RNA–Protein interactions for RNA: ENST00000504687.5

LMNA-220, Transcript of lamin A/C, humanhuman

TSL 4

Gene LMNA, Length 546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-220ENST00000504687 NISCHQ9Y2I1 1504 aa30.31■■■□□ 2.44
LMNA-220ENST00000504687 CCDC180Q9P1Z9 1646 aa26.57■■□□□ 1.84
LMNA-220ENST00000504687 ZCCHC6Q5VYS8 1495 aaKnown RBP25.49■■□□□ 1.67
LMNA-220ENST00000504687 DCAF1Q9Y4B6 1507 aa25.24■■□□□ 1.63
LMNA-220ENST00000504687 ABCC9O60706 1549 aa24.96■■□□□ 1.59
LMNA-220ENST00000504687 MYO15BQ96JP2 1530 aa24.96■■□□□ 1.59
LMNA-220ENST00000504687 NACADO15069 1562 aa24.68■■□□□ 1.54
LMNA-220ENST00000504687 DCAF8L2P0C7V8 631 aa24.61■■□□□ 1.53
LMNA-220ENST00000504687 RB1CC1Q8TDY2 1594 aa24.41■■□□□ 1.5
LMNA-220ENST00000504687 SHROOM4Q9ULL8 1493 aa24.37■■□□□ 1.49
LMNA-220ENST00000504687 SCRIBQ14160 1630 aa24.16■■□□□ 1.46
LMNA-220ENST00000504687 UNC13AQ9UPW8 1703 aa23.91■■□□□ 1.42
LMNA-220ENST00000504687 BICRAQ9NZM4 1560 aa23.65■■□□□ 1.38
LMNA-220ENST00000504687 SUPT5HO00267 1087 aaKnown RBP23.48■■□□□ 1.35
LMNA-220ENST00000504687 RSF1Q96T23 1441 aaPredicted RBP23.46■■□□□ 1.35
LMNA-220ENST00000504687 BAZ1AQ9NRL2 1556 aaPredicted RBP23.43■■□□□ 1.34
LMNA-220ENST00000504687 CECR2Q9BXF3 1484 aa23.42■■□□□ 1.34
LMNA-220ENST00000504687 PABPN1Q86U42 306 aaKnown RBP eCLIP23.39■■□□□ 1.33
LMNA-220ENST00000504687 MROH2BQ7Z745 1585 aa23.34■■□□□ 1.33
LMNA-220ENST00000504687 SMARCA4P51532 1647 aa23.3■■□□□ 1.32
LMNA-220ENST00000504687 WIZO95785 1651 aa23.14■■□□□ 1.29
LMNA-220ENST00000504687 PEG3Q9GZU2 1588 aa23.14■■□□□ 1.29
LMNA-220ENST00000504687 TOP2AP11388 1531 aaKnown RBP23■■□□□ 1.27
LMNA-220ENST00000504687 SMARCA2P51531 1590 aa22.93■■□□□ 1.26
LMNA-220ENST00000504687 EIF4G1Q04637 1599 aaKnown RBP22.91■■□□□ 1.26
LMNA-220ENST00000504687 ATAD2BQ9ULI0 1458 aa22.87■■□□□ 1.25
LMNA-220ENST00000504687 DNAJC5BQ9UF47 199 aa22.78■■□□□ 1.24
LMNA-220ENST00000504687 HMGXB3Q12766 1538 aa22.75■■□□□ 1.23
LMNA-220ENST00000504687 NCAPD3P42695 1498 aa22.74■■□□□ 1.23
LMNA-220ENST00000504687 BAZ1BQ9UIG0 1483 aaKnown RBP22.71■■□□□ 1.23
LMNA-220ENST00000504687 CCDC88BA6NC98 1476 aa22.68■■□□□ 1.22
LMNA-220ENST00000504687 CHIC1Q5VXU3 224 aa22.65■■□□□ 1.22
LMNA-220ENST00000504687 CC2D2AQ9P2K1 1620 aa22.6■■□□□ 1.21
LMNA-220ENST00000504687 PRDM2Q13029 1718 aa22.23■■□□□ 1.15
LMNA-220ENST00000504687 CFTRP13569 1480 aa22.22■■□□□ 1.15
LMNA-220ENST00000504687 TRIM41Q8WV44 630 aa22.2■■□□□ 1.14
LMNA-220ENST00000504687 ABCC8Q09428 1581 aa22.13■■□□□ 1.13
LMNA-220ENST00000504687 CADPSQ9ULU8 1353 aa22.08■■□□□ 1.12
LMNA-220ENST00000504687 WRNQ14191 1432 aaPredicted RBP eCLIP22.07■■□□□ 1.125e-6■■■■■ 29.2
LMNA-220ENST00000504687 BIVM-ERCC5R4GMW8 1640 aa22■■□□□ 1.11
LMNA-220ENST00000504687 TOP2BQ02880 1626 aa21.98■■□□□ 1.11
LMNA-220ENST00000504687 SYNJ1O43426 1573 aa21.98■■□□□ 1.11
LMNA-220ENST00000504687 LAMC3Q9Y6N6 1575 aa21.98■■□□□ 1.11
LMNA-220ENST00000504687 EEA1Q15075 1411 aa21.9■■□□□ 1.1
LMNA-220ENST00000504687 CUX1P39880 1505 aa21.84■■□□□ 1.09
LMNA-220ENST00000504687 FANCD2Q9BXW9 1451 aa21.81■■□□□ 1.08
LMNA-220ENST00000504687 NESP48681 1621 aa21.76■■□□□ 1.07
LMNA-220ENST00000504687 PDS5BQ9NTI5 1447 aa21.73■■□□□ 1.07
LMNA-220ENST00000504687 SOGA1O94964 1423 aa21.72■■□□□ 1.07
LMNA-220ENST00000504687 DNMBPQ6XZF7 1577 aa21.7■■□□□ 1.06
LMNA-220ENST00000504687 CEP164Q9UPV0 1460 aa21.7■■□□□ 1.06
LMNA-220ENST00000504687 LOC105371045A0A1W2PR82 267 aa21.64■■□□□ 1.05
LMNA-220ENST00000504687 RUSC2Q8N2Y8 1516 aa21.62■■□□□ 1.05
LMNA-220ENST00000504687 KIF21AQ7Z4S6 1674 aa21.61■■□□□ 1.05
LMNA-220ENST00000504687 FAM9AQ8IZU1 332 aaPredicted RBP21.61■■□□□ 1.05
LMNA-220ENST00000504687 TOPBP1Q92547 1522 aa21.6■■□□□ 1.05
LMNA-220ENST00000504687 KIF21BO75037 1637 aa21.6■■□□□ 1.05
LMNA-220ENST00000504687 CSRNP3Q8WYN3 585 aa21.6■■□□□ 1.05
LMNA-220ENST00000504687 FGD5Q6ZNL6 1462 aa21.58■■□□□ 1.04
LMNA-220ENST00000504687 URB2Q14146 1524 aaKnown RBP21.54■■□□□ 1.04
LMNA-220ENST00000504687 KIF27Q86VH2 1401 aa21.54■■□□□ 1.04
LMNA-220ENST00000504687 POLA1P09884 1462 aaPredicted RBP21.49■■□□□ 1.03
LMNA-220ENST00000504687 GOLGA3Q08378 1498 aa21.49■■□□□ 1.03
LMNA-220ENST00000504687 ABCA10Q8WWZ4 1543 aa21.47■■□□□ 1.03
LMNA-220ENST00000504687 ERICH3Q5RHP9 1530 aa21.46■■□□□ 1.03
LMNA-220ENST00000504687 WDR97A6NE52 1622 aa21.46■■□□□ 1.03
LMNA-220ENST00000504687 MRC2Q9UBG0 1479 aa21.45■■□□□ 1.03
LMNA-220ENST00000504687 TNIKQ9UKE5 1360 aa21.45■■□□□ 1.02
LMNA-220ENST00000504687 ERCC6Q03468 1493 aa21.45■■□□□ 1.02
LMNA-220ENST00000504687 PRXQ9BXM0 1461 aa21.44■■□□□ 1.02
LMNA-220ENST00000504687 CUX2O14529 1486 aa21.4■■□□□ 1.02
LMNA-220ENST00000504687 WDR62O43379 1518 aa21.39■■□□□ 1.02
LMNA-220ENST00000504687 TARBP1Q13395 1621 aaKnown RBP21.34■■□□□ 1.01
LMNA-220ENST00000504687 RAD54L2Q9Y4B4 1467 aa21.32■■□□□ 1
LMNA-220ENST00000504687 ABCA5Q8WWZ7 1642 aa21.32■■□□□ 1
LMNA-220ENST00000504687 RAPGEF2Q9Y4G8 1499 aa21.32■■□□□ 1
LMNA-220ENST00000504687 IGF1RP08069 1367 aa21.31■■□□□ 1
LMNA-220ENST00000504687 THOC2Q8NI27 1593 aaKnown RBP21.3■■□□□ 1
LMNA-220ENST00000504687 CUL7Q14999 1698 aa21.28■■□□□ 1
LMNA-220ENST00000504687 CEP162Q5TB80 1403 aa21.26■□□□□ 0.99
LMNA-220ENST00000504687 IFT140Q96RY7 1462 aa21.21■□□□□ 0.99
LMNA-220ENST00000504687 UBTFP17480 764 aaKnown RBP21.2■□□□□ 0.98
LMNA-220ENST00000504687 CARMIL1Q5VZK9 1371 aa21.19■□□□□ 0.98
LMNA-220ENST00000504687 GAPVD1Q14C86 1478 aa21.18■□□□□ 0.98
LMNA-220ENST00000504687 EHMT2Q96KQ7 1210 aa21.14■□□□□ 0.97
LMNA-220ENST00000504687 PBRM1Q86U86 1689 aa21.12■□□□□ 0.97
LMNA-220ENST00000504687 CLIP1P30622 1438 aa21.09■□□□□ 0.97
LMNA-220ENST00000504687 TDRD9Q8NDG6 1382 aaKnown RBP21.08■□□□□ 0.96
LMNA-220ENST00000504687 GRIN2BQ13224 1484 aa21.04■□□□□ 0.96
LMNA-220ENST00000504687 CTTNBP2Q8WZ74 1663 aa21.02■□□□□ 0.95
LMNA-220ENST00000504687 ADAMTS12P58397 1594 aa21■□□□□ 0.95
LMNA-220ENST00000504687 EIF4G3O43432 1585 aaKnown RBP20.99■□□□□ 0.95
LMNA-220ENST00000504687 FHAD1B1AJZ9 1412 aa20.99■□□□□ 0.95
LMNA-220ENST00000504687 AQRO60306 1485 aaKnown RBP eCLIP20.97■□□□□ 0.959e-18■■■■■ 32.4
LMNA-220ENST00000504687 ZNF608Q9ULD9 1512 aaPredicted RBP20.97■□□□□ 0.95
LMNA-220ENST00000504687 VPS8Q8N3P4 1428 aa20.96■□□□□ 0.95
LMNA-220ENST00000504687 EFCAB5A4FU69 1503 aa20.91■□□□□ 0.94
LMNA-220ENST00000504687 ARAP1Q96P48 1450 aa20.91■□□□□ 0.94
LMNA-220ENST00000504687 MAGI1Q96QZ7 1491 aaPredicted RBP20.91■□□□□ 0.94
LMNA-220ENST00000504687 ARHGAP35Q9NRY4 1499 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms