RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CLIP1P30622 1438 aa13.38□□□□□ -0.27
LIMCH1-209ENST00000509277 TNIKQ9UKE5 1360 aa13.37□□□□□ -0.27
LIMCH1-209ENST00000509277 PRXQ9BXM0 1461 aa13.37□□□□□ -0.27
LIMCH1-209ENST00000509277 FHAD1B1AJZ9 1412 aa13.33□□□□□ -0.28
LIMCH1-209ENST00000509277 ABCA5Q8WWZ7 1642 aa13.32□□□□□ -0.28
LIMCH1-209ENST00000509277 PBRM1Q86U86 1689 aa13.3□□□□□ -0.28
LIMCH1-209ENST00000509277 KIF21BO75037 1637 aa13.3□□□□□ -0.28
LIMCH1-209ENST00000509277 ERICH3Q5RHP9 1530 aa13.29□□□□□ -0.28
LIMCH1-209ENST00000509277 WDR97A6NE52 1622 aa13.29□□□□□ -0.28
LIMCH1-209ENST00000509277 JPH4Q96JJ6 628 aa13.28□□□□□ -0.28
LIMCH1-209ENST00000509277 FHOD3Q2V2M9 1422 aa13.28□□□□□ -0.28
LIMCH1-209ENST00000509277 GRIN2AQ12879 1464 aa13.24□□□□□ -0.29
LIMCH1-209ENST00000509277 SYNJ2O15056 1496 aa13.24□□□□□ -0.29
LIMCH1-209ENST00000509277 CUL7Q14999 1698 aa13.24□□□□□ -0.29
LIMCH1-209ENST00000509277 OSCARQ8IYS5 282 aa13.23□□□□□ -0.29
LIMCH1-209ENST00000509277 ADAMTS12P58397 1594 aa13.23□□□□□ -0.29
LIMCH1-209ENST00000509277 MAGI1Q96QZ7 1491 aaPredicted RBP13.23□□□□□ -0.29
LIMCH1-209ENST00000509277 ITGAEP38570 1179 aa13.2□□□□□ -0.3
LIMCH1-209ENST00000509277 YTHDC1Q96MU7 727 aaKnown RBP13.18□□□□□ -0.3
LIMCH1-209ENST00000509277 ARAP1Q96P48 1450 aa13.17□□□□□ -0.3
LIMCH1-209ENST00000509277 ARHGAP35Q9NRY4 1499 aa13.17□□□□□ -0.3
LIMCH1-209ENST00000509277 CHD1O14646 1710 aa13.15□□□□□ -0.3
LIMCH1-209ENST00000509277 GTF3C3Q9Y5Q9 886 aa13.15□□□□□ -0.3
LIMCH1-209ENST00000509277 PRG4Q92954 1404 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-209ENST00000509277 MYT1Q01538 1121 aa13.14□□□□□ -0.31
LIMCH1-209ENST00000509277 KANK4Q5T7N3 995 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-209ENST00000509277 IQGAP2Q13576 1575 aa13.13□□□□□ -0.31
LIMCH1-209ENST00000509277 CEP170Q5SW79 1584 aa13.13□□□□□ -0.31
LIMCH1-209ENST00000509277 CYB5RLQ6IPT4 315 aa13.12□□□□□ -0.31
LIMCH1-209ENST00000509277 KIAA0586Q9BVV6 1533 aa13.12□□□□□ -0.31
LIMCH1-209ENST00000509277 VPS8Q8N3P4 1428 aa13.12□□□□□ -0.31
LIMCH1-209ENST00000509277 CARMIL2Q6F5E8 1435 aa13.11□□□□□ -0.31
LIMCH1-209ENST00000509277 KCNH8Q96L42 1107 aa13.1□□□□□ -0.31
LIMCH1-209ENST00000509277 CTTNBP2Q8WZ74 1663 aa13.09□□□□□ -0.31
LIMCH1-209ENST00000509277 FAM50AQ14320 339 aaKnown RBP13.07□□□□□ -0.32
LIMCH1-209ENST00000509277 PTPRGP23470 1445 aa13.06□□□□□ -0.32
LIMCH1-209ENST00000509277 NUP160Q12769 1436 aa13.05□□□□□ -0.32
LIMCH1-209ENST00000509277 MTUS2Q5JR59 1369 aa13.05□□□□□ -0.32
LIMCH1-209ENST00000509277 NEUROD1Q13562 356 aa13.05□□□□□ -0.32
LIMCH1-209ENST00000509277 TRIM26Q12899 539 aaPredicted RBP13.04□□□□□ -0.32
LIMCH1-209ENST00000509277 ZNF777Q9ULD5 760 aaPredicted RBP13.04□□□□□ -0.32
LIMCH1-209ENST00000509277 FMN1Q68DA7 1419 aa13.03□□□□□ -0.32
LIMCH1-209ENST00000509277 PLB1Q6P1J6 1458 aa13.02□□□□□ -0.32
LIMCH1-209ENST00000509277 ERCC6L2Q5T890 1561 aa13.02□□□□□ -0.33
LIMCH1-209ENST00000509277 NPM1P06748 294 aaKnown RBP eCLIP13.01□□□□□ -0.33
LIMCH1-209ENST00000509277 DISP1Q96F81 1524 aa12.99□□□□□ -0.33
LIMCH1-209ENST00000509277 PLEKHD1A6NEE1 506 aa12.98□□□□□ -0.33
LIMCH1-209ENST00000509277 CDK11AQ9UQ88 783 aaPredicted RBP12.98□□□□□ -0.33
LIMCH1-209ENST00000509277 PCF11O94913 1555 aaKnown RBP12.98□□□□□ -0.33
LIMCH1-209ENST00000509277 EFCAB5A4FU69 1503 aa12.97□□□□□ -0.33
LIMCH1-209ENST00000509277 CDK13Q14004 1512 aaKnown RBP12.96□□□□□ -0.33
LIMCH1-209ENST00000509277 KIAA0556O60303 1618 aa12.95□□□□□ -0.34
LIMCH1-209ENST00000509277 CENPBP07199 599 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-209ENST00000509277 MYT1LQ9UL68 1186 aa12.94□□□□□ -0.34
LIMCH1-209ENST00000509277 ACIN1Q9UKV3 1341 aaKnown RBP12.94□□□□□ -0.34
LIMCH1-209ENST00000509277 UGGT2Q9NYU1 1516 aa12.94□□□□□ -0.34
LIMCH1-209ENST00000509277 CHIC2Q9UKJ5 165 aa12.92□□□□□ -0.34
LIMCH1-209ENST00000509277 CASKIN1Q8WXD9 1431 aa12.91□□□□□ -0.34
LIMCH1-209ENST00000509277 SAMD9Q5K651 1589 aa12.9□□□□□ -0.34
LIMCH1-209ENST00000509277 FYCO1Q9BQS8 1478 aa12.87□□□□□ -0.35
LIMCH1-209ENST00000509277 UACAQ9BZF9 1416 aa12.87□□□□□ -0.35
LIMCH1-209ENST00000509277 EPRSP07814 1512 aaKnown RBP12.86□□□□□ -0.35
LIMCH1-209ENST00000509277 CLASP1Q7Z460 1538 aa12.85□□□□□ -0.35
LIMCH1-209ENST00000509277 TRHP20396 242 aaPredicted RBP12.85□□□□□ -0.35
LIMCH1-209ENST00000509277 CFDP1Q9UEE9 299 aaPredicted RBP12.85□□□□□ -0.35
LIMCH1-209ENST00000509277 NUP153P49790 1475 aaKnown RBP12.85□□□□□ -0.35
LIMCH1-209ENST00000509277 LRRC9Q6ZRR7 1453 aa12.84□□□□□ -0.35
LIMCH1-209ENST00000509277 ZNF644Q9H582 1327 aaPredicted RBP12.84□□□□□ -0.35
LIMCH1-209ENST00000509277 CCER1Q8TC90 406 aaPredicted RBP12.83□□□□□ -0.35
LIMCH1-209ENST00000509277 TIAM1Q13009 1591 aa12.83□□□□□ -0.35
LIMCH1-209ENST00000509277 RAPGEF6Q8TEU7 1601 aa12.83□□□□□ -0.35
LIMCH1-209ENST00000509277 PHLDB1Q86UU1 1377 aa12.83□□□□□ -0.36
LIMCH1-209ENST00000509277 HECW1Q76N89 1606 aa12.83□□□□□ -0.36
LIMCH1-209ENST00000509277 CCNB3Q8WWL7 1395 aa12.82□□□□□ -0.36
LIMCH1-209ENST00000509277 ARHGEF11O15085 1522 aa12.82□□□□□ -0.36
LIMCH1-209ENST00000509277 ZEB1P37275 1124 aaPredicted RBP12.81□□□□□ -0.36
LIMCH1-209ENST00000509277 ATP10BO94823 1461 aa12.81□□□□□ -0.36
LIMCH1-209ENST00000509277 RRP7BPQ9NSQ0 103 aa12.8□□□□□ -0.36
LIMCH1-209ENST00000509277 CCDC18Q5T9S5 1454 aa12.78□□□□□ -0.36
LIMCH1-209ENST00000509277 HNRNPMP52272 730 aaKnown RBP eCLIP12.77□□□□□ -0.36
LIMCH1-209ENST00000509277 NCOA2Q15596 1464 aa12.77□□□□□ -0.36
LIMCH1-209ENST00000509277 FAM69CQ0P6D2 419 aa12.76□□□□□ -0.37
LIMCH1-209ENST00000509277 MAGI3Q5TCQ9 1506 aa12.76□□□□□ -0.37
LIMCH1-209ENST00000509277 DIEXFQ68CQ4 756 aaKnown RBP12.75□□□□□ -0.37
LIMCH1-209ENST00000509277 SHROOM2Q13796 1616 aa12.74□□□□□ -0.37
LIMCH1-209ENST00000509277 LRRIQ1Q96JM4 1722 aa12.74□□□□□ -0.37
LIMCH1-209ENST00000509277 TROQ12816 1431 aaPredicted RBP12.73□□□□□ -0.37
LIMCH1-209ENST00000509277 TRIM52Q96A61 297 aa12.73□□□□□ -0.37
LIMCH1-209ENST00000509277 RIMBP3CA6NJZ7 1639 aa12.72□□□□□ -0.37
LIMCH1-209ENST00000509277 RIMBP3BA6NNM3 1639 aa12.72□□□□□ -0.37
LIMCH1-209ENST00000509277 RIMBP3Q9UFD9 1639 aa12.72□□□□□ -0.37
LIMCH1-209ENST00000509277 ABCA8O94911 1581 aa12.72□□□□□ -0.37
LIMCH1-209ENST00000509277 ABCC2Q92887 1545 aa12.72□□□□□ -0.37
LIMCH1-209ENST00000509277 BCL11AQ9H165 835 aa12.7□□□□□ -0.38
LIMCH1-209ENST00000509277 ASXL2Q76L83 1435 aa12.7□□□□□ -0.38
LIMCH1-209ENST00000509277 EHBP1L1Q8N3D4 1523 aa12.69□□□□□ -0.38
LIMCH1-209ENST00000509277 TSPY4P0CV99 314 aa12.69□□□□□ -0.38
LIMCH1-209ENST00000509277 TSPY10P0CW01 314 aa12.69□□□□□ -0.38
LIMCH1-209ENST00000509277 FGD6Q6ZV73 1430 aa12.68□□□□□ -0.38
LIMCH1-209ENST00000509277 CFAP43Q8NDM7 1665 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms