RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 AQRO60306 1485 aaKnown RBP eCLIP16.76■□□□□ 0.27
SH3RF1-203ENST00000508685 EIF4G3O43432 1585 aaKnown RBP16.73■□□□□ 0.27
SH3RF1-203ENST00000508685 PBRM1Q86U86 1689 aa16.72■□□□□ 0.27
SH3RF1-203ENST00000508685 CTTNBP2Q8WZ74 1663 aa16.72■□□□□ 0.27
SH3RF1-203ENST00000508685 P3H3Q8IVL6 736 aa16.69■□□□□ 0.26
SH3RF1-203ENST00000508685 KANK4Q5T7N3 995 aaPredicted RBP16.68■□□□□ 0.26
SH3RF1-203ENST00000508685 FHOD3Q2V2M9 1422 aa16.66■□□□□ 0.26
SH3RF1-203ENST00000508685 GRIN2BQ13224 1484 aa16.65■□□□□ 0.26
SH3RF1-203ENST00000508685 CCER1Q8TC90 406 aaPredicted RBP16.65■□□□□ 0.26
SH3RF1-203ENST00000508685 ADAMTS12P58397 1594 aa16.65■□□□□ 0.26
SH3RF1-203ENST00000508685 OSCARQ8IYS5 282 aa16.64■□□□□ 0.25
SH3RF1-203ENST00000508685 EFCAB5A4FU69 1503 aa16.64■□□□□ 0.25
SH3RF1-203ENST00000508685 FHAD1B1AJZ9 1412 aa16.64■□□□□ 0.25
SH3RF1-203ENST00000508685 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.63■□□□□ 0.25
SH3RF1-203ENST00000508685 PCF11O94913 1555 aaKnown RBP16.61■□□□□ 0.25
SH3RF1-203ENST00000508685 TIAM1Q13009 1591 aa16.58■□□□□ 0.24
SH3RF1-203ENST00000508685 FBLN2P98095 1184 aa16.58■□□□□ 0.24
SH3RF1-203ENST00000508685 SNAPC4Q5SXM2 1469 aa16.58■□□□□ 0.24
SH3RF1-203ENST00000508685 SAMD9Q5K651 1589 aa16.58■□□□□ 0.24
SH3RF1-203ENST00000508685 HNRNPUL2Q1KMD3 747 aaKnown RBP16.57■□□□□ 0.24
SH3RF1-203ENST00000508685 MAGI1Q96QZ7 1491 aaPredicted RBP16.56■□□□□ 0.24
SH3RF1-203ENST00000508685 ATP1B4Q9UN42 357 aaPredicted RBP16.54■□□□□ 0.24
SH3RF1-203ENST00000508685 MAP3K1Q13233 1512 aa16.53■□□□□ 0.24
SH3RF1-203ENST00000508685 CHMP7Q8WUX9 453 aaPredicted RBP16.53■□□□□ 0.24
SH3RF1-203ENST00000508685 FYCO1Q9BQS8 1478 aa16.53■□□□□ 0.24
SH3RF1-203ENST00000508685 IQGAP2Q13576 1575 aa16.52■□□□□ 0.24
SH3RF1-203ENST00000508685 FMN1Q68DA7 1419 aa16.51■□□□□ 0.23
SH3RF1-203ENST00000508685 CASKIN1Q8WXD9 1431 aa16.51■□□□□ 0.23
SH3RF1-203ENST00000508685 CHD1O14646 1710 aa16.51■□□□□ 0.23
SH3RF1-203ENST00000508685 CFAP43Q8NDM7 1665 aa16.51■□□□□ 0.23
SH3RF1-203ENST00000508685 LRRC9Q6ZRR7 1453 aa16.51■□□□□ 0.23
SH3RF1-203ENST00000508685 SYNJ2O15056 1496 aa16.5■□□□□ 0.23
SH3RF1-203ENST00000508685 GRIN2AQ12879 1464 aa16.48■□□□□ 0.23
SH3RF1-203ENST00000508685 RRBP1Q9P2E9 1410 aaKnown RBP16.48■□□□□ 0.23
SH3RF1-203ENST00000508685 PELP1Q8IZL8 1130 aaKnown RBP16.48■□□□□ 0.23
SH3RF1-203ENST00000508685 CCNB3Q8WWL7 1395 aa16.43■□□□□ 0.22
SH3RF1-203ENST00000508685 KIAA0586Q9BVV6 1533 aa16.42■□□□□ 0.22
SH3RF1-203ENST00000508685 PHLDB1Q86UU1 1377 aa16.42■□□□□ 0.22
SH3RF1-203ENST00000508685 LRRIQ1Q96JM4 1722 aa16.42■□□□□ 0.22
SH3RF1-203ENST00000508685 UGGT2Q9NYU1 1516 aa16.41■□□□□ 0.22
SH3RF1-203ENST00000508685 CEP170Q5SW79 1584 aa16.39■□□□□ 0.21
SH3RF1-203ENST00000508685 DIEXFQ68CQ4 756 aaKnown RBP16.38■□□□□ 0.21
SH3RF1-203ENST00000508685 DISP1Q96F81 1524 aa16.37■□□□□ 0.21
SH3RF1-203ENST00000508685 KIAA0556O60303 1618 aa16.36■□□□□ 0.21
SH3RF1-203ENST00000508685 SCAF1Q9H7N4 1312 aaKnown RBP16.35■□□□□ 0.21
SH3RF1-203ENST00000508685 ITGAEP38570 1179 aa16.35■□□□□ 0.21
SH3RF1-203ENST00000508685 CLASP1Q7Z460 1538 aa16.35■□□□□ 0.21
SH3RF1-203ENST00000508685 MTUS2Q5JR59 1369 aa16.34■□□□□ 0.21
SH3RF1-203ENST00000508685 CENPBP07199 599 aaPredicted RBP16.33■□□□□ 0.2
SH3RF1-203ENST00000508685 NUP160Q12769 1436 aa16.32■□□□□ 0.2
SH3RF1-203ENST00000508685 ARHGEF11O15085 1522 aa16.32■□□□□ 0.2
SH3RF1-203ENST00000508685 HECW1Q76N89 1606 aa16.32■□□□□ 0.2
SH3RF1-203ENST00000508685 ACIN1Q9UKV3 1341 aaKnown RBP16.32■□□□□ 0.2
SH3RF1-203ENST00000508685 RIMBP3CA6NJZ7 1639 aa16.31■□□□□ 0.2
SH3RF1-203ENST00000508685 RIMBP3BA6NNM3 1639 aa16.31■□□□□ 0.2
SH3RF1-203ENST00000508685 RIMBP3Q9UFD9 1639 aa16.31■□□□□ 0.2
SH3RF1-203ENST00000508685 ZNF316A6NFI3 1004 aaPredicted RBP16.3■□□□□ 0.2
SH3RF1-203ENST00000508685 MAGI3Q5TCQ9 1506 aa16.3■□□□□ 0.2
SH3RF1-203ENST00000508685 CCDC18Q5T9S5 1454 aa16.29■□□□□ 0.2
SH3RF1-203ENST00000508685 ARID3CA6NKF2 412 aa16.29■□□□□ 0.2
SH3RF1-203ENST00000508685 FAM50AQ14320 339 aaKnown RBP16.29■□□□□ 0.2
SH3RF1-203ENST00000508685 EPRSP07814 1512 aaKnown RBP16.29■□□□□ 0.2
SH3RF1-203ENST00000508685 CDK13Q14004 1512 aaKnown RBP16.28■□□□□ 0.2
SH3RF1-203ENST00000508685 EHBP1L1Q8N3D4 1523 aa16.27■□□□□ 0.19
SH3RF1-203ENST00000508685 NCOA2Q15596 1464 aa16.26■□□□□ 0.19
SH3RF1-203ENST00000508685 FGD6Q6ZV73 1430 aa16.24■□□□□ 0.19
SH3RF1-203ENST00000508685 JPH4Q96JJ6 628 aa16.24■□□□□ 0.19
SH3RF1-203ENST00000508685 SUPT6HQ7KZ85 1726 aaKnown RBP16.24■□□□□ 0.19
SH3RF1-203ENST00000508685 NUP153P49790 1475 aaKnown RBP16.22■□□□□ 0.19
SH3RF1-203ENST00000508685 DHX57Q6P158 1386 aaKnown RBP16.22■□□□□ 0.19
SH3RF1-203ENST00000508685 RAPGEF6Q8TEU7 1601 aa16.22■□□□□ 0.19
SH3RF1-203ENST00000508685 CLSPNQ9HAW4 1339 aa16.21■□□□□ 0.19
SH3RF1-203ENST00000508685 CYB5RLQ6IPT4 315 aa16.21■□□□□ 0.19
SH3RF1-203ENST00000508685 MYOM3Q5VTT5 1437 aa16.2■□□□□ 0.18
SH3RF1-203ENST00000508685 PLB1Q6P1J6 1458 aa16.2■□□□□ 0.18
SH3RF1-203ENST00000508685 CARMIL2Q6F5E8 1435 aa16.2■□□□□ 0.18
SH3RF1-203ENST00000508685 RAB3GAP2Q9H2M9 1393 aa16.18■□□□□ 0.18
SH3RF1-203ENST00000508685 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.18■□□□□ 0.18
SH3RF1-203ENST00000508685 SHROOM2Q13796 1616 aa16.17■□□□□ 0.18
SH3RF1-203ENST00000508685 NEUROD1Q13562 356 aa16.17■□□□□ 0.18
SH3RF1-203ENST00000508685 SETD5Q9C0A6 1442 aa16.15■□□□□ 0.18
SH3RF1-203ENST00000508685 PRG4Q92954 1404 aaPredicted RBP16.14■□□□□ 0.17
SH3RF1-203ENST00000508685 ERCC6L2Q5T890 1561 aa16.13■□□□□ 0.17
SH3RF1-203ENST00000508685 PTPN23Q9H3S7 1636 aa16.12■□□□□ 0.17
SH3RF1-203ENST00000508685 PTPRKQ15262 1439 aa16.12■□□□□ 0.17
SH3RF1-203ENST00000508685 ABCA8O94911 1581 aa16.08■□□□□ 0.16
SH3RF1-203ENST00000508685 CDK11AQ9UQ88 783 aaPredicted RBP16.07■□□□□ 0.16
SH3RF1-203ENST00000508685 TCOF1Q13428 1488 aaKnown RBP16.07■□□□□ 0.16
SH3RF1-203ENST00000508685 MAPKBP1O60336 1514 aa16.05■□□□□ 0.16
SH3RF1-203ENST00000508685 TROQ12816 1431 aaPredicted RBP16.04■□□□□ 0.16
SH3RF1-203ENST00000508685 MIA2Q96PC5 1412 aa16.04■□□□□ 0.16
SH3RF1-203ENST00000508685 GTF3C3Q9Y5Q9 886 aa16.04■□□□□ 0.16
SH3RF1-203ENST00000508685 HFM1A2PYH4 1435 aa16.03■□□□□ 0.16
SH3RF1-203ENST00000508685 PTPRGP23470 1445 aa16.03■□□□□ 0.16
SH3RF1-203ENST00000508685 KIF14Q15058 1648 aa16.03■□□□□ 0.16
SH3RF1-203ENST00000508685 ATP10BO94823 1461 aa16.01■□□□□ 0.15
SH3RF1-203ENST00000508685 NAIPQ13075 1403 aa16■□□□□ 0.15
SH3RF1-203ENST00000508685 CHIC2Q9UKJ5 165 aa15.99■□□□□ 0.15
SH3RF1-203ENST00000508685 ZNF644Q9H582 1327 aaPredicted RBP15.99■□□□□ 0.15
SH3RF1-203ENST00000508685 ADCY10Q96PN6 1610 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms