000527154 PLCH2O75038 1416 aa27.73■■■□□ 2.03
CHMP4A-203ENST00000527154 ATP10AO60312 1499 aa27.7■■■□□ 2.03
CHMP4A-203ENST00000527154 SCAPERQ9BY12 1400 aa27.7■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms