RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 NISCHQ9Y2I1 1504 aa32.16■■■□□ 2.74
MSH6-208ENST00000493177 CCDC180Q9P1Z9 1646 aa28.78■■■□□ 2.2
MSH6-208ENST00000493177 ABCC9O60706 1549 aa28.37■■■□□ 2.13
MSH6-208ENST00000493177 RB1CC1Q8TDY2 1594 aa27.21■■□□□ 1.95
MSH6-208ENST00000493177 DCAF8L2P0C7V8 631 aa27.12■■□□□ 1.93
MSH6-208ENST00000493177 NACADO15069 1562 aa27.07■■□□□ 1.92
MSH6-208ENST00000493177 MYO15BQ96JP2 1530 aa26.74■■□□□ 1.87
MSH6-208ENST00000493177 ZCCHC6Q5VYS8 1495 aaKnown RBP26.74■■□□□ 1.87
MSH6-208ENST00000493177 UNC13AQ9UPW8 1703 aa26.64■■□□□ 1.85
MSH6-208ENST00000493177 DCAF1Q9Y4B6 1507 aa26.56■■□□□ 1.84
MSH6-208ENST00000493177 PABPN1Q86U42 306 aaKnown RBP eCLIP26.44■■□□□ 1.82
MSH6-208ENST00000493177 BICRAQ9NZM4 1560 aa26.29■■□□□ 1.8
MSH6-208ENST00000493177 SCRIBQ14160 1630 aa26.28■■□□□ 1.8
MSH6-208ENST00000493177 DNAJC5BQ9UF47 199 aa26.1■■□□□ 1.77
MSH6-208ENST00000493177 SHROOM4Q9ULL8 1493 aa26.01■■□□□ 1.75
MSH6-208ENST00000493177 EIF4G1Q04637 1599 aaKnown RBP25.68■■□□□ 1.7
MSH6-208ENST00000493177 CC2D2AQ9P2K1 1620 aa25.66■■□□□ 1.7
MSH6-208ENST00000493177 CECR2Q9BXF3 1484 aa25.5■■□□□ 1.67
MSH6-208ENST00000493177 SMARCA4P51532 1647 aa25.06■■□□□ 1.6
MSH6-208ENST00000493177 BAZ1AQ9NRL2 1556 aaPredicted RBP25■■□□□ 1.59
MSH6-208ENST00000493177 SMARCA2P51531 1590 aa24.94■■□□□ 1.58
MSH6-208ENST00000493177 ATAD2BQ9ULI0 1458 aa24.91■■□□□ 1.58
MSH6-208ENST00000493177 NCAPD3P42695 1498 aa24.9■■□□□ 1.58
MSH6-208ENST00000493177 HMGXB3Q12766 1538 aa24.83■■□□□ 1.57
MSH6-208ENST00000493177 MROH2BQ7Z745 1585 aa24.79■■□□□ 1.56
MSH6-208ENST00000493177 BAZ1BQ9UIG0 1483 aaKnown RBP24.78■■□□□ 1.56
MSH6-208ENST00000493177 PEG3Q9GZU2 1588 aa24.74■■□□□ 1.55
MSH6-208ENST00000493177 WIZO95785 1651 aa24.59■■□□□ 1.53
MSH6-208ENST00000493177 ERCC6Q03468 1493 aa24.54■■□□□ 1.52
MSH6-208ENST00000493177 NESP48681 1621 aa24.45■■□□□ 1.5
MSH6-208ENST00000493177 LAMC3Q9Y6N6 1575 aa24.39■■□□□ 1.5
MSH6-208ENST00000493177 RSF1Q96T23 1441 aaPredicted RBP24.38■■□□□ 1.49
MSH6-208ENST00000493177 CUX2O14529 1486 aa24.27■■□□□ 1.48
MSH6-208ENST00000493177 TOP2AP11388 1531 aaKnown RBP24.27■■□□□ 1.48
MSH6-208ENST00000493177 KIF21AQ7Z4S6 1674 aa24.25■■□□□ 1.47
MSH6-208ENST00000493177 PDS5BQ9NTI5 1447 aa24.22■■□□□ 1.47
MSH6-208ENST00000493177 CADPSQ9ULU8 1353 aa24.2■■□□□ 1.46
MSH6-208ENST00000493177 THOC2Q8NI27 1593 aaKnown RBP24.15■■□□□ 1.46
MSH6-208ENST00000493177 CFTRP13569 1480 aa24■■□□□ 1.43
MSH6-208ENST00000493177 CEP164Q9UPV0 1460 aa24■■□□□ 1.43
MSH6-208ENST00000493177 SUPT5HO00267 1087 aaKnown RBP23.99■■□□□ 1.43
MSH6-208ENST00000493177 MRC2Q9UBG0 1479 aa23.99■■□□□ 1.43
MSH6-208ENST00000493177 PRDM2Q13029 1718 aa23.98■■□□□ 1.43
MSH6-208ENST00000493177 FANCD2Q9BXW9 1451 aa23.97■■□□□ 1.43
MSH6-208ENST00000493177 CCDC88BA6NC98 1476 aa23.94■■□□□ 1.42
MSH6-208ENST00000493177 WDR62O43379 1518 aa23.89■■□□□ 1.42
MSH6-208ENST00000493177 DNAJC5Q9H3Z4 198 aa23.73■■□□□ 1.39
MSH6-208ENST00000493177 URB2Q14146 1524 aaKnown RBP23.71■■□□□ 1.39
MSH6-208ENST00000493177 ABCC8Q09428 1581 aa23.56■■□□□ 1.36
MSH6-208ENST00000493177 TOPBP1Q92547 1522 aa23.55■■□□□ 1.36
MSH6-208ENST00000493177 DNMBPQ6XZF7 1577 aa23.54■■□□□ 1.36
MSH6-208ENST00000493177 IFT140Q96RY7 1462 aa23.47■■□□□ 1.35
MSH6-208ENST00000493177 ZNF608Q9ULD9 1512 aaPredicted RBP23.36■■□□□ 1.33
MSH6-208ENST00000493177 EIF4G3O43432 1585 aaKnown RBP23.34■■□□□ 1.33
MSH6-208ENST00000493177 POLA1P09884 1462 aaPredicted RBP23.33■■□□□ 1.33
MSH6-208ENST00000493177 TARBP1Q13395 1621 aaKnown RBP23.3■■□□□ 1.32
MSH6-208ENST00000493177 CUX1P39880 1505 aa23.28■■□□□ 1.32
MSH6-208ENST00000493177 FGD5Q6ZNL6 1462 aa23.27■■□□□ 1.32
MSH6-208ENST00000493177 RAD54L2Q9Y4B4 1467 aa23.24■■□□□ 1.31
MSH6-208ENST00000493177 SOGA1O94964 1423 aa23.24■■□□□ 1.31
MSH6-208ENST00000493177 OSCARQ8IYS5 282 aa23.23■■□□□ 1.31
MSH6-208ENST00000493177 AQRO60306 1485 aaKnown RBP eCLIP23.21■■□□□ 1.31
MSH6-208ENST00000493177 WDR97A6NE52 1622 aa23.15■■□□□ 1.3
MSH6-208ENST00000493177 CHD1O14646 1710 aa23.14■■□□□ 1.3
MSH6-208ENST00000493177 TDRD9Q8NDG6 1382 aaKnown RBP23.14■■□□□ 1.29
MSH6-208ENST00000493177 FBLN2P98095 1184 aa23.09■■□□□ 1.29
MSH6-208ENST00000493177 BIVM-ERCC5R4GMW8 1640 aa23.07■■□□□ 1.28
MSH6-208ENST00000493177 WRNQ14191 1432 aaPredicted RBP eCLIP23.07■■□□□ 1.28
MSH6-208ENST00000493177 PBRM1Q86U86 1689 aa23.06■■□□□ 1.28
MSH6-208ENST00000493177 TOP2BQ02880 1626 aa23.05■■□□□ 1.28
MSH6-208ENST00000493177 SYNJ1O43426 1573 aa23.03■■□□□ 1.28
MSH6-208ENST00000493177 SNAPC4Q5SXM2 1469 aa23.03■■□□□ 1.28
MSH6-208ENST00000493177 TRIM41Q8WV44 630 aa23.02■■□□□ 1.28
MSH6-208ENST00000493177 GRIN2BQ13224 1484 aa23■■□□□ 1.27
MSH6-208ENST00000493177 GAPVD1Q14C86 1478 aa22.98■■□□□ 1.27
MSH6-208ENST00000493177 ABCA10Q8WWZ4 1543 aa22.98■■□□□ 1.27
MSH6-208ENST00000493177 MAGI1Q96QZ7 1491 aaPredicted RBP22.97■■□□□ 1.27
MSH6-208ENST00000493177 ABCA5Q8WWZ7 1642 aa22.95■■□□□ 1.26
MSH6-208ENST00000493177 CHMP7Q8WUX9 453 aaPredicted RBP22.94■■□□□ 1.26
MSH6-208ENST00000493177 RIMBP3CA6NJZ7 1639 aa22.93■■□□□ 1.26
MSH6-208ENST00000493177 RIMBP3BA6NNM3 1639 aa22.93■■□□□ 1.26
MSH6-208ENST00000493177 RIMBP3Q9UFD9 1639 aa22.93■■□□□ 1.26
MSH6-208ENST00000493177 SYNJ2O15056 1496 aa22.88■■□□□ 1.25
MSH6-208ENST00000493177 ARHGEF11O15085 1522 aa22.87■■□□□ 1.25
MSH6-208ENST00000493177 ADAMTS12P58397 1594 aa22.77■■□□□ 1.24
MSH6-208ENST00000493177 CLASP1Q7Z460 1538 aa22.76■■□□□ 1.23
MSH6-208ENST00000493177 ERICH3Q5RHP9 1530 aa22.74■■□□□ 1.23
MSH6-208ENST00000493177 GRIN2AQ12879 1464 aa22.71■■□□□ 1.23
MSH6-208ENST00000493177 FHAD1B1AJZ9 1412 aa22.69■■□□□ 1.22
MSH6-208ENST00000493177 CYB5RLQ6IPT4 315 aa22.68■■□□□ 1.22
MSH6-208ENST00000493177 ARAP1Q96P48 1450 aa22.64■■□□□ 1.21
MSH6-208ENST00000493177 CHIC1Q5VXU3 224 aa22.63■■□□□ 1.21
MSH6-208ENST00000493177 CEP170Q5SW79 1584 aa22.61■■□□□ 1.21
MSH6-208ENST00000493177 KIF27Q86VH2 1401 aa22.61■■□□□ 1.21
MSH6-208ENST00000493177 NUP160Q12769 1436 aa22.57■■□□□ 1.2
MSH6-208ENST00000493177 CUL7Q14999 1698 aa22.56■■□□□ 1.2
MSH6-208ENST00000493177 SHROOM2Q13796 1616 aa22.46■■□□□ 1.19
MSH6-208ENST00000493177 IGF1RP08069 1367 aa22.45■■□□□ 1.18
MSH6-208ENST00000493177 RUSC2Q8N2Y8 1516 aa22.44■■□□□ 1.18
MSH6-208ENST00000493177 ERCC6L2Q5T890 1561 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms