RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 RANGAP1P46060 587 aaPredicted RBP21.98■■□□□ 1.11
CLK3-204ENST00000483723 PPARGC1BQ86YN6 1023 aaKnown RBP21.88■■□□□ 1.09
CLK3-204ENST00000483723 SNAPC4Q5SXM2 1469 aa21.88■■□□□ 1.09
CLK3-204ENST00000483723 EFCAB5A4FU69 1503 aa21.88■■□□□ 1.09
CLK3-204ENST00000483723 MAGI1Q96QZ7 1491 aaPredicted RBP21.87■■□□□ 1.09
CLK3-204ENST00000483723 DNAJC5Q9H3Z4 198 aa21.8■■□□□ 1.08
CLK3-204ENST00000483723 SAMD9Q5K651 1589 aa21.8■■□□□ 1.08
CLK3-204ENST00000483723 GRIN2AQ12879 1464 aa21.79■■□□□ 1.08
CLK3-204ENST00000483723 SYNJ2O15056 1496 aa21.78■■□□□ 1.08
CLK3-204ENST00000483723 APLP2Q06481 763 aa21.77■■□□□ 1.08
CLK3-204ENST00000483723 IQGAP2Q13576 1575 aa21.75■■□□□ 1.07
CLK3-204ENST00000483723 KIAA0586Q9BVV6 1533 aa21.73■■□□□ 1.07
CLK3-204ENST00000483723 MAP3K1Q13233 1512 aa21.73■■□□□ 1.07
CLK3-204ENST00000483723 FHOD3Q2V2M9 1422 aa21.72■■□□□ 1.07
CLK3-204ENST00000483723 P3H3Q8IVL6 736 aa21.71■■□□□ 1.07
CLK3-204ENST00000483723 UGGT2Q9NYU1 1516 aa21.7■■□□□ 1.06
CLK3-204ENST00000483723 CHMP7Q8WUX9 453 aaPredicted RBP21.69■■□□□ 1.06
CLK3-204ENST00000483723 FMN1Q68DA7 1419 aa21.67■■□□□ 1.06
CLK3-204ENST00000483723 NUP160Q12769 1436 aa21.66■■□□□ 1.06
CLK3-204ENST00000483723 CASKIN1Q8WXD9 1431 aa21.66■■□□□ 1.06
CLK3-204ENST00000483723 CEP170Q5SW79 1584 aa21.65■■□□□ 1.06
CLK3-204ENST00000483723 PCF11O94913 1555 aaKnown RBP21.64■■□□□ 1.06
CLK3-204ENST00000483723 FYCO1Q9BQS8 1478 aa21.63■■□□□ 1.05
CLK3-204ENST00000483723 TTBK1Q5TCY1 1321 aaPredicted RBP21.63■■□□□ 1.05
CLK3-204ENST00000483723 KANK4Q5T7N3 995 aaPredicted RBP21.63■■□□□ 1.05
CLK3-204ENST00000483723 TIAM1Q13009 1591 aa21.62■■□□□ 1.05
CLK3-204ENST00000483723 CFAP43Q8NDM7 1665 aa21.58■■□□□ 1.04
CLK3-204ENST00000483723 DISP1Q96F81 1524 aa21.57■■□□□ 1.04
CLK3-204ENST00000483723 FBLN2P98095 1184 aa21.56■■□□□ 1.04
CLK3-204ENST00000483723 KIAA0556O60303 1618 aa21.54■■□□□ 1.04
CLK3-204ENST00000483723 LRRC9Q6ZRR7 1453 aa21.52■■□□□ 1.04
CLK3-204ENST00000483723 CHD1O14646 1710 aa21.5■■□□□ 1.03
CLK3-204ENST00000483723 HRCP23327 699 aa21.49■■□□□ 1.03
CLK3-204ENST00000483723 JPH4Q96JJ6 628 aa21.49■■□□□ 1.03
CLK3-204ENST00000483723 LRRIQ1Q96JM4 1722 aa21.48■■□□□ 1.03
CLK3-204ENST00000483723 ATP1B4Q9UN42 357 aaPredicted RBP21.44■■□□□ 1.02
CLK3-204ENST00000483723 RRBP1Q9P2E9 1410 aaKnown RBP21.44■■□□□ 1.02
CLK3-204ENST00000483723 CARMIL2Q6F5E8 1435 aa21.42■■□□□ 1.02
CLK3-204ENST00000483723 HECW1Q76N89 1606 aa21.42■■□□□ 1.02
CLK3-204ENST00000483723 CCDC18Q5T9S5 1454 aa21.4■■□□□ 1.02
CLK3-204ENST00000483723 SHROOM2Q13796 1616 aa21.36■■□□□ 1.01
CLK3-204ENST00000483723 EPRSP07814 1512 aaKnown RBP21.36■■□□□ 1.01
CLK3-204ENST00000483723 RAPGEF6Q8TEU7 1601 aa21.34■■□□□ 1.01
CLK3-204ENST00000483723 PHLDB1Q86UU1 1377 aa21.32■■□□□ 1
CLK3-204ENST00000483723 CCNB3Q8WWL7 1395 aa21.32■■□□□ 1
CLK3-204ENST00000483723 MTUS2Q5JR59 1369 aa21.31■■□□□ 1
CLK3-204ENST00000483723 PRG4Q92954 1404 aaPredicted RBP21.31■■□□□ 1
CLK3-204ENST00000483723 EHBP1L1Q8N3D4 1523 aa21.3■■□□□ 1
CLK3-204ENST00000483723 NUP153P49790 1475 aaKnown RBP21.29■■□□□ 1
CLK3-204ENST00000483723 CLASP1Q7Z460 1538 aa21.29■■□□□ 1
CLK3-204ENST00000483723 MAGI3Q5TCQ9 1506 aa21.28■■□□□ 1
CLK3-204ENST00000483723 HNRNPUL2Q1KMD3 747 aaKnown RBP21.26■□□□□ 0.99
CLK3-204ENST00000483723 ABCA8O94911 1581 aa21.26■□□□□ 0.99
CLK3-204ENST00000483723 CDK13Q14004 1512 aaKnown RBP21.26■□□□□ 0.99
CLK3-204ENST00000483723 ARHGEF11O15085 1522 aa21.25■□□□□ 0.99
CLK3-204ENST00000483723 SUPT6HQ7KZ85 1726 aaKnown RBP21.25■□□□□ 0.99
CLK3-204ENST00000483723 PLB1Q6P1J6 1458 aa21.24■□□□□ 0.99
CLK3-204ENST00000483723 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.23■□□□□ 0.99
CLK3-204ENST00000483723 ZEB1P37275 1124 aaPredicted RBP21.23■□□□□ 0.99
CLK3-204ENST00000483723 NCOA2Q15596 1464 aa21.22■□□□□ 0.99
CLK3-204ENST00000483723 PTPRGP23470 1445 aa21.2■□□□□ 0.98
CLK3-204ENST00000483723 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.18■□□□□ 0.98
CLK3-204ENST00000483723 OSCARQ8IYS5 282 aa21.18■□□□□ 0.98
CLK3-204ENST00000483723 FGD6Q6ZV73 1430 aa21.17■□□□□ 0.98
CLK3-204ENST00000483723 MYOM3Q5VTT5 1437 aa21.16■□□□□ 0.98
CLK3-204ENST00000483723 ERCC6L2Q5T890 1561 aa21.15■□□□□ 0.98
CLK3-204ENST00000483723 CDK11AQ9UQ88 783 aaPredicted RBP21.15■□□□□ 0.98
CLK3-204ENST00000483723 ARID3CA6NKF2 412 aa21.12■□□□□ 0.97
CLK3-204ENST00000483723 ATP10BO94823 1461 aa21.12■□□□□ 0.97
CLK3-204ENST00000483723 TROQ12816 1431 aaPredicted RBP21.11■□□□□ 0.97
CLK3-204ENST00000483723 CCER1Q8TC90 406 aaPredicted RBP21.11■□□□□ 0.97
CLK3-204ENST00000483723 UACAQ9BZF9 1416 aa21.1■□□□□ 0.97
CLK3-204ENST00000483723 FAM50AQ14320 339 aaKnown RBP21.08■□□□□ 0.97
CLK3-204ENST00000483723 MIA2Q96PC5 1412 aa21.07■□□□□ 0.96
CLK3-204ENST00000483723 ADCY10Q96PN6 1610 aa21.07■□□□□ 0.96
CLK3-204ENST00000483723 TCOF1Q13428 1488 aaKnown RBP21.06■□□□□ 0.96
CLK3-204ENST00000483723 PTPN23Q9H3S7 1636 aa21.05■□□□□ 0.96
CLK3-204ENST00000483723 ABCC2Q92887 1545 aa21.02■□□□□ 0.96
CLK3-204ENST00000483723 ITGAEP38570 1179 aa21.01■□□□□ 0.95
CLK3-204ENST00000483723 UHRF1BP1LA0JNW5 1464 aa21.01■□□□□ 0.95
CLK3-204ENST00000483723 PLEKHD1A6NEE1 506 aa21.01■□□□□ 0.95
CLK3-204ENST00000483723 SETD5Q9C0A6 1442 aa20.97■□□□□ 0.95
CLK3-204ENST00000483723 KIF14Q15058 1648 aa20.97■□□□□ 0.95
CLK3-204ENST00000483723 PTPRKQ15262 1439 aa20.96■□□□□ 0.95
CLK3-204ENST00000483723 ABCC10Q5T3U5 1492 aa20.94■□□□□ 0.94
CLK3-204ENST00000483723 GPATCH8Q9UKJ3 1502 aaKnown RBP20.94■□□□□ 0.94
CLK3-204ENST00000483723 RAB3GAP2Q9H2M9 1393 aa20.93■□□□□ 0.94
CLK3-204ENST00000483723 ITSN2Q9NZM3 1697 aa20.93■□□□□ 0.94
CLK3-204ENST00000483723 DHX57Q6P158 1386 aaKnown RBP20.92■□□□□ 0.94
CLK3-204ENST00000483723 KDM5BQ9UGL1 1544 aa20.91■□□□□ 0.94
CLK3-204ENST00000483723 CLSPNQ9HAW4 1339 aa20.9■□□□□ 0.94
CLK3-204ENST00000483723 CDC42BPAQ5VT25 1732 aa20.87■□□□□ 0.93
CLK3-204ENST00000483723 HFM1A2PYH4 1435 aa20.87■□□□□ 0.93
CLK3-204ENST00000483723 ZCCHC11Q5TAX3 1644 aaKnown RBP20.87■□□□□ 0.93
CLK3-204ENST00000483723 CFDP1Q9UEE9 299 aaPredicted RBP20.84■□□□□ 0.93
CLK3-204ENST00000483723 DNMT1P26358 1616 aaKnown RBP20.84■□□□□ 0.93
CLK3-204ENST00000483723 AKNAQ7Z591 1439 aa20.84■□□□□ 0.93
CLK3-204ENST00000483723 NAIPQ13075 1403 aa20.83■□□□□ 0.92
CLK3-204ENST00000483723 ZNF644Q9H582 1327 aaPredicted RBP20.83■□□□□ 0.92
CLK3-204ENST00000483723 RIMBP3CA6NJZ7 1639 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms