RNA–Protein interactions for RNA: ENST00000496081.5

HLA-A-208, Transcript of major histocompatibility complex, class I, A, humanhuman

Gene HLA-A, Length 1,786 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-A-208ENST00000496081 NISCHQ9Y2I1 1504 aa37.06■■■■□ 3.52
HLA-A-208ENST00000496081 CCDC180Q9P1Z9 1646 aa32.27■■■□□ 2.76
HLA-A-208ENST00000496081 ZCCHC6Q5VYS8 1495 aaKnown RBP31.14■■■□□ 2.58
HLA-A-208ENST00000496081 ABCC9O60706 1549 aa30.79■■■□□ 2.52
HLA-A-208ENST00000496081 DCAF1Q9Y4B6 1507 aa30.62■■■□□ 2.49
HLA-A-208ENST00000496081 DCAF8L2P0C7V8 631 aa30.62■■■□□ 2.49
HLA-A-208ENST00000496081 SHROOM4Q9ULL8 1493 aa30.29■■■□□ 2.44
HLA-A-208ENST00000496081 MYO15BQ96JP2 1530 aa30.24■■■□□ 2.43
HLA-A-208ENST00000496081 NACADO15069 1562 aa30.05■■■□□ 2.4
HLA-A-208ENST00000496081 RB1CC1Q8TDY2 1594 aa29.78■■■□□ 2.36
HLA-A-208ENST00000496081 SCRIBQ14160 1630 aa29.71■■■□□ 2.35
HLA-A-208ENST00000496081 UNC13AQ9UPW8 1703 aa29.23■■■□□ 2.27
HLA-A-208ENST00000496081 SUPT5HO00267 1087 aaKnown RBP29.17■■■□□ 2.26
HLA-A-208ENST00000496081 BICRAQ9NZM4 1560 aa28.92■■■□□ 2.22
HLA-A-208ENST00000496081 PABPN1Q86U42 306 aaKnown RBP eCLIP28.9■■■□□ 2.22
HLA-A-208ENST00000496081 CECR2Q9BXF3 1484 aa28.83■■■□□ 2.21
HLA-A-208ENST00000496081 RSF1Q96T23 1441 aaPredicted RBP28.78■■■□□ 2.2
HLA-A-208ENST00000496081 MROH2BQ7Z745 1585 aa28.66■■■□□ 2.18
HLA-A-208ENST00000496081 BAZ1AQ9NRL2 1556 aaPredicted RBP28.6■■■□□ 2.17
HLA-A-208ENST00000496081 SMARCA4P51532 1647 aa28.48■■■□□ 2.15
HLA-A-208ENST00000496081 WIZO95785 1651 aa28.43■■■□□ 2.14
HLA-A-208ENST00000496081 PEG3Q9GZU2 1588 aa28.13■■■□□ 2.09
HLA-A-208ENST00000496081 TOP2AP11388 1531 aaKnown RBP28.1■■■□□ 2.09
HLA-A-208ENST00000496081 EIF4G1Q04637 1599 aaKnown RBP28.03■■■□□ 2.08
HLA-A-208ENST00000496081 ATAD2BQ9ULI0 1458 aa28■■■□□ 2.07
HLA-A-208ENST00000496081 SMARCA2P51531 1590 aa27.96■■■□□ 2.07
HLA-A-208ENST00000496081 CHIC1Q5VXU3 224 aa27.95■■■□□ 2.06
HLA-A-208ENST00000496081 DNAJC5BQ9UF47 199 aa27.9■■■□□ 2.06
HLA-A-208ENST00000496081 CCDC88BA6NC98 1476 aa27.84■■■□□ 2.05
HLA-A-208ENST00000496081 BAZ1BQ9UIG0 1483 aaKnown RBP27.84■■■□□ 2.05
HLA-A-208ENST00000496081 CC2D2AQ9P2K1 1620 aa27.81■■■□□ 2.04
HLA-A-208ENST00000496081 NCAPD3P42695 1498 aa27.75■■■□□ 2.03
HLA-A-208ENST00000496081 HMGXB3Q12766 1538 aa27.7■■■□□ 2.02
HLA-A-208ENST00000496081 TRIM41Q8WV44 630 aa27.4■■□□□ 1.98
HLA-A-208ENST00000496081 ABCC8Q09428 1581 aa27.28■■□□□ 1.96
HLA-A-208ENST00000496081 CFTRP13569 1480 aa27.15■■□□□ 1.94
HLA-A-208ENST00000496081 WRNQ14191 1432 aaPredicted RBP eCLIP27.08■■□□□ 1.93
HLA-A-208ENST00000496081 CADPSQ9ULU8 1353 aa27.04■■□□□ 1.92
HLA-A-208ENST00000496081 PRDM2Q13029 1718 aa27■■□□□ 1.91
HLA-A-208ENST00000496081 SYNJ1O43426 1573 aa26.98■■□□□ 1.91
HLA-A-208ENST00000496081 FAM9AQ8IZU1 332 aaPredicted RBP26.93■■□□□ 1.9
HLA-A-208ENST00000496081 LOC105371045A0A1W2PR82 267 aa26.9■■□□□ 1.9
HLA-A-208ENST00000496081 TOP2BQ02880 1626 aa26.85■■□□□ 1.89
HLA-A-208ENST00000496081 NESP48681 1621 aa26.82■■□□□ 1.88
HLA-A-208ENST00000496081 BIVM-ERCC5R4GMW8 1640 aa26.82■■□□□ 1.88
HLA-A-208ENST00000496081 LAMC3Q9Y6N6 1575 aa26.79■■□□□ 1.88
HLA-A-208ENST00000496081 SOGA1O94964 1423 aa26.78■■□□□ 1.88
HLA-A-208ENST00000496081 CUX1P39880 1505 aa26.78■■□□□ 1.88
HLA-A-208ENST00000496081 FANCD2Q9BXW9 1451 aa26.75■■□□□ 1.87
HLA-A-208ENST00000496081 RUSC2Q8N2Y8 1516 aa26.69■■□□□ 1.86
HLA-A-208ENST00000496081 EEA1Q15075 1411 aa26.68■■□□□ 1.86
HLA-A-208ENST00000496081 PDS5BQ9NTI5 1447 aa26.58■■□□□ 1.84
HLA-A-208ENST00000496081 CSRNP3Q8WYN3 585 aa26.57■■□□□ 1.84
HLA-A-208ENST00000496081 CEP164Q9UPV0 1460 aa26.56■■□□□ 1.84
HLA-A-208ENST00000496081 EHMT2Q96KQ7 1210 aa26.56■■□□□ 1.84
HLA-A-208ENST00000496081 DNMBPQ6XZF7 1577 aa26.5■■□□□ 1.83
HLA-A-208ENST00000496081 KIF21AQ7Z4S6 1674 aa26.49■■□□□ 1.83
HLA-A-208ENST00000496081 FGD5Q6ZNL6 1462 aa26.48■■□□□ 1.83
HLA-A-208ENST00000496081 TOPBP1Q92547 1522 aa26.47■■□□□ 1.83
HLA-A-208ENST00000496081 ERCC6Q03468 1493 aa26.46■■□□□ 1.83
HLA-A-208ENST00000496081 URB2Q14146 1524 aaKnown RBP26.42■■□□□ 1.82
HLA-A-208ENST00000496081 KIF27Q86VH2 1401 aa26.38■■□□□ 1.81
HLA-A-208ENST00000496081 KIF21BO75037 1637 aa26.35■■□□□ 1.81
HLA-A-208ENST00000496081 POLA1P09884 1462 aaPredicted RBP26.35■■□□□ 1.81
HLA-A-208ENST00000496081 GOLGA3Q08378 1498 aa26.33■■□□□ 1.81
HLA-A-208ENST00000496081 CUX2O14529 1486 aa26.31■■□□□ 1.8
HLA-A-208ENST00000496081 RAD54L2Q9Y4B4 1467 aa26.27■■□□□ 1.8
HLA-A-208ENST00000496081 TNIKQ9UKE5 1360 aa26.27■■□□□ 1.8
HLA-A-208ENST00000496081 MRC2Q9UBG0 1479 aa26.24■■□□□ 1.79
HLA-A-208ENST00000496081 ABCA10Q8WWZ4 1543 aa26.24■■□□□ 1.79
HLA-A-208ENST00000496081 UBTFP17480 764 aaKnown RBP26.23■■□□□ 1.79
HLA-A-208ENST00000496081 PRXQ9BXM0 1461 aa26.23■■□□□ 1.79
HLA-A-208ENST00000496081 RAPGEF2Q9Y4G8 1499 aa26.22■■□□□ 1.79
HLA-A-208ENST00000496081 THOC2Q8NI27 1593 aaKnown RBP26.18■■□□□ 1.78
HLA-A-208ENST00000496081 ERICH3Q5RHP9 1530 aa26.17■■□□□ 1.78
HLA-A-208ENST00000496081 IGF1RP08069 1367 aa26.16■■□□□ 1.78
HLA-A-208ENST00000496081 WDR97A6NE52 1622 aa26.15■■□□□ 1.78
HLA-A-208ENST00000496081 CEP162Q5TB80 1403 aa26.14■■□□□ 1.77
HLA-A-208ENST00000496081 WDR62O43379 1518 aa26.1■■□□□ 1.77
HLA-A-208ENST00000496081 TARBP1Q13395 1621 aaKnown RBP26.08■■□□□ 1.77
HLA-A-208ENST00000496081 ABCA5Q8WWZ7 1642 aa26.03■■□□□ 1.76
HLA-A-208ENST00000496081 CARMIL1Q5VZK9 1371 aa26.02■■□□□ 1.76
HLA-A-208ENST00000496081 TDRD9Q8NDG6 1382 aaKnown RBP26.02■■□□□ 1.76
HLA-A-208ENST00000496081 GAPVD1Q14C86 1478 aa25.96■■□□□ 1.75
HLA-A-208ENST00000496081 CUL7Q14999 1698 aa25.93■■□□□ 1.74
HLA-A-208ENST00000496081 CLIP1P30622 1438 aa25.93■■□□□ 1.74
HLA-A-208ENST00000496081 IFT140Q96RY7 1462 aa25.92■■□□□ 1.74
HLA-A-208ENST00000496081 AQRO60306 1485 aaKnown RBP eCLIP25.84■■□□□ 1.73
HLA-A-208ENST00000496081 RANGAP1P46060 587 aaPredicted RBP25.82■■□□□ 1.72
HLA-A-208ENST00000496081 PBRM1Q86U86 1689 aa25.81■■□□□ 1.72
HLA-A-208ENST00000496081 ZNF608Q9ULD9 1512 aaPredicted RBP25.81■■□□□ 1.72
HLA-A-208ENST00000496081 GRIN2BQ13224 1484 aa25.75■■□□□ 1.71
HLA-A-208ENST00000496081 EIF4G3O43432 1585 aaKnown RBP25.71■■□□□ 1.71
HLA-A-208ENST00000496081 VPS8Q8N3P4 1428 aa25.7■■□□□ 1.7
HLA-A-208ENST00000496081 PCGF6Q9BYE7 350 aa25.69■■□□□ 1.7
HLA-A-208ENST00000496081 FHAD1B1AJZ9 1412 aa25.68■■□□□ 1.7
HLA-A-208ENST00000496081 ARAP1Q96P48 1450 aa25.67■■□□□ 1.7
HLA-A-208ENST00000496081 ADAMTS12P58397 1594 aa25.67■■□□□ 1.7
HLA-A-208ENST00000496081 ARHGAP35Q9NRY4 1499 aa25.67■■□□□ 1.7
HLA-A-208ENST00000496081 TRIM26Q12899 539 aaPredicted RBP25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms