RNA–Protein interactions for RNA: ENST00000527154.5

CHMP4A-203, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-203ENST00000527154 NISCHQ9Y2I1 1504 aa42.1■■■■■ 4.33
CHMP4A-203ENST00000527154 ABCC9O60706 1549 aa38.58■■■■□ 3.77
CHMP4A-203ENST00000527154 CCDC180Q9P1Z9 1646 aa38.06■■■■□ 3.68
CHMP4A-203ENST00000527154 DNAJC5BQ9UF47 199 aa36.9■■■■□ 3.5
CHMP4A-203ENST00000527154 RB1CC1Q8TDY2 1594 aa36.5■■■■□ 3.43
CHMP4A-203ENST00000527154 NACADO15069 1562 aa36.16■■■■□ 3.38
CHMP4A-203ENST00000527154 PABPN1Q86U42 306 aaKnown RBP eCLIP35.78■■■■□ 3.32
CHMP4A-203ENST00000527154 UNC13AQ9UPW8 1703 aa35.64■■■■□ 3.3
CHMP4A-203ENST00000527154 MYO15BQ96JP2 1530 aa35.6■■■■□ 3.29
CHMP4A-203ENST00000527154 BICRAQ9NZM4 1560 aa35.57■■■■□ 3.28
CHMP4A-203ENST00000527154 DCAF8L2P0C7V8 631 aa35.47■■■■□ 3.27
CHMP4A-203ENST00000527154 SHROOM4Q9ULL8 1493 aa35.1■■■■□ 3.21
CHMP4A-203ENST00000527154 CECR2Q9BXF3 1484 aa34.89■■■■□ 3.18
CHMP4A-203ENST00000527154 CC2D2AQ9P2K1 1620 aa34.88■■■■□ 3.17
CHMP4A-203ENST00000527154 DCAF1Q9Y4B6 1507 aa34.86■■■■□ 3.17
CHMP4A-203ENST00000527154 ZCCHC6Q5VYS8 1495 aaKnown RBP34.78■■■■□ 3.16
CHMP4A-203ENST00000527154 EIF4G1Q04637 1599 aaKnown RBP34.69■■■■□ 3.14
CHMP4A-203ENST00000527154 SCRIBQ14160 1630 aa34.49■■■■□ 3.11
CHMP4A-203ENST00000527154 DNAJC5Q9H3Z4 198 aa34.39■■■■□ 3.1
CHMP4A-203ENST00000527154 CUX2O14529 1486 aa33.67■■■□□ 2.98
CHMP4A-203ENST00000527154 NCAPD3P42695 1498 aa33.45■■■□□ 2.95
CHMP4A-203ENST00000527154 ERCC6Q03468 1493 aa33.31■■■□□ 2.92
CHMP4A-203ENST00000527154 ATAD2BQ9ULI0 1458 aa33.19■■■□□ 2.9
CHMP4A-203ENST00000527154 HMGXB3Q12766 1538 aa33.11■■■□□ 2.89
CHMP4A-203ENST00000527154 SMARCA2P51531 1590 aa33.04■■■□□ 2.88
CHMP4A-203ENST00000527154 NESP48681 1621 aa32.99■■■□□ 2.87
CHMP4A-203ENST00000527154 SMARCA4P51532 1647 aa32.95■■■□□ 2.86
CHMP4A-203ENST00000527154 THOC2Q8NI27 1593 aaKnown RBP32.87■■■□□ 2.85
CHMP4A-203ENST00000527154 PEG3Q9GZU2 1588 aa32.77■■■□□ 2.84
CHMP4A-203ENST00000527154 BAZ1BQ9UIG0 1483 aaKnown RBP32.75■■■□□ 2.83
CHMP4A-203ENST00000527154 LAMC3Q9Y6N6 1575 aa32.72■■■□□ 2.83
CHMP4A-203ENST00000527154 BAZ1AQ9NRL2 1556 aaPredicted RBP32.69■■■□□ 2.82
CHMP4A-203ENST00000527154 PDS5BQ9NTI5 1447 aa32.53■■■□□ 2.8
CHMP4A-203ENST00000527154 KIF21AQ7Z4S6 1674 aa32.5■■■□□ 2.79
CHMP4A-203ENST00000527154 MROH2BQ7Z745 1585 aa32.4■■■□□ 2.78
CHMP4A-203ENST00000527154 TRIM41Q8WV44 630 aa32.34■■■□□ 2.77
CHMP4A-203ENST00000527154 CADPSQ9ULU8 1353 aa32.33■■■□□ 2.77
CHMP4A-203ENST00000527154 WDR62O43379 1518 aa32.3■■■□□ 2.76
CHMP4A-203ENST00000527154 MRC2Q9UBG0 1479 aa32.29■■■□□ 2.76
CHMP4A-203ENST00000527154 CEP164Q9UPV0 1460 aa31.99■■■□□ 2.71
CHMP4A-203ENST00000527154 OSCARQ8IYS5 282 aa31.92■■■□□ 2.7
CHMP4A-203ENST00000527154 FANCD2Q9BXW9 1451 aa31.91■■■□□ 2.7
CHMP4A-203ENST00000527154 WIZO95785 1651 aa31.9■■■□□ 2.7
CHMP4A-203ENST00000527154 CFTRP13569 1480 aa31.87■■■□□ 2.69
CHMP4A-203ENST00000527154 URB2Q14146 1524 aaKnown RBP31.73■■■□□ 2.67
CHMP4A-203ENST00000527154 RIMBP3CA6NJZ7 1639 aa31.58■■■□□ 2.65
CHMP4A-203ENST00000527154 RIMBP3BA6NNM3 1639 aa31.58■■■□□ 2.65
CHMP4A-203ENST00000527154 RIMBP3Q9UFD9 1639 aa31.58■■■□□ 2.65
CHMP4A-203ENST00000527154 TOP2AP11388 1531 aaKnown RBP31.53■■■□□ 2.64
CHMP4A-203ENST00000527154 RSF1Q96T23 1441 aaPredicted RBP31.52■■■□□ 2.64
CHMP4A-203ENST00000527154 ARHGEF11O15085 1522 aa31.45■■■□□ 2.63
CHMP4A-203ENST00000527154 IFT140Q96RY7 1462 aa31.43■■■□□ 2.62
CHMP4A-203ENST00000527154 ZNF608Q9ULD9 1512 aaPredicted RBP31.42■■■□□ 2.62
CHMP4A-203ENST00000527154 PRDM2Q13029 1718 aa31.35■■■□□ 2.61
CHMP4A-203ENST00000527154 TOPBP1Q92547 1522 aa31.25■■■□□ 2.59
CHMP4A-203ENST00000527154 EIF4G3O43432 1585 aaKnown RBP31.19■■■□□ 2.58
CHMP4A-203ENST00000527154 ABCC8Q09428 1581 aa31.17■■■□□ 2.58
CHMP4A-203ENST00000527154 CCDC88BA6NC98 1476 aa31.16■■■□□ 2.58
CHMP4A-203ENST00000527154 CYB5RLQ6IPT4 315 aa31.14■■■□□ 2.58
CHMP4A-203ENST00000527154 ARAP1Q96P48 1450 aa31.13■■■□□ 2.57
CHMP4A-203ENST00000527154 DNMBPQ6XZF7 1577 aa31.08■■■□□ 2.57
CHMP4A-203ENST00000527154 TARBP1Q13395 1621 aaKnown RBP31.06■■■□□ 2.56
CHMP4A-203ENST00000527154 CHD1O14646 1710 aa31.02■■■□□ 2.56
CHMP4A-203ENST00000527154 AQRO60306 1485 aaKnown RBP eCLIP31.01■■■□□ 2.568e-12■■■■■ 36.3
CHMP4A-203ENST00000527154 POLA1P09884 1462 aaPredicted RBP30.91■■■□□ 2.54
CHMP4A-203ENST00000527154 TRHP20396 242 aaPredicted RBP30.91■■■□□ 2.54
CHMP4A-203ENST00000527154 CLASP1Q7Z460 1538 aa30.81■■■□□ 2.52
CHMP4A-203ENST00000527154 FBLN2P98095 1184 aa30.76■■■□□ 2.51
CHMP4A-203ENST00000527154 WDR97A6NE52 1622 aa30.75■■■□□ 2.51
CHMP4A-203ENST00000527154 RAD54L2Q9Y4B4 1467 aa30.75■■■□□ 2.51
CHMP4A-203ENST00000527154 TDRD9Q8NDG6 1382 aaKnown RBP30.7■■■□□ 2.51
CHMP4A-203ENST00000527154 SOGA1O94964 1423 aa30.7■■■□□ 2.5
CHMP4A-203ENST00000527154 SNAPC4Q5SXM2 1469 aa30.69■■■□□ 2.5
CHMP4A-203ENST00000527154 MAGI1Q96QZ7 1491 aaPredicted RBP30.64■■■□□ 2.5
CHMP4A-203ENST00000527154 SYNJ1O43426 1573 aa30.62■■■□□ 2.49
CHMP4A-203ENST00000527154 FGD5Q6ZNL6 1462 aa30.57■■■□□ 2.48
CHMP4A-203ENST00000527154 GRIN2BQ13224 1484 aa30.55■■■□□ 2.48
CHMP4A-203ENST00000527154 CHMP7Q8WUX9 453 aaPredicted RBP30.54■■■□□ 2.48
CHMP4A-203ENST00000527154 SYNJ2O15056 1496 aa30.54■■■□□ 2.48
CHMP4A-203ENST00000527154 CUX1P39880 1505 aa30.47■■■□□ 2.47
CHMP4A-203ENST00000527154 AEBP2Q6ZN18 517 aaPredicted RBP30.47■■■□□ 2.47
CHMP4A-203ENST00000527154 GAPVD1Q14C86 1478 aa30.44■■■□□ 2.46
CHMP4A-203ENST00000527154 PBRM1Q86U86 1689 aa30.29■■■□□ 2.44
CHMP4A-203ENST00000527154 ABCA10Q8WWZ4 1543 aa30.27■■■□□ 2.44
CHMP4A-203ENST00000527154 ABCA5Q8WWZ7 1642 aa30.25■■■□□ 2.43
CHMP4A-203ENST00000527154 ERCC6L2Q5T890 1561 aa30.2■■■□□ 2.42
CHMP4A-203ENST00000527154 NUP160Q12769 1436 aa30.17■■■□□ 2.42
CHMP4A-203ENST00000527154 GRIN2AQ12879 1464 aa30.16■■■□□ 2.42
CHMP4A-203ENST00000527154 CEP170Q5SW79 1584 aa30.11■■■□□ 2.41
CHMP4A-203ENST00000527154 SHROOM2Q13796 1616 aa30.08■■■□□ 2.41
CHMP4A-203ENST00000527154 ADAMTS12P58397 1594 aa30.05■■■□□ 2.4
CHMP4A-203ENST00000527154 FHAD1B1AJZ9 1412 aa29.96■■■□□ 2.39
CHMP4A-203ENST00000527154 KIF13AQ9H1H9 1805 aa29.95■■■□□ 2.39
CHMP4A-203ENST00000527154 WRNQ14191 1432 aaPredicted RBP eCLIP29.95■■■□□ 2.38
CHMP4A-203ENST00000527154 ERICH3Q5RHP9 1530 aa29.86■■■□□ 2.37
CHMP4A-203ENST00000527154 BIVM-ERCC5R4GMW8 1640 aa29.82■■■□□ 2.36
CHMP4A-203ENST00000527154 TOP2BQ02880 1626 aa29.81■■■□□ 2.36
CHMP4A-203ENST00000527154 ABCC10Q5T3U5 1492 aa29.8■■■□□ 2.36
CHMP4A-203ENST00000527154 PRG4Q92954 1404 aaPredicted RBP29.79■■■□□ 2.36
CHMP4A-203ENST00000527154 MAPKBP1O60336 1514 aa29.75■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 122.8 ms