RNA–Protein interactions for RNA: ENST00000513139.1

SPCS3-204, Transcript of signal peptidase complex subunit 3, humanhuman

TSL 2

Gene SPCS3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3-204ENST00000513139 PRG4Q92954 1404 aaPredicted RBP25.18■■□□□ 1.62
SPCS3-204ENST00000513139 JPH4Q96JJ6 628 aa25.14■■□□□ 1.62
SPCS3-204ENST00000513139 ABCC10Q5T3U5 1492 aa25.09■■□□□ 1.61
SPCS3-204ENST00000513139 MAPKBP1O60336 1514 aa25.08■■□□□ 1.61
SPCS3-204ENST00000513139 RUSC2Q8N2Y8 1516 aa25.07■■□□□ 1.6
SPCS3-204ENST00000513139 SUPT5HO00267 1087 aaKnown RBP25.05■■□□□ 1.6
SPCS3-204ENST00000513139 FAM69CQ0P6D2 419 aa25.04■■□□□ 1.6
SPCS3-204ENST00000513139 NPM1P06748 294 aaKnown RBP eCLIP25.03■■□□□ 1.6
SPCS3-204ENST00000513139 DIP2BQ9P265 1576 aa25.02■■□□□ 1.6
SPCS3-204ENST00000513139 ADCY10Q96PN6 1610 aa25■■□□□ 1.59
SPCS3-204ENST00000513139 KDM6BO15054 1643 aa24.94■■□□□ 1.58
SPCS3-204ENST00000513139 TSPOAP1O95153 1857 aa24.9■■□□□ 1.58
SPCS3-204ENST00000513139 KIAA0586Q9BVV6 1533 aa24.9■■□□□ 1.58
SPCS3-204ENST00000513139 KDM4FA0A1W2PPD8 638 aa24.84■■□□□ 1.57
SPCS3-204ENST00000513139 CUL7Q14999 1698 aa24.84■■□□□ 1.57
SPCS3-204ENST00000513139 IGF1RP08069 1367 aa24.79■■□□□ 1.56
SPCS3-204ENST00000513139 KIF27Q86VH2 1401 aa24.74■■□□□ 1.55
SPCS3-204ENST00000513139 PTPRGP23470 1445 aa24.73■■□□□ 1.55
SPCS3-204ENST00000513139 ABCC2Q92887 1545 aa24.69■■□□□ 1.54
SPCS3-204ENST00000513139 GLI2P10070 1586 aa24.68■■□□□ 1.54
SPCS3-204ENST00000513139 PPRC1Q5VV67 1664 aaKnown RBP24.67■■□□□ 1.54
SPCS3-204ENST00000513139 CARMIL2Q6F5E8 1435 aa24.67■■□□□ 1.54
SPCS3-204ENST00000513139 TNIKQ9UKE5 1360 aa24.66■■□□□ 1.54
SPCS3-204ENST00000513139 PLB1Q6P1J6 1458 aa24.65■■□□□ 1.54
SPCS3-204ENST00000513139 ASXL2Q76L83 1435 aa24.62■■□□□ 1.53
SPCS3-204ENST00000513139 UHRF1BP1LA0JNW5 1464 aa24.61■■□□□ 1.53
SPCS3-204ENST00000513139 CARMIL1Q5VZK9 1371 aa24.6■■□□□ 1.53
SPCS3-204ENST00000513139 IQGAP2Q13576 1575 aa24.59■■□□□ 1.53
SPCS3-204ENST00000513139 ILDR1Q86SU0 546 aaPredicted RBP24.55■■□□□ 1.52
SPCS3-204ENST00000513139 ADGRL1O94910 1474 aa24.55■■□□□ 1.52
SPCS3-204ENST00000513139 TTBK1Q5TCY1 1321 aaPredicted RBP24.54■■□□□ 1.52
SPCS3-204ENST00000513139 MAP3K4Q9Y6R4 1608 aa24.53■■□□□ 1.52
SPCS3-204ENST00000513139 UACAQ9BZF9 1416 aa24.53■■□□□ 1.52
SPCS3-204ENST00000513139 KDM5BQ9UGL1 1544 aa24.5■■□□□ 1.51
SPCS3-204ENST00000513139 PLPPR3Q6T4P5 718 aa24.49■■□□□ 1.51
SPCS3-204ENST00000513139 EPRSP07814 1512 aaKnown RBP24.49■■□□□ 1.51
SPCS3-204ENST00000513139 DISP1Q96F81 1524 aa24.49■■□□□ 1.51
SPCS3-204ENST00000513139 TEX14Q8IWB6 1497 aa24.48■■□□□ 1.51
SPCS3-204ENST00000513139 COL17A1Q9UMD9 1497 aaPredicted RBP24.47■■□□□ 1.51
SPCS3-204ENST00000513139 ZCCHC11Q5TAX3 1644 aaKnown RBP24.45■■□□□ 1.5
SPCS3-204ENST00000513139 UGGT2Q9NYU1 1516 aa24.43■■□□□ 1.5
SPCS3-204ENST00000513139 HECW2Q9P2P5 1572 aa24.38■■□□□ 1.49
SPCS3-204ENST00000513139 KIAA0556O60303 1618 aa24.37■■□□□ 1.49
SPCS3-204ENST00000513139 RAPGEF2Q9Y4G8 1499 aa24.34■■□□□ 1.49
SPCS3-204ENST00000513139 WDR7Q9Y4E6 1490 aa24.32■■□□□ 1.48
SPCS3-204ENST00000513139 CFAP43Q8NDM7 1665 aa24.29■■□□□ 1.48
SPCS3-204ENST00000513139 MAGI3Q5TCQ9 1506 aa24.26■■□□□ 1.47
SPCS3-204ENST00000513139 CTTNBP2Q8WZ74 1663 aa24.25■■□□□ 1.47
SPCS3-204ENST00000513139 CD109Q6YHK3 1445 aa24.22■■□□□ 1.47
SPCS3-204ENST00000513139 ABCA8O94911 1581 aa24.19■■□□□ 1.46
SPCS3-204ENST00000513139 GOLGA3Q08378 1498 aa24.19■■□□□ 1.46
SPCS3-204ENST00000513139 KIF21BO75037 1637 aa24.13■■□□□ 1.45
SPCS3-204ENST00000513139 KCNH8Q96L42 1107 aa24.12■■□□□ 1.45
SPCS3-204ENST00000513139 ARAP3Q8WWN8 1544 aa24.1■■□□□ 1.45
SPCS3-204ENST00000513139 PHLDB1Q86UU1 1377 aa24.02■■□□□ 1.44
SPCS3-204ENST00000513139 ADAMTSL3P82987 1691 aa24■■□□□ 1.43
SPCS3-204ENST00000513139 ABCA9Q8IUA7 1624 aa23.99■■□□□ 1.43
SPCS3-204ENST00000513139 FBXO41Q8TF61 875 aa23.99■■□□□ 1.43
SPCS3-204ENST00000513139 FAM9AQ8IZU1 332 aaPredicted RBP23.98■■□□□ 1.43
SPCS3-204ENST00000513139 PRXQ9BXM0 1461 aa23.98■■□□□ 1.43
SPCS3-204ENST00000513139 ATP10BO94823 1461 aa23.96■■□□□ 1.43
SPCS3-204ENST00000513139 PTPRMP28827 1452 aa23.94■■□□□ 1.42
SPCS3-204ENST00000513139 NEO1Q92859 1461 aa23.9■■□□□ 1.42
SPCS3-204ENST00000513139 BCORL1Q5H9F3 1711 aa23.9■■□□□ 1.42
SPCS3-204ENST00000513139 ARID3CA6NKF2 412 aa23.84■■□□□ 1.41
SPCS3-204ENST00000513139 RAPGEF3O95398 923 aa23.84■■□□□ 1.41
SPCS3-204ENST00000513139 RAPGEF6Q8TEU7 1601 aa23.84■■□□□ 1.41
SPCS3-204ENST00000513139 SAMD9Q5K651 1589 aa23.83■■□□□ 1.41
SPCS3-204ENST00000513139 FRMPD1Q5SYB0 1578 aa23.83■■□□□ 1.41
SPCS3-204ENST00000513139 PCF11O94913 1555 aaKnown RBP23.82■■□□□ 1.4
SPCS3-204ENST00000513139 MADDQ8WXG6 1647 aa23.82■■□□□ 1.4
SPCS3-204ENST00000513139 P3H3Q8IVL6 736 aa23.8■■□□□ 1.4
SPCS3-204ENST00000513139 LMTK3Q96Q04 1460 aa23.78■■□□□ 1.4
SPCS3-204ENST00000513139 RICTORQ6R327 1708 aa23.76■■□□□ 1.39
SPCS3-204ENST00000513139 ARHGEF40Q8TER5 1519 aa23.75■■□□□ 1.39
SPCS3-204ENST00000513139 ARID4BQ4LE39 1312 aaPredicted RBP23.75■■□□□ 1.39
SPCS3-204ENST00000513139 RIMS1Q86UR5 1692 aaKnown RBP23.74■■□□□ 1.39
SPCS3-204ENST00000513139 FOXD1Q16676 465 aa23.72■■□□□ 1.39
SPCS3-204ENST00000513139 NUP153P49790 1475 aaKnown RBP23.72■■□□□ 1.39
SPCS3-204ENST00000513139 CFAP74Q9C0B2 1584 aa23.71■■□□□ 1.39
SPCS3-204ENST00000513139 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.71■■□□□ 1.39
SPCS3-204ENST00000513139 HNRNPUL2Q1KMD3 747 aaKnown RBP23.71■■□□□ 1.39
SPCS3-204ENST00000513139 DENND4BO75064 1496 aaPredicted RBP23.69■■□□□ 1.38
SPCS3-204ENST00000513139 FHOD3Q2V2M9 1422 aa23.67■■□□□ 1.38
SPCS3-204ENST00000513139 ZMYM4Q5VZL5 1548 aa23.65■■□□□ 1.38
SPCS3-204ENST00000513139 AKNAQ7Z591 1439 aa23.65■■□□□ 1.38
SPCS3-204ENST00000513139 FANCAO15360 1455 aa23.64■■□□□ 1.38
SPCS3-204ENST00000513139 CSRNP3Q8WYN3 585 aa23.64■■□□□ 1.37
SPCS3-204ENST00000513139 POGZQ7Z3K3 1410 aa23.64■■□□□ 1.37
SPCS3-204ENST00000513139 PLEKHD1A6NEE1 506 aa23.63■■□□□ 1.37
SPCS3-204ENST00000513139 EFCAB5A4FU69 1503 aa23.61■■□□□ 1.37
SPCS3-204ENST00000513139 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.6■■□□□ 1.372e-6■■■□□ 18.3
SPCS3-204ENST00000513139 MAGI2Q86UL8 1455 aa23.6■■□□□ 1.37
SPCS3-204ENST00000513139 SIGLEC1Q9BZZ2 1709 aa23.59■■□□□ 1.37
SPCS3-204ENST00000513139 ZFYVE16Q7Z3T8 1539 aa23.59■■□□□ 1.37
SPCS3-204ENST00000513139 FER1L4A9Z1Z3 1794 aa23.57■■□□□ 1.36
SPCS3-204ENST00000513139 TTC37Q6PGP7 1564 aa23.57■■□□□ 1.36
SPCS3-204ENST00000513139 HSPA2P54652 639 aa23.56■■□□□ 1.36
SPCS3-204ENST00000513139 YEATS2Q9ULM3 1422 aa23.53■■□□□ 1.36
SPCS3-204ENST00000513139 HECW1Q76N89 1606 aa23.52■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms