RNA–Protein interactions for RNA: ENST00000504687.5

LMNA-220, Transcript of lamin A/C, humanhuman

TSL 4

Gene LMNA, Length 546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-220ENST00000504687 TRIM26Q12899 539 aaPredicted RBP20.84■□□□□ 0.93
LMNA-220ENST00000504687 SNAPC4Q5SXM2 1469 aa20.82■□□□□ 0.92
LMNA-220ENST00000504687 SAMD9Q5K651 1589 aa20.8■□□□□ 0.92
LMNA-220ENST00000504687 SYNJ2O15056 1496 aa20.79■□□□□ 0.92
LMNA-220ENST00000504687 GRIN2AQ12879 1464 aa20.78■□□□□ 0.92
LMNA-220ENST00000504687 IQGAP2Q13576 1575 aa20.76■□□□□ 0.91
LMNA-220ENST00000504687 MAP3K1Q13233 1512 aa20.75■□□□□ 0.91
LMNA-220ENST00000504687 KIAA0586Q9BVV6 1533 aa20.73■□□□□ 0.91
LMNA-220ENST00000504687 UGGT2Q9NYU1 1516 aa20.72■□□□□ 0.91
LMNA-220ENST00000504687 NUP160Q12769 1436 aa20.68■□□□□ 0.9
LMNA-220ENST00000504687 PCGF6Q9BYE7 350 aa20.66■□□□□ 0.9
LMNA-220ENST00000504687 FMN1Q68DA7 1419 aa20.65■□□□□ 0.9
LMNA-220ENST00000504687 RANGAP1P46060 587 aaPredicted RBP20.64■□□□□ 0.89
LMNA-220ENST00000504687 CEP170Q5SW79 1584 aa20.63■□□□□ 0.89
LMNA-220ENST00000504687 FYCO1Q9BQS8 1478 aa20.63■□□□□ 0.89
LMNA-220ENST00000504687 APLP2Q06481 763 aa20.62■□□□□ 0.89
LMNA-220ENST00000504687 CASKIN1Q8WXD9 1431 aa20.61■□□□□ 0.89
LMNA-220ENST00000504687 PCF11O94913 1555 aaKnown RBP20.6■□□□□ 0.89
LMNA-220ENST00000504687 CFAP43Q8NDM7 1665 aa20.6■□□□□ 0.89
LMNA-220ENST00000504687 FHOD3Q2V2M9 1422 aa20.6■□□□□ 0.89
LMNA-220ENST00000504687 TIAM1Q13009 1591 aa20.59■□□□□ 0.89
LMNA-220ENST00000504687 CHMP7Q8WUX9 453 aaPredicted RBP20.58■□□□□ 0.89
LMNA-220ENST00000504687 KIAA0556O60303 1618 aa20.55■□□□□ 0.88
LMNA-220ENST00000504687 DISP1Q96F81 1524 aa20.53■□□□□ 0.88
LMNA-220ENST00000504687 CHD1O14646 1710 aa20.53■□□□□ 0.88
LMNA-220ENST00000504687 PPARGC1BQ86YN6 1023 aaKnown RBP20.47■□□□□ 0.87
LMNA-220ENST00000504687 LRRC9Q6ZRR7 1453 aa20.47■□□□□ 0.87
LMNA-220ENST00000504687 HECW1Q76N89 1606 aa20.45■□□□□ 0.87
LMNA-220ENST00000504687 P3H3Q8IVL6 736 aa20.45■□□□□ 0.86
LMNA-220ENST00000504687 SHROOM2Q13796 1616 aa20.44■□□□□ 0.86
LMNA-220ENST00000504687 LRRIQ1Q96JM4 1722 aa20.44■□□□□ 0.86
LMNA-220ENST00000504687 CCDC18Q5T9S5 1454 aa20.43■□□□□ 0.86
LMNA-220ENST00000504687 CARMIL2Q6F5E8 1435 aa20.43■□□□□ 0.86
LMNA-220ENST00000504687 KANK4Q5T7N3 995 aaPredicted RBP20.41■□□□□ 0.86
LMNA-220ENST00000504687 FBLN2P98095 1184 aa20.39■□□□□ 0.85
LMNA-220ENST00000504687 JPH4Q96JJ6 628 aa20.39■□□□□ 0.85
LMNA-220ENST00000504687 RRBP1Q9P2E9 1410 aaKnown RBP20.38■□□□□ 0.85
LMNA-220ENST00000504687 CLASP1Q7Z460 1538 aa20.36■□□□□ 0.85
LMNA-220ENST00000504687 RAPGEF6Q8TEU7 1601 aa20.35■□□□□ 0.85
LMNA-220ENST00000504687 OSCARQ8IYS5 282 aa20.33■□□□□ 0.85
LMNA-220ENST00000504687 EPRSP07814 1512 aaKnown RBP20.32■□□□□ 0.84
LMNA-220ENST00000504687 EHBP1L1Q8N3D4 1523 aa20.32■□□□□ 0.84
LMNA-220ENST00000504687 DNAJC5Q9H3Z4 198 aa20.28■□□□□ 0.84
LMNA-220ENST00000504687 ABCA8O94911 1581 aa20.28■□□□□ 0.84
LMNA-220ENST00000504687 NUP153P49790 1475 aaKnown RBP20.27■□□□□ 0.84
LMNA-220ENST00000504687 SUPT6HQ7KZ85 1726 aaKnown RBP20.27■□□□□ 0.83
LMNA-220ENST00000504687 ARHGEF11O15085 1522 aa20.27■□□□□ 0.83
LMNA-220ENST00000504687 TTBK1Q5TCY1 1321 aaPredicted RBP20.27■□□□□ 0.83
LMNA-220ENST00000504687 PRG4Q92954 1404 aaPredicted RBP20.26■□□□□ 0.83
LMNA-220ENST00000504687 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.25■□□□□ 0.83
LMNA-220ENST00000504687 CCNB3Q8WWL7 1395 aa20.23■□□□□ 0.83
LMNA-220ENST00000504687 HRCP23327 699 aa20.23■□□□□ 0.83
LMNA-220ENST00000504687 MTUS2Q5JR59 1369 aa20.22■□□□□ 0.83
LMNA-220ENST00000504687 MAGI3Q5TCQ9 1506 aa20.22■□□□□ 0.83
LMNA-220ENST00000504687 PHLDB1Q86UU1 1377 aa20.21■□□□□ 0.83
LMNA-220ENST00000504687 ATP1B4Q9UN42 357 aaPredicted RBP20.2■□□□□ 0.82
LMNA-220ENST00000504687 CDK13Q14004 1512 aaKnown RBP20.18■□□□□ 0.82
LMNA-220ENST00000504687 NCOA2Q15596 1464 aa20.18■□□□□ 0.82
LMNA-220ENST00000504687 PLB1Q6P1J6 1458 aa20.18■□□□□ 0.82
LMNA-220ENST00000504687 PTPRGP23470 1445 aa20.16■□□□□ 0.82
LMNA-220ENST00000504687 ADCY10Q96PN6 1610 aa20.15■□□□□ 0.82
LMNA-220ENST00000504687 MYOM3Q5VTT5 1437 aa20.12■□□□□ 0.81
LMNA-220ENST00000504687 FGD6Q6ZV73 1430 aa20.12■□□□□ 0.81
LMNA-220ENST00000504687 CDK11AQ9UQ88 783 aaPredicted RBP20.12■□□□□ 0.81
LMNA-220ENST00000504687 ZEB1P37275 1124 aaPredicted RBP20.1■□□□□ 0.81
LMNA-220ENST00000504687 TROQ12816 1431 aaPredicted RBP20.1■□□□□ 0.81
LMNA-220ENST00000504687 ERCC6L2Q5T890 1561 aa20.09■□□□□ 0.81
LMNA-220ENST00000504687 MIA2Q96PC5 1412 aa20.09■□□□□ 0.81
LMNA-220ENST00000504687 UACAQ9BZF9 1416 aa20.09■□□□□ 0.81
LMNA-220ENST00000504687 UHRF1BP1LA0JNW5 1464 aa20.08■□□□□ 0.81
LMNA-220ENST00000504687 ATP10BO94823 1461 aa20.07■□□□□ 0.8
LMNA-220ENST00000504687 TCOF1Q13428 1488 aaKnown RBP20.07■□□□□ 0.8
LMNA-220ENST00000504687 ABCC2Q92887 1545 aa20.07■□□□□ 0.8
LMNA-220ENST00000504687 PTPN23Q9H3S7 1636 aa20.03■□□□□ 0.8
LMNA-220ENST00000504687 RIMBP3CA6NJZ7 1639 aa20.02■□□□□ 0.8
LMNA-220ENST00000504687 RIMBP3BA6NNM3 1639 aa20.02■□□□□ 0.8
LMNA-220ENST00000504687 RIMBP3Q9UFD9 1639 aa20.02■□□□□ 0.8
LMNA-220ENST00000504687 ITSN2Q9NZM3 1697 aa20.02■□□□□ 0.8
LMNA-220ENST00000504687 HNRNPUL2Q1KMD3 747 aaKnown RBP20.01■□□□□ 0.79
LMNA-220ENST00000504687 KIF14Q15058 1648 aa19.98■□□□□ 0.79
LMNA-220ENST00000504687 KDM5BQ9UGL1 1544 aa19.96■□□□□ 0.79
LMNA-220ENST00000504687 ABCC10Q5T3U5 1492 aa19.94■□□□□ 0.78
LMNA-220ENST00000504687 PLEKHD1A6NEE1 506 aa19.93■□□□□ 0.78
LMNA-220ENST00000504687 GPATCH8Q9UKJ3 1502 aaKnown RBP19.91■□□□□ 0.78
LMNA-220ENST00000504687 ZCCHC11Q5TAX3 1644 aaKnown RBP19.91■□□□□ 0.78
LMNA-220ENST00000504687 CDC42BPAQ5VT25 1732 aa19.9■□□□□ 0.78
LMNA-220ENST00000504687 FAM50AQ14320 339 aaKnown RBP19.9■□□□□ 0.78
LMNA-220ENST00000504687 CLSPNQ9HAW4 1339 aa19.9■□□□□ 0.78
LMNA-220ENST00000504687 AKNAQ7Z591 1439 aa19.9■□□□□ 0.78
LMNA-220ENST00000504687 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.89■□□□□ 0.77
LMNA-220ENST00000504687 CCER1Q8TC90 406 aaPredicted RBP19.89■□□□□ 0.77
LMNA-220ENST00000504687 SETD5Q9C0A6 1442 aa19.88■□□□□ 0.77
LMNA-220ENST00000504687 DNMT1P26358 1616 aaKnown RBP19.87■□□□□ 0.77
LMNA-220ENST00000504687 ARID3CA6NKF2 412 aa19.86■□□□□ 0.77
LMNA-220ENST00000504687 HFM1A2PYH4 1435 aa19.85■□□□□ 0.77
LMNA-220ENST00000504687 CYB5RLQ6IPT4 315 aa19.84■□□□□ 0.77
LMNA-220ENST00000504687 PREX2Q70Z35 1606 aa19.84■□□□□ 0.77
LMNA-220ENST00000504687 GCC2Q8IWJ2 1684 aa19.83■□□□□ 0.76
LMNA-220ENST00000504687 PTPRKQ15262 1439 aa19.83■□□□□ 0.76
LMNA-220ENST00000504687 RAB3GAP2Q9H2M9 1393 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms