RNA–Protein interactions for RNA: ENST00000473565.5

CLK1-210, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 3,208 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-210ENST00000473565 NISCHQ9Y2I1 1504 aa13.87□□□□□ -0.19
CLK1-210ENST00000473565 CCDC180Q9P1Z9 1646 aa11.97□□□□□ -0.49
CLK1-210ENST00000473565 ZCCHC6Q5VYS8 1495 aaKnown RBP11.66□□□□□ -0.54
CLK1-210ENST00000473565 DCAF8L2P0C7V8 631 aa11.63□□□□□ -0.55
CLK1-210ENST00000473565 SHROOM4Q9ULL8 1493 aa11.59□□□□□ -0.55
CLK1-210ENST00000473565 ABCC9O60706 1549 aa11.44□□□□□ -0.58
CLK1-210ENST00000473565 DCAF1Q9Y4B6 1507 aa11.36□□□□□ -0.59
CLK1-210ENST00000473565 SCRIBQ14160 1630 aa11.19□□□□□ -0.62
CLK1-210ENST00000473565 SUPT5HO00267 1087 aaKnown RBP11.16□□□□□ -0.62
CLK1-210ENST00000473565 MYO15BQ96JP2 1530 aa11.16□□□□□ -0.62
CLK1-210ENST00000473565 NACADO15069 1562 aa11.14□□□□□ -0.63
CLK1-210ENST00000473565 RB1CC1Q8TDY2 1594 aa11.05□□□□□ -0.64
CLK1-210ENST00000473565 UNC13AQ9UPW8 1703 aa10.91□□□□□ -0.66
CLK1-210ENST00000473565 CECR2Q9BXF3 1484 aa10.86□□□□□ -0.67
CLK1-210ENST00000473565 PABPN1Q86U42 306 aaKnown RBP eCLIP10.86□□□□□ -0.67
CLK1-210ENST00000473565 RSF1Q96T23 1441 aaPredicted RBP10.83□□□□□ -0.68
CLK1-210ENST00000473565 BICRAQ9NZM4 1560 aa10.78□□□□□ -0.68
CLK1-210ENST00000473565 MROH2BQ7Z745 1585 aa10.78□□□□□ -0.68
CLK1-210ENST00000473565 WIZO95785 1651 aa10.71□□□□□ -0.69
CLK1-210ENST00000473565 BAZ1AQ9NRL2 1556 aaPredicted RBP10.68□□□□□ -0.7
CLK1-210ENST00000473565 CHIC1Q5VXU3 224 aa10.65□□□□□ -0.7
CLK1-210ENST00000473565 SMARCA4P51532 1647 aa10.65□□□□□ -0.7
CLK1-210ENST00000473565 TOP2AP11388 1531 aaKnown RBP10.51□□□□□ -0.73
CLK1-210ENST00000473565 CCDC88BA6NC98 1476 aa10.46□□□□□ -0.73
CLK1-210ENST00000473565 ATAD2BQ9ULI0 1458 aa10.46□□□□□ -0.73
CLK1-210ENST00000473565 SMARCA2P51531 1590 aa10.46□□□□□ -0.74
CLK1-210ENST00000473565 EIF4G1Q04637 1599 aaKnown RBP10.44□□□□□ -0.74
CLK1-210ENST00000473565 PEG3Q9GZU2 1588 aa10.44□□□□□ -0.74
CLK1-210ENST00000473565 BAZ1BQ9UIG0 1483 aaKnown RBP10.41□□□□□ -0.74
CLK1-210ENST00000473565 TRIM41Q8WV44 630 aa10.41□□□□□ -0.74
CLK1-210ENST00000473565 LOC105371045A0A1W2PR82 267 aa10.34□□□□□ -0.75
CLK1-210ENST00000473565 FAM9AQ8IZU1 332 aaPredicted RBP10.34□□□□□ -0.75
CLK1-210ENST00000473565 ABCC8Q09428 1581 aa10.34□□□□□ -0.75
CLK1-210ENST00000473565 NCAPD3P42695 1498 aa10.31□□□□□ -0.76
CLK1-210ENST00000473565 EHMT2Q96KQ7 1210 aa10.29□□□□□ -0.76
CLK1-210ENST00000473565 CC2D2AQ9P2K1 1620 aa10.29□□□□□ -0.76
CLK1-210ENST00000473565 HMGXB3Q12766 1538 aa10.28□□□□□ -0.76
CLK1-210ENST00000473565 WRNQ14191 1432 aaPredicted RBP eCLIP10.18□□□□□ -0.78
CLK1-210ENST00000473565 SYNJ1O43426 1573 aa10.17□□□□□ -0.78
CLK1-210ENST00000473565 DNAJC5BQ9UF47 199 aa10.17□□□□□ -0.78
CLK1-210ENST00000473565 SOGA1O94964 1423 aa10.16□□□□□ -0.78
CLK1-210ENST00000473565 RUSC2Q8N2Y8 1516 aa10.14□□□□□ -0.79
CLK1-210ENST00000473565 CFTRP13569 1480 aa10.13□□□□□ -0.79
CLK1-210ENST00000473565 CADPSQ9ULU8 1353 aa10.09□□□□□ -0.79
CLK1-210ENST00000473565 NESP48681 1621 aa10.08□□□□□ -0.8
CLK1-210ENST00000473565 CUX1P39880 1505 aa10.06□□□□□ -0.8
CLK1-210ENST00000473565 TOP2BQ02880 1626 aa10.06□□□□□ -0.8
CLK1-210ENST00000473565 PRDM2Q13029 1718 aa10.04□□□□□ -0.8
CLK1-210ENST00000473565 CSRNP3Q8WYN3 585 aa10.03□□□□□ -0.8
CLK1-210ENST00000473565 BIVM-ERCC5R4GMW8 1640 aa10.03□□□□□ -0.8
CLK1-210ENST00000473565 FANCD2Q9BXW9 1451 aa10□□□□□ -0.81
CLK1-210ENST00000473565 EEA1Q15075 1411 aa9.99□□□□□ -0.81
CLK1-210ENST00000473565 UBTFP17480 764 aaKnown RBP9.97□□□□□ -0.81
CLK1-210ENST00000473565 PCGF6Q9BYE7 350 aa9.94□□□□□ -0.82
CLK1-210ENST00000473565 FGD5Q6ZNL6 1462 aa9.94□□□□□ -0.82
CLK1-210ENST00000473565 LAMC3Q9Y6N6 1575 aa9.94□□□□□ -0.82
CLK1-210ENST00000473565 GOLGA3Q08378 1498 aa9.93□□□□□ -0.82
CLK1-210ENST00000473565 PPARGC1BQ86YN6 1023 aaKnown RBP9.93□□□□□ -0.82
CLK1-210ENST00000473565 RAPGEF2Q9Y4G8 1499 aa9.92□□□□□ -0.82
CLK1-210ENST00000473565 RANGAP1P46060 587 aaPredicted RBP9.92□□□□□ -0.82
CLK1-210ENST00000473565 CEP162Q5TB80 1403 aa9.91□□□□□ -0.82
CLK1-210ENST00000473565 CEP164Q9UPV0 1460 aa9.91□□□□□ -0.82
CLK1-210ENST00000473565 KIF21AQ7Z4S6 1674 aa9.9□□□□□ -0.82
CLK1-210ENST00000473565 TNIKQ9UKE5 1360 aa9.9□□□□□ -0.82
CLK1-210ENST00000473565 CUX2O14529 1486 aa9.9□□□□□ -0.82
CLK1-210ENST00000473565 TOPBP1Q92547 1522 aa9.9□□□□□ -0.82
CLK1-210ENST00000473565 KIF21BO75037 1637 aa9.9□□□□□ -0.83
CLK1-210ENST00000473565 KIF27Q86VH2 1401 aa9.89□□□□□ -0.83
CLK1-210ENST00000473565 RAD54L2Q9Y4B4 1467 aa9.89□□□□□ -0.83
CLK1-210ENST00000473565 DNMBPQ6XZF7 1577 aa9.89□□□□□ -0.83
CLK1-210ENST00000473565 URB2Q14146 1524 aaKnown RBP9.89□□□□□ -0.83
CLK1-210ENST00000473565 PDS5BQ9NTI5 1447 aa9.88□□□□□ -0.83
CLK1-210ENST00000473565 POLA1P09884 1462 aaPredicted RBP9.87□□□□□ -0.83
CLK1-210ENST00000473565 TTBK1Q5TCY1 1321 aaPredicted RBP9.85□□□□□ -0.83
CLK1-210ENST00000473565 PRXQ9BXM0 1461 aa9.85□□□□□ -0.83
CLK1-210ENST00000473565 IGF1RP08069 1367 aa9.82□□□□□ -0.84
CLK1-210ENST00000473565 CLIP1P30622 1438 aa9.81□□□□□ -0.84
CLK1-210ENST00000473565 TRIM26Q12899 539 aaPredicted RBP9.81□□□□□ -0.84
CLK1-210ENST00000473565 ERICH3Q5RHP9 1530 aa9.8□□□□□ -0.84
CLK1-210ENST00000473565 TDRD9Q8NDG6 1382 aaKnown RBP9.8□□□□□ -0.84
CLK1-210ENST00000473565 ABCA10Q8WWZ4 1543 aa9.79□□□□□ -0.84
CLK1-210ENST00000473565 CARMIL1Q5VZK9 1371 aa9.78□□□□□ -0.84
CLK1-210ENST00000473565 MRC2Q9UBG0 1479 aa9.76□□□□□ -0.85
CLK1-210ENST00000473565 WDR97A6NE52 1622 aa9.76□□□□□ -0.85
CLK1-210ENST00000473565 ERCC6Q03468 1493 aa9.75□□□□□ -0.85
CLK1-210ENST00000473565 TARBP1Q13395 1621 aaKnown RBP9.73□□□□□ -0.85
CLK1-210ENST00000473565 GAPVD1Q14C86 1478 aa9.72□□□□□ -0.85
CLK1-210ENST00000473565 ABCA5Q8WWZ7 1642 aa9.72□□□□□ -0.85
CLK1-210ENST00000473565 AQRO60306 1485 aaKnown RBP eCLIP9.71□□□□□ -0.859e-8■■■□□ 15.7
CLK1-210ENST00000473565 ARAP1Q96P48 1450 aa9.71□□□□□ -0.86
CLK1-210ENST00000473565 VPS8Q8N3P4 1428 aa9.71□□□□□ -0.86
CLK1-210ENST00000473565 WDR62O43379 1518 aa9.69□□□□□ -0.86
CLK1-210ENST00000473565 ZNF608Q9ULD9 1512 aaPredicted RBP9.69□□□□□ -0.86
CLK1-210ENST00000473565 ARHGAP35Q9NRY4 1499 aa9.68□□□□□ -0.86
CLK1-210ENST00000473565 P3H3Q8IVL6 736 aa9.68□□□□□ -0.86
CLK1-210ENST00000473565 CUL7Q14999 1698 aa9.68□□□□□ -0.86
CLK1-210ENST00000473565 THOC2Q8NI27 1593 aaKnown RBP9.67□□□□□ -0.86
CLK1-210ENST00000473565 PBRM1Q86U86 1689 aa9.65□□□□□ -0.86
CLK1-210ENST00000473565 HRCP23327 699 aa9.65□□□□□ -0.86
CLK1-210ENST00000473565 APLP2Q06481 763 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms