RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 IFT140Q96RY7 1462 aa9.64□□□□□ -0.87
CLK1-210ENST00000473565 CTTNBP2Q8WZ74 1663 aa9.62□□□□□ -0.87
CLK1-210ENST00000473565 FHOD3Q2V2M9 1422 aa9.61□□□□□ -0.87
CLK1-210ENST00000473565 EIF4G3O43432 1585 aaKnown RBP9.61□□□□□ -0.87
CLK1-210ENST00000473565 KANK4Q5T7N3 995 aaPredicted RBP9.61□□□□□ -0.87
CLK1-210ENST00000473565 GRIN2BQ13224 1484 aa9.6□□□□□ -0.87
CLK1-210ENST00000473565 ADAMTS12P58397 1594 aa9.59□□□□□ -0.87
CLK1-210ENST00000473565 ATP1B4Q9UN42 357 aaPredicted RBP9.59□□□□□ -0.87
CLK1-210ENST00000473565 FHAD1B1AJZ9 1412 aa9.58□□□□□ -0.88
CLK1-210ENST00000473565 SNAPC4Q5SXM2 1469 aa9.58□□□□□ -0.88
CLK1-210ENST00000473565 FBLN2P98095 1184 aa9.56□□□□□ -0.88
CLK1-210ENST00000473565 PCF11O94913 1555 aaKnown RBP9.55□□□□□ -0.88
CLK1-210ENST00000473565 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.54□□□□□ -0.88
CLK1-210ENST00000473565 HNRNPUL2Q1KMD3 747 aaKnown RBP9.54□□□□□ -0.88
CLK1-210ENST00000473565 EFCAB5A4FU69 1503 aa9.53□□□□□ -0.88
CLK1-210ENST00000473565 CHMP7Q8WUX9 453 aaPredicted RBP9.52□□□□□ -0.89
CLK1-210ENST00000473565 SAMD9Q5K651 1589 aa9.51□□□□□ -0.89
CLK1-210ENST00000473565 GRIN2AQ12879 1464 aa9.51□□□□□ -0.89
CLK1-210ENST00000473565 IQGAP2Q13576 1575 aa9.51□□□□□ -0.89
CLK1-210ENST00000473565 TIAM1Q13009 1591 aa9.51□□□□□ -0.89
CLK1-210ENST00000473565 MAGI1Q96QZ7 1491 aaPredicted RBP9.49□□□□□ -0.89
CLK1-210ENST00000473565 ARID3CA6NKF2 412 aa9.48□□□□□ -0.89
CLK1-210ENST00000473565 SYNJ2O15056 1496 aa9.48□□□□□ -0.89
CLK1-210ENST00000473565 CASKIN1Q8WXD9 1431 aa9.48□□□□□ -0.89
CLK1-210ENST00000473565 CEP170Q5SW79 1584 aa9.47□□□□□ -0.89
CLK1-210ENST00000473565 FMN1Q68DA7 1419 aa9.47□□□□□ -0.89
CLK1-210ENST00000473565 FYCO1Q9BQS8 1478 aa9.47□□□□□ -0.89
CLK1-210ENST00000473565 CCER1Q8TC90 406 aaPredicted RBP9.46□□□□□ -0.89
CLK1-210ENST00000473565 LRRC9Q6ZRR7 1453 aa9.46□□□□□ -0.89
CLK1-210ENST00000473565 LRRIQ1Q96JM4 1722 aa9.46□□□□□ -0.89
CLK1-210ENST00000473565 CFAP43Q8NDM7 1665 aa9.46□□□□□ -0.9
CLK1-210ENST00000473565 KIAA0586Q9BVV6 1533 aa9.45□□□□□ -0.9
CLK1-210ENST00000473565 ITGAEP38570 1179 aa9.45□□□□□ -0.9
CLK1-210ENST00000473565 MAP3K1Q13233 1512 aa9.43□□□□□ -0.9
CLK1-210ENST00000473565 UGGT2Q9NYU1 1516 aa9.43□□□□□ -0.9
CLK1-210ENST00000473565 PHLDB1Q86UU1 1377 aa9.43□□□□□ -0.9
CLK1-210ENST00000473565 DISP1Q96F81 1524 aa9.43□□□□□ -0.9
CLK1-210ENST00000473565 KIAA0556O60303 1618 aa9.42□□□□□ -0.9
CLK1-210ENST00000473565 RRBP1Q9P2E9 1410 aaKnown RBP9.41□□□□□ -0.9
CLK1-210ENST00000473565 CCNB3Q8WWL7 1395 aa9.41□□□□□ -0.9
CLK1-210ENST00000473565 NUP160Q12769 1436 aa9.41□□□□□ -0.9
CLK1-210ENST00000473565 CHD1O14646 1710 aa9.4□□□□□ -0.9
CLK1-210ENST00000473565 JPH4Q96JJ6 628 aa9.4□□□□□ -0.91
CLK1-210ENST00000473565 CDK13Q14004 1512 aaKnown RBP9.4□□□□□ -0.91
CLK1-210ENST00000473565 MTUS2Q5JR59 1369 aa9.4□□□□□ -0.91
CLK1-210ENST00000473565 FAM50AQ14320 339 aaKnown RBP9.39□□□□□ -0.91
CLK1-210ENST00000473565 MAGI3Q5TCQ9 1506 aa9.38□□□□□ -0.91
CLK1-210ENST00000473565 ZEB1P37275 1124 aaPredicted RBP9.38□□□□□ -0.91
CLK1-210ENST00000473565 HECW1Q76N89 1606 aa9.37□□□□□ -0.91
CLK1-210ENST00000473565 EPRSP07814 1512 aaKnown RBP9.37□□□□□ -0.91
CLK1-210ENST00000473565 PLB1Q6P1J6 1458 aa9.36□□□□□ -0.91
CLK1-210ENST00000473565 NUP153P49790 1475 aaKnown RBP9.34□□□□□ -0.91
CLK1-210ENST00000473565 NCOA2Q15596 1464 aa9.34□□□□□ -0.91
CLK1-210ENST00000473565 RAPGEF6Q8TEU7 1601 aa9.33□□□□□ -0.92
CLK1-210ENST00000473565 CCDC18Q5T9S5 1454 aa9.33□□□□□ -0.92
CLK1-210ENST00000473565 CARMIL2Q6F5E8 1435 aa9.33□□□□□ -0.92
CLK1-210ENST00000473565 PRG4Q92954 1404 aaPredicted RBP9.33□□□□□ -0.92
CLK1-210ENST00000473565 EHBP1L1Q8N3D4 1523 aa9.32□□□□□ -0.92
CLK1-210ENST00000473565 FGD6Q6ZV73 1430 aa9.32□□□□□ -0.92
CLK1-210ENST00000473565 SUPT6HQ7KZ85 1726 aaKnown RBP9.32□□□□□ -0.92
CLK1-210ENST00000473565 ERCC6L2Q5T890 1561 aa9.31□□□□□ -0.92
CLK1-210ENST00000473565 MYOM3Q5VTT5 1437 aa9.29□□□□□ -0.92
CLK1-210ENST00000473565 RAB3GAP2Q9H2M9 1393 aa9.28□□□□□ -0.92
CLK1-210ENST00000473565 ARHGEF11O15085 1522 aa9.27□□□□□ -0.93
CLK1-210ENST00000473565 PTPRGP23470 1445 aa9.27□□□□□ -0.93
CLK1-210ENST00000473565 DHX57Q6P158 1386 aaKnown RBP9.27□□□□□ -0.93
CLK1-210ENST00000473565 PTPRKQ15262 1439 aa9.27□□□□□ -0.93
CLK1-210ENST00000473565 PTPN23Q9H3S7 1636 aa9.26□□□□□ -0.93
CLK1-210ENST00000473565 ABCA8O94911 1581 aa9.26□□□□□ -0.93
CLK1-210ENST00000473565 SHROOM2Q13796 1616 aa9.25□□□□□ -0.93
CLK1-210ENST00000473565 CHIC2Q9UKJ5 165 aa9.25□□□□□ -0.93
CLK1-210ENST00000473565 KIF14Q15058 1648 aa9.25□□□□□ -0.93
CLK1-210ENST00000473565 SETD5Q9C0A6 1442 aa9.25□□□□□ -0.93
CLK1-210ENST00000473565 ZNF644Q9H582 1327 aaPredicted RBP9.24□□□□□ -0.93
CLK1-210ENST00000473565 ATP10BO94823 1461 aa9.24□□□□□ -0.93
CLK1-210ENST00000473565 CDK11AQ9UQ88 783 aaPredicted RBP9.24□□□□□ -0.93
CLK1-210ENST00000473565 CLASP1Q7Z460 1538 aa9.24□□□□□ -0.93
CLK1-210ENST00000473565 TROQ12816 1431 aaPredicted RBP9.23□□□□□ -0.93
CLK1-210ENST00000473565 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.22□□□□□ -0.93
CLK1-210ENST00000473565 RRP7BPQ9NSQ0 103 aa9.22□□□□□ -0.93
CLK1-210ENST00000473565 ZNF777Q9ULD5 760 aaPredicted RBP9.21□□□□□ -0.93
CLK1-210ENST00000473565 PLEKHD1A6NEE1 506 aa9.2□□□□□ -0.94
CLK1-210ENST00000473565 UACAQ9BZF9 1416 aa9.2□□□□□ -0.94
CLK1-210ENST00000473565 TCOF1Q13428 1488 aaKnown RBP9.2□□□□□ -0.94
CLK1-210ENST00000473565 MIA2Q96PC5 1412 aa9.18□□□□□ -0.94
CLK1-210ENST00000473565 CFDP1Q9UEE9 299 aaPredicted RBP9.18□□□□□ -0.94
CLK1-210ENST00000473565 GPATCH8Q9UKJ3 1502 aaKnown RBP9.18□□□□□ -0.94
CLK1-210ENST00000473565 NAIPQ13075 1403 aa9.18□□□□□ -0.94
CLK1-210ENST00000473565 MAPKBP1O60336 1514 aa9.18□□□□□ -0.94
CLK1-210ENST00000473565 ADCY10Q96PN6 1610 aa9.17□□□□□ -0.94
CLK1-210ENST00000473565 HFM1A2PYH4 1435 aa9.17□□□□□ -0.94
CLK1-210ENST00000473565 SIN3AQ96ST3 1273 aa9.16□□□□□ -0.94
CLK1-210ENST00000473565 ABCC2Q92887 1545 aa9.16□□□□□ -0.94
CLK1-210ENST00000473565 KDM6BO15054 1643 aa9.16□□□□□ -0.94
CLK1-210ENST00000473565 KCNH8Q96L42 1107 aa9.16□□□□□ -0.94
CLK1-210ENST00000473565 CAMSAP2Q08AD1 1489 aa9.16□□□□□ -0.94
CLK1-210ENST00000473565 CDC42BPAQ5VT25 1732 aa9.16□□□□□ -0.94
CLK1-210ENST00000473565 ABCC10Q5T3U5 1492 aa9.15□□□□□ -0.94
CLK1-210ENST00000473565 ABCC5O15440 1437 aa9.15□□□□□ -0.95
CLK1-210ENST00000473565 DAPK1P53355 1430 aa9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms