RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 TRHP20396 242 aaPredicted RBP22.39■■□□□ 1.17
MSH6-208ENST00000493177 CARMIL1Q5VZK9 1371 aa22.38■■□□□ 1.17
MSH6-208ENST00000493177 PRG4Q92954 1404 aaPredicted RBP22.37■■□□□ 1.17
MSH6-208ENST00000493177 JPH4Q96JJ6 628 aa22.36■■□□□ 1.17
MSH6-208ENST00000493177 KIAA0586Q9BVV6 1533 aa22.32■■□□□ 1.16
MSH6-208ENST00000493177 RAPGEF2Q9Y4G8 1499 aa22.25■■□□□ 1.15
MSH6-208ENST00000493177 IQGAP2Q13576 1575 aa22.23■■□□□ 1.15
MSH6-208ENST00000493177 FAM9AQ8IZU1 332 aaPredicted RBP22.18■■□□□ 1.14
MSH6-208ENST00000493177 CTTNBP2Q8WZ74 1663 aa22.17■■□□□ 1.14
MSH6-208ENST00000493177 CARMIL2Q6F5E8 1435 aa22.16■■□□□ 1.14
MSH6-208ENST00000493177 TTBK1Q5TCY1 1321 aaPredicted RBP22.16■■□□□ 1.14
MSH6-208ENST00000493177 NPM1P06748 294 aaKnown RBP eCLIP22.12■■□□□ 1.13
MSH6-208ENST00000493177 EEA1Q15075 1411 aa22.11■■□□□ 1.13
MSH6-208ENST00000493177 ADCY10Q96PN6 1610 aa22.08■■□□□ 1.13
MSH6-208ENST00000493177 PTPRGP23470 1445 aa22.07■■□□□ 1.12
MSH6-208ENST00000493177 TNIKQ9UKE5 1360 aa22.06■■□□□ 1.12
MSH6-208ENST00000493177 CSRNP3Q8WYN3 585 aa22.04■■□□□ 1.12
MSH6-208ENST00000493177 PRXQ9BXM0 1461 aa22.03■■□□□ 1.12
MSH6-208ENST00000493177 UGGT2Q9NYU1 1516 aa22.03■■□□□ 1.12
MSH6-208ENST00000493177 KIAA0556O60303 1618 aa22.02■■□□□ 1.12
MSH6-208ENST00000493177 KIF13AQ9H1H9 1805 aa22.01■■□□□ 1.11
MSH6-208ENST00000493177 DISP1Q96F81 1524 aa22.01■■□□□ 1.11
MSH6-208ENST00000493177 MAPKBP1O60336 1514 aa21.96■■□□□ 1.11
MSH6-208ENST00000493177 GOLGA3Q08378 1498 aa21.96■■□□□ 1.11
MSH6-208ENST00000493177 UACAQ9BZF9 1416 aa21.9■■□□□ 1.1
MSH6-208ENST00000493177 EHMT2Q96KQ7 1210 aa21.9■■□□□ 1.1
MSH6-208ENST00000493177 ABCC2Q92887 1545 aa21.9■■□□□ 1.1
MSH6-208ENST00000493177 FAM69CQ0P6D2 419 aa21.89■■□□□ 1.09
MSH6-208ENST00000493177 DIP2BQ9P265 1576 aa21.88■■□□□ 1.09
MSH6-208ENST00000493177 ABCC10Q5T3U5 1492 aa21.88■■□□□ 1.09
MSH6-208ENST00000493177 UHRF1BP1LA0JNW5 1464 aa21.87■■□□□ 1.09
MSH6-208ENST00000493177 TSPOAP1O95153 1857 aa21.86■■□□□ 1.09
MSH6-208ENST00000493177 KIF21BO75037 1637 aa21.83■■□□□ 1.08
MSH6-208ENST00000493177 ZCCHC11Q5TAX3 1644 aaKnown RBP21.82■■□□□ 1.08
MSH6-208ENST00000493177 RANGAP1P46060 587 aaPredicted RBP21.81■■□□□ 1.08
MSH6-208ENST00000493177 P3H3Q8IVL6 736 aa21.8■■□□□ 1.08
MSH6-208ENST00000493177 ASXL2Q76L83 1435 aa21.8■■□□□ 1.08
MSH6-208ENST00000493177 PLB1Q6P1J6 1458 aa21.78■■□□□ 1.08
MSH6-208ENST00000493177 KDM5BQ9UGL1 1544 aa21.76■■□□□ 1.07
MSH6-208ENST00000493177 SAMD9Q5K651 1589 aa21.75■■□□□ 1.07
MSH6-208ENST00000493177 LOC105371045A0A1W2PR82 267 aa21.75■■□□□ 1.07
MSH6-208ENST00000493177 UBTFP17480 764 aaKnown RBP21.75■■□□□ 1.07
MSH6-208ENST00000493177 ABCA8O94911 1581 aa21.74■■□□□ 1.07
MSH6-208ENST00000493177 GLI2P10070 1586 aa21.68■■□□□ 1.06
MSH6-208ENST00000493177 KDM6BO15054 1643 aa21.66■■□□□ 1.06
MSH6-208ENST00000493177 RAPGEF6Q8TEU7 1601 aa21.66■■□□□ 1.06
MSH6-208ENST00000493177 WDR7Q9Y4E6 1490 aa21.65■■□□□ 1.06
MSH6-208ENST00000493177 ARID3CA6NKF2 412 aa21.65■■□□□ 1.06
MSH6-208ENST00000493177 EPRSP07814 1512 aaKnown RBP21.65■■□□□ 1.06
MSH6-208ENST00000493177 EFCAB5A4FU69 1503 aa21.64■■□□□ 1.05
MSH6-208ENST00000493177 FHOD3Q2V2M9 1422 aa21.63■■□□□ 1.05
MSH6-208ENST00000493177 MAP3K4Q9Y6R4 1608 aa21.62■■□□□ 1.05
MSH6-208ENST00000493177 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.61■■□□□ 1.05
MSH6-208ENST00000493177 HNRNPUL2Q1KMD3 747 aaKnown RBP21.61■■□□□ 1.05
MSH6-208ENST00000493177 PPRC1Q5VV67 1664 aaKnown RBP21.6■■□□□ 1.05
MSH6-208ENST00000493177 KCNH8Q96L42 1107 aa21.59■■□□□ 1.05
MSH6-208ENST00000493177 CFAP43Q8NDM7 1665 aa21.56■■□□□ 1.04
MSH6-208ENST00000493177 TEX14Q8IWB6 1497 aa21.56■■□□□ 1.04
MSH6-208ENST00000493177 ATP10BO94823 1461 aa21.53■■□□□ 1.04
MSH6-208ENST00000493177 AEBP2Q6ZN18 517 aaPredicted RBP21.49■■□□□ 1.03
MSH6-208ENST00000493177 CD109Q6YHK3 1445 aa21.48■■□□□ 1.03
MSH6-208ENST00000493177 NUP153P49790 1475 aaKnown RBP21.48■■□□□ 1.03
MSH6-208ENST00000493177 ATP1B4Q9UN42 357 aaPredicted RBP21.46■■□□□ 1.03
MSH6-208ENST00000493177 CEP162Q5TB80 1403 aa21.44■■□□□ 1.02
MSH6-208ENST00000493177 FMN1Q68DA7 1419 aa21.44■■□□□ 1.02
MSH6-208ENST00000493177 ARHGAP35Q9NRY4 1499 aa21.44■■□□□ 1.02
MSH6-208ENST00000493177 HECW1Q76N89 1606 aa21.43■■□□□ 1.02
MSH6-208ENST00000493177 MAGI3Q5TCQ9 1506 aa21.41■■□□□ 1.02
MSH6-208ENST00000493177 CLIP1P30622 1438 aa21.41■■□□□ 1.02
MSH6-208ENST00000493177 ABCA9Q8IUA7 1624 aa21.4■■□□□ 1.02
MSH6-208ENST00000493177 PLEKHD1A6NEE1 506 aa21.4■■□□□ 1.02
MSH6-208ENST00000493177 CDK13Q14004 1512 aaKnown RBP21.37■■□□□ 1.01
MSH6-208ENST00000493177 COL17A1Q9UMD9 1497 aaPredicted RBP21.32■■□□□ 1
MSH6-208ENST00000493177 CDK11AQ9UQ88 783 aaPredicted RBP21.29■■□□□ 1
MSH6-208ENST00000493177 PCF11O94913 1555 aaKnown RBP21.27■■□□□ 1
MSH6-208ENST00000493177 LRRIQ1Q96JM4 1722 aa21.26■□□□□ 0.99
MSH6-208ENST00000493177 CFAP74Q9C0B2 1584 aa21.26■□□□□ 0.99
MSH6-208ENST00000493177 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.25■□□□□ 0.999e-9■■■■■ 31
MSH6-208ENST00000493177 TTC37Q6PGP7 1564 aa21.25■□□□□ 0.99
MSH6-208ENST00000493177 NEO1Q92859 1461 aa21.25■□□□□ 0.99
MSH6-208ENST00000493177 PHLDB1Q86UU1 1377 aa21.23■□□□□ 0.99
MSH6-208ENST00000493177 ARAP3Q8WWN8 1544 aa21.23■□□□□ 0.99
MSH6-208ENST00000493177 KIF14Q15058 1648 aa21.22■□□□□ 0.99
MSH6-208ENST00000493177 MYO5CQ9NQX4 1742 aa21.21■□□□□ 0.99
MSH6-208ENST00000493177 CASKIN1Q8WXD9 1431 aa21.21■□□□□ 0.99
MSH6-208ENST00000493177 CCDC18Q5T9S5 1454 aa21.2■□□□□ 0.98
MSH6-208ENST00000493177 FANCAO15360 1455 aa21.19■□□□□ 0.98
MSH6-208ENST00000493177 FYCO1Q9BQS8 1478 aa21.17■□□□□ 0.98
MSH6-208ENST00000493177 ADGRL1O94910 1474 aa21.15■□□□□ 0.98
MSH6-208ENST00000493177 TROQ12816 1431 aaPredicted RBP21.15■□□□□ 0.98
MSH6-208ENST00000493177 AKNAQ7Z591 1439 aa21.14■□□□□ 0.98
MSH6-208ENST00000493177 KDM4FA0A1W2PPD8 638 aa21.14■□□□□ 0.97
MSH6-208ENST00000493177 VPS8Q8N3P4 1428 aa21.13■□□□□ 0.97
MSH6-208ENST00000493177 RAPGEF3O95398 923 aa21.13■□□□□ 0.97
MSH6-208ENST00000493177 DENND4BO75064 1496 aaPredicted RBP21.12■□□□□ 0.97
MSH6-208ENST00000493177 RICTORQ6R327 1708 aa21.11■□□□□ 0.97
MSH6-208ENST00000493177 PLCH2O75038 1416 aa21.1■□□□□ 0.97
MSH6-208ENST00000493177 FRMPD1Q5SYB0 1578 aa21.1■□□□□ 0.97
MSH6-208ENST00000493177 ARHGAP5Q13017 1502 aa21.09■□□□□ 0.97
MSH6-208ENST00000493177 EFCAB2Q5VUJ9 269 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms