RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 PRXQ9BXM0 1461 aa19.85■□□□□ 0.77
VPS13D-204ENST00000469054 JPH4Q96JJ6 628 aa19.79■□□□□ 0.76
VPS13D-204ENST00000469054 KIAA0586Q9BVV6 1533 aa19.78■□□□□ 0.76
VPS13D-204ENST00000469054 ARHGEF11O15085 1522 aa19.76■□□□□ 0.75
VPS13D-204ENST00000469054 RIMBP3CA6NJZ7 1639 aa19.7■□□□□ 0.74
VPS13D-204ENST00000469054 RIMBP3BA6NNM3 1639 aa19.7■□□□□ 0.74
VPS13D-204ENST00000469054 RIMBP3Q9UFD9 1639 aa19.7■□□□□ 0.74
VPS13D-204ENST00000469054 PRG4Q92954 1404 aaPredicted RBP19.68■□□□□ 0.74
VPS13D-204ENST00000469054 SHROOM2Q13796 1616 aa19.67■□□□□ 0.74
VPS13D-204ENST00000469054 CYB5RLQ6IPT4 315 aa19.66■□□□□ 0.74
VPS13D-204ENST00000469054 KIF21BO75037 1637 aa19.63■□□□□ 0.73
VPS13D-204ENST00000469054 IQGAP2Q13576 1575 aa19.63■□□□□ 0.73
VPS13D-204ENST00000469054 ARAP1Q96P48 1450 aa19.63■□□□□ 0.73
VPS13D-204ENST00000469054 ERCC6L2Q5T890 1561 aa19.62■□□□□ 0.73
VPS13D-204ENST00000469054 EHMT2Q96KQ7 1210 aa19.61■□□□□ 0.73
VPS13D-204ENST00000469054 UBTFP17480 764 aaKnown RBP19.59■□□□□ 0.73
VPS13D-204ENST00000469054 GOLGA3Q08378 1498 aa19.59■□□□□ 0.73
VPS13D-204ENST00000469054 CARMIL2Q6F5E8 1435 aa19.57■□□□□ 0.72
VPS13D-204ENST00000469054 UGGT2Q9NYU1 1516 aa19.56■□□□□ 0.72
VPS13D-204ENST00000469054 CTTNBP2Q8WZ74 1663 aa19.52■□□□□ 0.72
VPS13D-204ENST00000469054 DISP1Q96F81 1524 aa19.52■□□□□ 0.72
VPS13D-204ENST00000469054 TNIKQ9UKE5 1360 aa19.51■□□□□ 0.71
VPS13D-204ENST00000469054 PTPRGP23470 1445 aa19.49■□□□□ 0.71
VPS13D-204ENST00000469054 RANGAP1P46060 587 aaPredicted RBP19.48■□□□□ 0.71
VPS13D-204ENST00000469054 TTBK1Q5TCY1 1321 aaPredicted RBP19.47■□□□□ 0.71
VPS13D-204ENST00000469054 KIAA0556O60303 1618 aa19.44■□□□□ 0.7
VPS13D-204ENST00000469054 P3H3Q8IVL6 736 aa19.44■□□□□ 0.7
VPS13D-204ENST00000469054 LOC105371045A0A1W2PR82 267 aa19.38■□□□□ 0.69
VPS13D-204ENST00000469054 SAMD9Q5K651 1589 aa19.36■□□□□ 0.69
VPS13D-204ENST00000469054 UACAQ9BZF9 1416 aa19.35■□□□□ 0.69
VPS13D-204ENST00000469054 NPM1P06748 294 aaKnown RBP eCLIP19.33■□□□□ 0.68
VPS13D-204ENST00000469054 EFCAB5A4FU69 1503 aa19.33■□□□□ 0.68
VPS13D-204ENST00000469054 FHOD3Q2V2M9 1422 aa19.33■□□□□ 0.68
VPS13D-204ENST00000469054 UHRF1BP1LA0JNW5 1464 aa19.3■□□□□ 0.68
VPS13D-204ENST00000469054 ARHGAP35Q9NRY4 1499 aa19.3■□□□□ 0.68
VPS13D-204ENST00000469054 PLB1Q6P1J6 1458 aa19.29■□□□□ 0.68
VPS13D-204ENST00000469054 ADCY10Q96PN6 1610 aa19.28■□□□□ 0.68
VPS13D-204ENST00000469054 ABCC2Q92887 1545 aa19.26■□□□□ 0.67
VPS13D-204ENST00000469054 CLIP1P30622 1438 aa19.25■□□□□ 0.67
VPS13D-204ENST00000469054 ABCA8O94911 1581 aa19.24■□□□□ 0.67
VPS13D-204ENST00000469054 FMN1Q68DA7 1419 aa19.21■□□□□ 0.67
VPS13D-204ENST00000469054 KDM5BQ9UGL1 1544 aa19.2■□□□□ 0.66
VPS13D-204ENST00000469054 CEP162Q5TB80 1403 aa19.2■□□□□ 0.66
VPS13D-204ENST00000469054 TRHP20396 242 aaPredicted RBP19.19■□□□□ 0.66
VPS13D-204ENST00000469054 MAPKBP1O60336 1514 aa19.16■□□□□ 0.66
VPS13D-204ENST00000469054 ARID3CA6NKF2 412 aa19.16■□□□□ 0.66
VPS13D-204ENST00000469054 RAPGEF6Q8TEU7 1601 aa19.14■□□□□ 0.66
VPS13D-204ENST00000469054 ATP10BO94823 1461 aa19.14■□□□□ 0.65
VPS13D-204ENST00000469054 FOXD1Q16676 465 aa19.13■□□□□ 0.65
VPS13D-204ENST00000469054 ASXL2Q76L83 1435 aa19.13■□□□□ 0.65
VPS13D-204ENST00000469054 NUP153P49790 1475 aaKnown RBP19.13■□□□□ 0.65
VPS13D-204ENST00000469054 ATP1B4Q9UN42 357 aaPredicted RBP19.12■□□□□ 0.65
VPS13D-204ENST00000469054 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.11■□□□□ 0.65
VPS13D-204ENST00000469054 HNRNPUL2Q1KMD3 747 aaKnown RBP19.11■□□□□ 0.65
VPS13D-204ENST00000469054 ZCCHC11Q5TAX3 1644 aaKnown RBP19.09■□□□□ 0.65
VPS13D-204ENST00000469054 FAM69CQ0P6D2 419 aa19.08■□□□□ 0.64
VPS13D-204ENST00000469054 ABCC10Q5T3U5 1492 aa19.08■□□□□ 0.64
VPS13D-204ENST00000469054 CASKIN1Q8WXD9 1431 aa19.07■□□□□ 0.64
VPS13D-204ENST00000469054 WDR7Q9Y4E6 1490 aa19.04■□□□□ 0.64
VPS13D-204ENST00000469054 PLEKHD1A6NEE1 506 aa19.03■□□□□ 0.64
VPS13D-204ENST00000469054 KCNH8Q96L42 1107 aa19.03■□□□□ 0.64
VPS13D-204ENST00000469054 EPRSP07814 1512 aaKnown RBP19.02■□□□□ 0.64
VPS13D-204ENST00000469054 HECW1Q76N89 1606 aa19.01■□□□□ 0.63
VPS13D-204ENST00000469054 FYCO1Q9BQS8 1478 aa19■□□□□ 0.63
VPS13D-204ENST00000469054 DIP2BQ9P265 1576 aa19■□□□□ 0.63
VPS13D-204ENST00000469054 CDK11AQ9UQ88 783 aaPredicted RBP18.99■□□□□ 0.63
VPS13D-204ENST00000469054 CDK13Q14004 1512 aaKnown RBP18.99■□□□□ 0.63
VPS13D-204ENST00000469054 PCF11O94913 1555 aaKnown RBP18.98■□□□□ 0.63
VPS13D-204ENST00000469054 PLPPR3Q6T4P5 718 aa18.97■□□□□ 0.63
VPS13D-204ENST00000469054 VPS8Q8N3P4 1428 aa18.96■□□□□ 0.63
VPS13D-204ENST00000469054 CCDC18Q5T9S5 1454 aa18.96■□□□□ 0.63
VPS13D-204ENST00000469054 GLI2P10070 1586 aa18.95■□□□□ 0.62
VPS13D-204ENST00000469054 KIF13AQ9H1H9 1805 aa18.92■□□□□ 0.62
VPS13D-204ENST00000469054 TROQ12816 1431 aaPredicted RBP18.89■□□□□ 0.61
VPS13D-204ENST00000469054 CD109Q6YHK3 1445 aa18.89■□□□□ 0.61
VPS13D-204ENST00000469054 LRRIQ1Q96JM4 1722 aa18.86■□□□□ 0.61
VPS13D-204ENST00000469054 MAP3K4Q9Y6R4 1608 aa18.83■□□□□ 0.61
VPS13D-204ENST00000469054 MTUS2Q5JR59 1369 aa18.81■□□□□ 0.6
VPS13D-204ENST00000469054 MAGI3Q5TCQ9 1506 aa18.81■□□□□ 0.6
VPS13D-204ENST00000469054 ABCA9Q8IUA7 1624 aa18.81■□□□□ 0.6
VPS13D-204ENST00000469054 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.8■□□□□ 0.6
VPS13D-204ENST00000469054 APLP2Q06481 763 aa18.8■□□□□ 0.6
VPS13D-204ENST00000469054 TEX14Q8IWB6 1497 aa18.79■□□□□ 0.6
VPS13D-204ENST00000469054 CFAP43Q8NDM7 1665 aa18.79■□□□□ 0.6
VPS13D-204ENST00000469054 MAP3K1Q13233 1512 aa18.76■□□□□ 0.59
VPS13D-204ENST00000469054 TSPOAP1O95153 1857 aa18.76■□□□□ 0.59
VPS13D-204ENST00000469054 KIF14Q15058 1648 aa18.76■□□□□ 0.59
VPS13D-204ENST00000469054 TIAM1Q13009 1591 aa18.75■□□□□ 0.59
VPS13D-204ENST00000469054 PPRC1Q5VV67 1664 aaKnown RBP18.75■□□□□ 0.59
VPS13D-204ENST00000469054 PLCH2O75038 1416 aa18.74■□□□□ 0.59
VPS13D-204ENST00000469054 TTC37Q6PGP7 1564 aa18.74■□□□□ 0.59
VPS13D-204ENST00000469054 KANK4Q5T7N3 995 aaPredicted RBP18.74■□□□□ 0.59
VPS13D-204ENST00000469054 PHLDB1Q86UU1 1377 aa18.72■□□□□ 0.59
VPS13D-204ENST00000469054 EHBP1L1Q8N3D4 1523 aa18.72■□□□□ 0.59
VPS13D-204ENST00000469054 LRRC9Q6ZRR7 1453 aa18.71■□□□□ 0.59
VPS13D-204ENST00000469054 EFCAB2Q5VUJ9 269 aa18.7■□□□□ 0.58
VPS13D-204ENST00000469054 NEO1Q92859 1461 aa18.7■□□□□ 0.58
VPS13D-204ENST00000469054 FANCAO15360 1455 aa18.68■□□□□ 0.58
VPS13D-204ENST00000469054 COL17A1Q9UMD9 1497 aaPredicted RBP18.68■□□□□ 0.58
VPS13D-204ENST00000469054 CCNB3Q8WWL7 1395 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 526 ms