RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 NISCHQ9Y2I1 1504 aa28.61■■■□□ 2.17
VPS13D-204ENST00000469054 CCDC180Q9P1Z9 1646 aa25.25■■□□□ 1.63
VPS13D-204ENST00000469054 ABCC9O60706 1549 aa24.65■■□□□ 1.54
VPS13D-204ENST00000469054 AEBP2Q6ZN18 517 aaPredicted RBP24.29■■□□□ 1.48
VPS13D-204ENST00000469054 DCAF8L2P0C7V8 631 aa23.93■■□□□ 1.42
VPS13D-204ENST00000469054 ZCCHC6Q5VYS8 1495 aaKnown RBP23.86■■□□□ 1.41
VPS13D-204ENST00000469054 NACADO15069 1562 aa23.78■■□□□ 1.4
VPS13D-204ENST00000469054 RB1CC1Q8TDY2 1594 aa23.74■■□□□ 1.39
VPS13D-204ENST00000469054 MYO15BQ96JP2 1530 aa23.7■■□□□ 1.38
VPS13D-204ENST00000469054 DCAF1Q9Y4B6 1507 aa23.66■■□□□ 1.38
VPS13D-204ENST00000469054 CHIC1Q5VXU3 224 aa23.51■■□□□ 1.35
VPS13D-204ENST00000469054 PABPN1Q86U42 306 aaKnown RBP eCLIP23.13■■□□□ 1.29
VPS13D-204ENST00000469054 SCRIBQ14160 1630 aa23.1■■□□□ 1.29
VPS13D-204ENST00000469054 UNC13AQ9UPW8 1703 aa23.08■■□□□ 1.28
VPS13D-204ENST00000469054 BICRAQ9NZM4 1560 aa23.01■■□□□ 1.27
VPS13D-204ENST00000469054 SHROOM4Q9ULL8 1493 aa22.8■■□□□ 1.24
VPS13D-204ENST00000469054 DNAJC5BQ9UF47 199 aa22.52■■□□□ 1.2
VPS13D-204ENST00000469054 EIF4G1Q04637 1599 aaKnown RBP22.4■■□□□ 1.18
VPS13D-204ENST00000469054 CECR2Q9BXF3 1484 aa22.28■■□□□ 1.16
VPS13D-204ENST00000469054 CC2D2AQ9P2K1 1620 aa22.26■■□□□ 1.15
VPS13D-204ENST00000469054 BAZ1AQ9NRL2 1556 aaPredicted RBP22.14■■□□□ 1.13
VPS13D-204ENST00000469054 SMARCA4P51532 1647 aa22.11■■□□□ 1.13
VPS13D-204ENST00000469054 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
VPS13D-204ENST00000469054 ATAD2BQ9ULI0 1458 aa22.02■■□□□ 1.12
VPS13D-204ENST00000469054 NCAPD3P42695 1498 aa21.98■■□□□ 1.11
VPS13D-204ENST00000469054 SMARCA2P51531 1590 aa21.95■■□□□ 1.11
VPS13D-204ENST00000469054 PEG3Q9GZU2 1588 aa21.91■■□□□ 1.1
VPS13D-204ENST00000469054 RSF1Q96T23 1441 aaPredicted RBP21.89■■□□□ 1.1
VPS13D-204ENST00000469054 HMGXB3Q12766 1538 aa21.84■■□□□ 1.09
VPS13D-204ENST00000469054 BAZ1BQ9UIG0 1483 aaKnown RBP21.83■■□□□ 1.08
VPS13D-204ENST00000469054 WIZO95785 1651 aa21.76■■□□□ 1.07
VPS13D-204ENST00000469054 TOP2AP11388 1531 aaKnown RBP21.57■■□□□ 1.04
VPS13D-204ENST00000469054 SUPT5HO00267 1087 aaKnown RBP21.52■■□□□ 1.04
VPS13D-204ENST00000469054 CADPSQ9ULU8 1353 aa21.38■■□□□ 1.01
VPS13D-204ENST00000469054 NESP48681 1621 aa21.37■■□□□ 1.01
VPS13D-204ENST00000469054 CCDC88BA6NC98 1476 aa21.37■■□□□ 1.01
VPS13D-204ENST00000469054 LAMC3Q9Y6N6 1575 aa21.31■■□□□ 1
VPS13D-204ENST00000469054 CFTRP13569 1480 aa21.26■□□□□ 0.99
VPS13D-204ENST00000469054 PDS5BQ9NTI5 1447 aa21.23■□□□□ 0.99
VPS13D-204ENST00000469054 ERCC6Q03468 1493 aa21.23■□□□□ 0.99
VPS13D-204ENST00000469054 FANCD2Q9BXW9 1451 aa21.09■□□□□ 0.97
VPS13D-204ENST00000469054 CEP164Q9UPV0 1460 aa21.03■□□□□ 0.96
VPS13D-204ENST00000469054 KIF21AQ7Z4S6 1674 aa21.02■□□□□ 0.95
VPS13D-204ENST00000469054 MRC2Q9UBG0 1479 aa20.97■□□□□ 0.95
VPS13D-204ENST00000469054 THOC2Q8NI27 1593 aaKnown RBP20.94■□□□□ 0.94
VPS13D-204ENST00000469054 CUX2O14529 1486 aa20.94■□□□□ 0.94
VPS13D-204ENST00000469054 PRDM2Q13029 1718 aa20.92■□□□□ 0.94
VPS13D-204ENST00000469054 WDR62O43379 1518 aa20.87■□□□□ 0.93
VPS13D-204ENST00000469054 URB2Q14146 1524 aaKnown RBP20.85■□□□□ 0.93
VPS13D-204ENST00000469054 ABCC8Q09428 1581 aa20.79■□□□□ 0.92
VPS13D-204ENST00000469054 TOPBP1Q92547 1522 aa20.76■□□□□ 0.91
VPS13D-204ENST00000469054 PHF23Q9BUL5 403 aaPredicted RBP20.74■□□□□ 0.91
VPS13D-204ENST00000469054 DNMBPQ6XZF7 1577 aa20.72■□□□□ 0.91
VPS13D-204ENST00000469054 CUX1P39880 1505 aa20.67■□□□□ 0.9
VPS13D-204ENST00000469054 WRNQ14191 1432 aaPredicted RBP eCLIP20.64■□□□□ 0.89
VPS13D-204ENST00000469054 POLA1P09884 1462 aaPredicted RBP20.61■□□□□ 0.89
VPS13D-204ENST00000469054 IFT140Q96RY7 1462 aa20.6■□□□□ 0.89
VPS13D-204ENST00000469054 FGD5Q6ZNL6 1462 aa20.57■□□□□ 0.88
VPS13D-204ENST00000469054 SOGA1O94964 1423 aa20.56■□□□□ 0.88
VPS13D-204ENST00000469054 RAD54L2Q9Y4B4 1467 aa20.53■□□□□ 0.88
VPS13D-204ENST00000469054 SYNJ1O43426 1573 aa20.51■□□□□ 0.87
VPS13D-204ENST00000469054 TOP2BQ02880 1626 aa20.5■□□□□ 0.87
VPS13D-204ENST00000469054 SENP3Q9H4L4 574 aaPredicted RBP20.5■□□□□ 0.87
VPS13D-204ENST00000469054 ZNF608Q9ULD9 1512 aaPredicted RBP20.49■□□□□ 0.87
VPS13D-204ENST00000469054 TARBP1Q13395 1621 aaKnown RBP20.47■□□□□ 0.87
VPS13D-204ENST00000469054 BIVM-ERCC5R4GMW8 1640 aa20.46■□□□□ 0.87
VPS13D-204ENST00000469054 TDRD9Q8NDG6 1382 aaKnown RBP20.43■□□□□ 0.86
VPS13D-204ENST00000469054 AQRO60306 1485 aaKnown RBP eCLIP20.43■□□□□ 0.862e-7■■□□□ 12
VPS13D-204ENST00000469054 ABCA10Q8WWZ4 1543 aa20.4■□□□□ 0.86
VPS13D-204ENST00000469054 EIF4G3O43432 1585 aaKnown RBP20.34■□□□□ 0.85
VPS13D-204ENST00000469054 TRIM41Q8WV44 630 aa20.33■□□□□ 0.85
VPS13D-204ENST00000469054 WDR97A6NE52 1622 aa20.32■□□□□ 0.84
VPS13D-204ENST00000469054 GAPVD1Q14C86 1478 aa20.3■□□□□ 0.84
VPS13D-204ENST00000469054 GRIN2BQ13224 1484 aa20.27■□□□□ 0.84
VPS13D-204ENST00000469054 ABCA5Q8WWZ7 1642 aa20.23■□□□□ 0.83
VPS13D-204ENST00000469054 SNAPC4Q5SXM2 1469 aa20.21■□□□□ 0.83
VPS13D-204ENST00000469054 KIF27Q86VH2 1401 aa20.2■□□□□ 0.82
VPS13D-204ENST00000469054 MAGI1Q96QZ7 1491 aaPredicted RBP20.18■□□□□ 0.82
VPS13D-204ENST00000469054 FBLN2P98095 1184 aa20.18■□□□□ 0.82
VPS13D-204ENST00000469054 OSCARQ8IYS5 282 aa20.18■□□□□ 0.82
VPS13D-204ENST00000469054 CHMP7Q8WUX9 453 aaPredicted RBP20.16■□□□□ 0.82
VPS13D-204ENST00000469054 DNAJC5Q9H3Z4 198 aa20.15■□□□□ 0.82
VPS13D-204ENST00000469054 ERICH3Q5RHP9 1530 aa20.13■□□□□ 0.81
VPS13D-204ENST00000469054 IGF1RP08069 1367 aa20.13■□□□□ 0.81
VPS13D-204ENST00000469054 PBRM1Q86U86 1689 aa20.12■□□□□ 0.81
VPS13D-204ENST00000469054 SYNJ2O15056 1496 aa20.11■□□□□ 0.81
VPS13D-204ENST00000469054 FHAD1B1AJZ9 1412 aa20.09■□□□□ 0.81
VPS13D-204ENST00000469054 RUSC2Q8N2Y8 1516 aa20.05■□□□□ 0.8
VPS13D-204ENST00000469054 ADAMTS12P58397 1594 aa20.04■□□□□ 0.8
VPS13D-204ENST00000469054 CHD1O14646 1710 aa20.01■□□□□ 0.79
VPS13D-204ENST00000469054 CARMIL1Q5VZK9 1371 aa20■□□□□ 0.79
VPS13D-204ENST00000469054 GRIN2AQ12879 1464 aa19.99■□□□□ 0.79
VPS13D-204ENST00000469054 CSRNP3Q8WYN3 585 aa19.93■□□□□ 0.78
VPS13D-204ENST00000469054 CUL7Q14999 1698 aa19.93■□□□□ 0.78
VPS13D-204ENST00000469054 NUP160Q12769 1436 aa19.93■□□□□ 0.78
VPS13D-204ENST00000469054 EEA1Q15075 1411 aa19.93■□□□□ 0.78
VPS13D-204ENST00000469054 FAM9AQ8IZU1 332 aaPredicted RBP19.89■□□□□ 0.77
VPS13D-204ENST00000469054 CLASP1Q7Z460 1538 aa19.87■□□□□ 0.77
VPS13D-204ENST00000469054 RAPGEF2Q9Y4G8 1499 aa19.87■□□□□ 0.77
VPS13D-204ENST00000469054 CEP170Q5SW79 1584 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 459.2 ms