RNA–Protein interactions for RNA: ENST00000496081.5

HLA-A-208, Transcript of major histocompatibility complex, class I, A, humanhuman

Gene HLA-A, Length 1,786 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-A-208ENST00000496081 CTTNBP2Q8WZ74 1663 aa25.66■■□□□ 1.7
HLA-A-208ENST00000496081 PPARGC1BQ86YN6 1023 aaKnown RBP25.64■■□□□ 1.69
HLA-A-208ENST00000496081 SNAPC4Q5SXM2 1469 aa25.58■■□□□ 1.69
HLA-A-208ENST00000496081 MAGI1Q96QZ7 1491 aaPredicted RBP25.52■■□□□ 1.68
HLA-A-208ENST00000496081 EFCAB5A4FU69 1503 aa25.49■■□□□ 1.67
HLA-A-208ENST00000496081 GRIN2AQ12879 1464 aa25.45■■□□□ 1.66
HLA-A-208ENST00000496081 APLP2Q06481 763 aa25.43■■□□□ 1.66
HLA-A-208ENST00000496081 SYNJ2O15056 1496 aa25.43■■□□□ 1.66
HLA-A-208ENST00000496081 P3H3Q8IVL6 736 aa25.42■■□□□ 1.66
HLA-A-208ENST00000496081 TTBK1Q5TCY1 1321 aaPredicted RBP25.41■■□□□ 1.66
HLA-A-208ENST00000496081 SAMD9Q5K651 1589 aa25.41■■□□□ 1.66
HLA-A-208ENST00000496081 IQGAP2Q13576 1575 aa25.4■■□□□ 1.66
HLA-A-208ENST00000496081 FHOD3Q2V2M9 1422 aa25.39■■□□□ 1.66
HLA-A-208ENST00000496081 CHMP7Q8WUX9 453 aaPredicted RBP25.38■■□□□ 1.65
HLA-A-208ENST00000496081 KIAA0586Q9BVV6 1533 aa25.34■■□□□ 1.65
HLA-A-208ENST00000496081 FBLN2P98095 1184 aa25.31■■□□□ 1.64
HLA-A-208ENST00000496081 CEP170Q5SW79 1584 aa25.29■■□□□ 1.64
HLA-A-208ENST00000496081 PCF11O94913 1555 aaKnown RBP25.28■■□□□ 1.64
HLA-A-208ENST00000496081 UGGT2Q9NYU1 1516 aa25.28■■□□□ 1.64
HLA-A-208ENST00000496081 FMN1Q68DA7 1419 aa25.26■■□□□ 1.63
HLA-A-208ENST00000496081 NUP160Q12769 1436 aa25.25■■□□□ 1.63
HLA-A-208ENST00000496081 KANK4Q5T7N3 995 aaPredicted RBP25.24■■□□□ 1.63
HLA-A-208ENST00000496081 MAP3K1Q13233 1512 aa25.23■■□□□ 1.63
HLA-A-208ENST00000496081 CASKIN1Q8WXD9 1431 aa25.23■■□□□ 1.63
HLA-A-208ENST00000496081 FYCO1Q9BQS8 1478 aa25.22■■□□□ 1.63
HLA-A-208ENST00000496081 TIAM1Q13009 1591 aa25.21■■□□□ 1.63
HLA-A-208ENST00000496081 DISP1Q96F81 1524 aa25.16■■□□□ 1.62
HLA-A-208ENST00000496081 CHD1O14646 1710 aa25.16■■□□□ 1.62
HLA-A-208ENST00000496081 ATP1B4Q9UN42 357 aaPredicted RBP25.15■■□□□ 1.62
HLA-A-208ENST00000496081 CFAP43Q8NDM7 1665 aa25.15■■□□□ 1.62
HLA-A-208ENST00000496081 KIAA0556O60303 1618 aa25.14■■□□□ 1.62
HLA-A-208ENST00000496081 LRRC9Q6ZRR7 1453 aa25.09■■□□□ 1.61
HLA-A-208ENST00000496081 JPH4Q96JJ6 628 aa25.08■■□□□ 1.6
HLA-A-208ENST00000496081 LRRIQ1Q96JM4 1722 aa25.06■■□□□ 1.6
HLA-A-208ENST00000496081 OSCARQ8IYS5 282 aa25.03■■□□□ 1.6
HLA-A-208ENST00000496081 CARMIL2Q6F5E8 1435 aa25■■□□□ 1.59
HLA-A-208ENST00000496081 HECW1Q76N89 1606 aa25■■□□□ 1.59
HLA-A-208ENST00000496081 HRCP23327 699 aa24.98■■□□□ 1.59
HLA-A-208ENST00000496081 CCDC18Q5T9S5 1454 aa24.95■■□□□ 1.58
HLA-A-208ENST00000496081 RRBP1Q9P2E9 1410 aaKnown RBP24.94■■□□□ 1.58
HLA-A-208ENST00000496081 EPRSP07814 1512 aaKnown RBP24.92■■□□□ 1.58
HLA-A-208ENST00000496081 RAPGEF6Q8TEU7 1601 aa24.91■■□□□ 1.58
HLA-A-208ENST00000496081 PRG4Q92954 1404 aaPredicted RBP24.9■■□□□ 1.58
HLA-A-208ENST00000496081 SHROOM2Q13796 1616 aa24.9■■□□□ 1.58
HLA-A-208ENST00000496081 MTUS2Q5JR59 1369 aa24.89■■□□□ 1.58
HLA-A-208ENST00000496081 PHLDB1Q86UU1 1377 aa24.88■■□□□ 1.57
HLA-A-208ENST00000496081 NUP153P49790 1475 aaKnown RBP24.86■■□□□ 1.57
HLA-A-208ENST00000496081 CCNB3Q8WWL7 1395 aa24.86■■□□□ 1.57
HLA-A-208ENST00000496081 CDK13Q14004 1512 aaKnown RBP24.86■■□□□ 1.57
HLA-A-208ENST00000496081 HNRNPUL2Q1KMD3 747 aaKnown RBP24.85■■□□□ 1.57
HLA-A-208ENST00000496081 CLASP1Q7Z460 1538 aa24.85■■□□□ 1.57
HLA-A-208ENST00000496081 MAGI3Q5TCQ9 1506 aa24.84■■□□□ 1.57
HLA-A-208ENST00000496081 EHBP1L1Q8N3D4 1523 aa24.84■■□□□ 1.57
HLA-A-208ENST00000496081 PLB1Q6P1J6 1458 aa24.84■■□□□ 1.57
HLA-A-208ENST00000496081 ARID3CA6NKF2 412 aa24.8■■□□□ 1.56
HLA-A-208ENST00000496081 SUPT6HQ7KZ85 1726 aaKnown RBP24.79■■□□□ 1.56
HLA-A-208ENST00000496081 ABCA8O94911 1581 aa24.78■■□□□ 1.56
HLA-A-208ENST00000496081 NCOA2Q15596 1464 aa24.77■■□□□ 1.56
HLA-A-208ENST00000496081 PTPRGP23470 1445 aa24.76■■□□□ 1.55
HLA-A-208ENST00000496081 ERCC6L2Q5T890 1561 aa24.75■■□□□ 1.55
HLA-A-208ENST00000496081 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.74■■□□□ 1.55
HLA-A-208ENST00000496081 ARHGEF11O15085 1522 aa24.73■■□□□ 1.55
HLA-A-208ENST00000496081 DNAJC5Q9H3Z4 198 aa24.7■■□□□ 1.54
HLA-A-208ENST00000496081 FGD6Q6ZV73 1430 aa24.69■■□□□ 1.54
HLA-A-208ENST00000496081 MYOM3Q5VTT5 1437 aa24.67■■□□□ 1.54
HLA-A-208ENST00000496081 CDK11AQ9UQ88 783 aaPredicted RBP24.67■■□□□ 1.54
HLA-A-208ENST00000496081 FAM50AQ14320 339 aaKnown RBP24.65■■□□□ 1.54
HLA-A-208ENST00000496081 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.65■■□□□ 1.54
HLA-A-208ENST00000496081 CCER1Q8TC90 406 aaPredicted RBP24.64■■□□□ 1.53
HLA-A-208ENST00000496081 ATP10BO94823 1461 aa24.63■■□□□ 1.53
HLA-A-208ENST00000496081 ZEB1P37275 1124 aaPredicted RBP24.62■■□□□ 1.53
HLA-A-208ENST00000496081 ITGAEP38570 1179 aa24.62■■□□□ 1.53
HLA-A-208ENST00000496081 UACAQ9BZF9 1416 aa24.62■■□□□ 1.53
HLA-A-208ENST00000496081 TROQ12816 1431 aaPredicted RBP24.61■■□□□ 1.53
HLA-A-208ENST00000496081 RIMBP3CA6NJZ7 1639 aa24.57■■□□□ 1.52
HLA-A-208ENST00000496081 RIMBP3BA6NNM3 1639 aa24.57■■□□□ 1.52
HLA-A-208ENST00000496081 RIMBP3Q9UFD9 1639 aa24.57■■□□□ 1.52
HLA-A-208ENST00000496081 PTPN23Q9H3S7 1636 aa24.55■■□□□ 1.52
HLA-A-208ENST00000496081 ADCY10Q96PN6 1610 aa24.54■■□□□ 1.52
HLA-A-208ENST00000496081 ABCC2Q92887 1545 aa24.54■■□□□ 1.52
HLA-A-208ENST00000496081 PLEKHD1A6NEE1 506 aa24.53■■□□□ 1.52
HLA-A-208ENST00000496081 MIA2Q96PC5 1412 aa24.53■■□□□ 1.52
HLA-A-208ENST00000496081 TCOF1Q13428 1488 aaKnown RBP24.51■■□□□ 1.51
HLA-A-208ENST00000496081 KIF14Q15058 1648 aa24.51■■□□□ 1.51
HLA-A-208ENST00000496081 UHRF1BP1LA0JNW5 1464 aa24.47■■□□□ 1.51
HLA-A-208ENST00000496081 CYB5RLQ6IPT4 315 aa24.44■■□□□ 1.5
HLA-A-208ENST00000496081 PTPRKQ15262 1439 aa24.44■■□□□ 1.5
HLA-A-208ENST00000496081 SETD5Q9C0A6 1442 aa24.42■■□□□ 1.5
HLA-A-208ENST00000496081 GPATCH8Q9UKJ3 1502 aaKnown RBP24.42■■□□□ 1.5
HLA-A-208ENST00000496081 ITSN2Q9NZM3 1697 aa24.41■■□□□ 1.5
HLA-A-208ENST00000496081 ABCC10Q5T3U5 1492 aa24.41■■□□□ 1.5
HLA-A-208ENST00000496081 RAB3GAP2Q9H2M9 1393 aa24.4■■□□□ 1.5
HLA-A-208ENST00000496081 KDM5BQ9UGL1 1544 aa24.39■■□□□ 1.49
HLA-A-208ENST00000496081 ZCCHC11Q5TAX3 1644 aaKnown RBP24.38■■□□□ 1.49
HLA-A-208ENST00000496081 DHX57Q6P158 1386 aaKnown RBP24.36■■□□□ 1.49
HLA-A-208ENST00000496081 CDC42BPAQ5VT25 1732 aa24.35■■□□□ 1.49
HLA-A-208ENST00000496081 CFDP1Q9UEE9 299 aaPredicted RBP24.35■■□□□ 1.49
HLA-A-208ENST00000496081 ZNF644Q9H582 1327 aaPredicted RBP24.34■■□□□ 1.49
HLA-A-208ENST00000496081 HFM1A2PYH4 1435 aa24.31■■□□□ 1.48
HLA-A-208ENST00000496081 CAMSAP2Q08AD1 1489 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms