RNA–Protein interactions for RNA: ENST00000462165.2

CBX3-205, Transcript of chromobox 3, humanhuman

TSL 3

Gene CBX3, Length 949 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-205ENST00000462165 KIF13AQ9H1H9 1805 aa19.55■□□□□ 0.72
CBX3-205ENST00000462165 PRG4Q92954 1404 aaPredicted RBP19.5■□□□□ 0.71
CBX3-205ENST00000462165 JPH4Q96JJ6 628 aa19.46■□□□□ 0.71
CBX3-205ENST00000462165 RUSC2Q8N2Y8 1516 aa19.45■□□□□ 0.7
CBX3-205ENST00000462165 MAPKBP1O60336 1514 aa19.38■□□□□ 0.69
CBX3-205ENST00000462165 ABCC10Q5T3U5 1492 aa19.38■□□□□ 0.69
CBX3-205ENST00000462165 ADCY10Q96PN6 1610 aa19.35■□□□□ 0.69
CBX3-205ENST00000462165 DIP2BQ9P265 1576 aa19.34■□□□□ 0.69
CBX3-205ENST00000462165 NPM1P06748 294 aaKnown RBP eCLIP19.33■□□□□ 0.68
CBX3-205ENST00000462165 FAM69CQ0P6D2 419 aa19.33■□□□□ 0.68
CBX3-205ENST00000462165 KIAA0586Q9BVV6 1533 aa19.3■□□□□ 0.68
CBX3-205ENST00000462165 FOXD1Q16676 465 aa19.3■□□□□ 0.68
CBX3-205ENST00000462165 CUL7Q14999 1698 aa19.29■□□□□ 0.68
CBX3-205ENST00000462165 IGF1RP08069 1367 aa19.27■□□□□ 0.68
CBX3-205ENST00000462165 KIF27Q86VH2 1401 aa19.25■□□□□ 0.67
CBX3-205ENST00000462165 KDM6BO15054 1643 aa19.23■□□□□ 0.67
CBX3-205ENST00000462165 TSPOAP1O95153 1857 aa19.22■□□□□ 0.67
CBX3-205ENST00000462165 PTPRGP23470 1445 aa19.16■□□□□ 0.66
CBX3-205ENST00000462165 CARMIL1Q5VZK9 1371 aa19.14■□□□□ 0.65
CBX3-205ENST00000462165 KDM4FA0A1W2PPD8 638 aa19.12■□□□□ 0.65
CBX3-205ENST00000462165 ABCC2Q92887 1545 aa19.11■□□□□ 0.65
CBX3-205ENST00000462165 CARMIL2Q6F5E8 1435 aa19.11■□□□□ 0.65
CBX3-205ENST00000462165 TNIKQ9UKE5 1360 aa19.11■□□□□ 0.65
CBX3-205ENST00000462165 IQGAP2Q13576 1575 aa19.1■□□□□ 0.65
CBX3-205ENST00000462165 PPRC1Q5VV67 1664 aaKnown RBP19.08■□□□□ 0.65
CBX3-205ENST00000462165 GLI2P10070 1586 aa19.08■□□□□ 0.65
CBX3-205ENST00000462165 UHRF1BP1LA0JNW5 1464 aa19.06■□□□□ 0.64
CBX3-205ENST00000462165 PLB1Q6P1J6 1458 aa19.06■□□□□ 0.64
CBX3-205ENST00000462165 ASXL2Q76L83 1435 aa19.06■□□□□ 0.64
CBX3-205ENST00000462165 TTBK1Q5TCY1 1321 aaPredicted RBP19.05■□□□□ 0.64
CBX3-205ENST00000462165 DISP1Q96F81 1524 aa19.02■□□□□ 0.64
CBX3-205ENST00000462165 UACAQ9BZF9 1416 aa19.01■□□□□ 0.63
CBX3-205ENST00000462165 KDM5BQ9UGL1 1544 aa18.98■□□□□ 0.63
CBX3-205ENST00000462165 MAP3K4Q9Y6R4 1608 aa18.97■□□□□ 0.63
CBX3-205ENST00000462165 UGGT2Q9NYU1 1516 aa18.97■□□□□ 0.63
CBX3-205ENST00000462165 EPRSP07814 1512 aaKnown RBP18.95■□□□□ 0.62
CBX3-205ENST00000462165 ZCCHC11Q5TAX3 1644 aaKnown RBP18.95■□□□□ 0.62
CBX3-205ENST00000462165 RAPGEF2Q9Y4G8 1499 aa18.94■□□□□ 0.62
CBX3-205ENST00000462165 KIAA0556O60303 1618 aa18.92■□□□□ 0.62
CBX3-205ENST00000462165 COL17A1Q9UMD9 1497 aaPredicted RBP18.92■□□□□ 0.62
CBX3-205ENST00000462165 ADGRL1O94910 1474 aa18.91■□□□□ 0.62
CBX3-205ENST00000462165 TEX14Q8IWB6 1497 aa18.9■□□□□ 0.62
CBX3-205ENST00000462165 CTTNBP2Q8WZ74 1663 aa18.85■□□□□ 0.61
CBX3-205ENST00000462165 WDR7Q9Y4E6 1490 aa18.84■□□□□ 0.61
CBX3-205ENST00000462165 CFAP43Q8NDM7 1665 aa18.8■□□□□ 0.6
CBX3-205ENST00000462165 ILDR1Q86SU0 546 aaPredicted RBP18.79■□□□□ 0.6
CBX3-205ENST00000462165 GOLGA3Q08378 1498 aa18.77■□□□□ 0.6
CBX3-205ENST00000462165 ABCA8O94911 1581 aa18.77■□□□□ 0.6
CBX3-205ENST00000462165 MAGI3Q5TCQ9 1506 aa18.77■□□□□ 0.6
CBX3-205ENST00000462165 HECW2Q9P2P5 1572 aa18.76■□□□□ 0.59
CBX3-205ENST00000462165 CD109Q6YHK3 1445 aa18.74■□□□□ 0.59
CBX3-205ENST00000462165 KCNH8Q96L42 1107 aa18.69■□□□□ 0.58
CBX3-205ENST00000462165 PRXQ9BXM0 1461 aa18.68■□□□□ 0.58
CBX3-205ENST00000462165 KIF21BO75037 1637 aa18.65■□□□□ 0.58
CBX3-205ENST00000462165 ARAP3Q8WWN8 1544 aa18.64■□□□□ 0.57
CBX3-205ENST00000462165 ATP10BO94823 1461 aa18.59■□□□□ 0.57
CBX3-205ENST00000462165 ABCA9Q8IUA7 1624 aa18.59■□□□□ 0.57
CBX3-205ENST00000462165 FAM9AQ8IZU1 332 aaPredicted RBP18.57■□□□□ 0.56
CBX3-205ENST00000462165 PHLDB1Q86UU1 1377 aa18.56■□□□□ 0.56
CBX3-205ENST00000462165 SAMD9Q5K651 1589 aa18.55■□□□□ 0.56
CBX3-205ENST00000462165 ARID3CA6NKF2 412 aa18.53■□□□□ 0.56
CBX3-205ENST00000462165 P3H3Q8IVL6 736 aa18.53■□□□□ 0.56
CBX3-205ENST00000462165 ADAMTSL3P82987 1691 aa18.53■□□□□ 0.56
CBX3-205ENST00000462165 RAPGEF6Q8TEU7 1601 aa18.52■□□□□ 0.56
CBX3-205ENST00000462165 NEO1Q92859 1461 aa18.51■□□□□ 0.55
CBX3-205ENST00000462165 PTPRMP28827 1452 aa18.48■□□□□ 0.55
CBX3-205ENST00000462165 FRMPD1Q5SYB0 1578 aa18.47■□□□□ 0.55
CBX3-205ENST00000462165 BCORL1Q5H9F3 1711 aa18.46■□□□□ 0.55
CBX3-205ENST00000462165 RAPGEF3O95398 923 aa18.46■□□□□ 0.55
CBX3-205ENST00000462165 CSRNP3Q8WYN3 585 aa18.44■□□□□ 0.54
CBX3-205ENST00000462165 NUP153P49790 1475 aaKnown RBP18.43■□□□□ 0.54
CBX3-205ENST00000462165 MADDQ8WXG6 1647 aa18.41■□□□□ 0.54
CBX3-205ENST00000462165 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.41■□□□□ 0.54
CBX3-205ENST00000462165 HNRNPUL2Q1KMD3 747 aaKnown RBP18.41■□□□□ 0.54
CBX3-205ENST00000462165 RICTORQ6R327 1708 aa18.4■□□□□ 0.54
CBX3-205ENST00000462165 FBXO41Q8TF61 875 aa18.39■□□□□ 0.53
CBX3-205ENST00000462165 ARHGEF40Q8TER5 1519 aa18.39■□□□□ 0.53
CBX3-205ENST00000462165 PCF11O94913 1555 aaKnown RBP18.37■□□□□ 0.53
CBX3-205ENST00000462165 DENND4BO75064 1496 aaPredicted RBP18.36■□□□□ 0.53
CBX3-205ENST00000462165 FHOD3Q2V2M9 1422 aa18.36■□□□□ 0.53
CBX3-205ENST00000462165 ARID4BQ4LE39 1312 aaPredicted RBP18.36■□□□□ 0.53
CBX3-205ENST00000462165 CFAP74Q9C0B2 1584 aa18.36■□□□□ 0.53
CBX3-205ENST00000462165 EEA1Q15075 1411 aa18.35■□□□□ 0.53
CBX3-205ENST00000462165 AKNAQ7Z591 1439 aa18.34■□□□□ 0.53
CBX3-205ENST00000462165 RIMS1Q86UR5 1692 aaKnown RBP18.34■□□□□ 0.53
CBX3-205ENST00000462165 LMTK3Q96Q04 1460 aa18.33■□□□□ 0.53
CBX3-205ENST00000462165 PLEKHD1A6NEE1 506 aa18.33■□□□□ 0.52
CBX3-205ENST00000462165 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.33■□□□□ 0.52
CBX3-205ENST00000462165 FANCAO15360 1455 aa18.32■□□□□ 0.52
CBX3-205ENST00000462165 ZMYM4Q5VZL5 1548 aa18.31■□□□□ 0.52
CBX3-205ENST00000462165 TTC37Q6PGP7 1564 aa18.3■□□□□ 0.52
CBX3-205ENST00000462165 RANGAP1P46060 587 aaPredicted RBP18.3■□□□□ 0.52
CBX3-205ENST00000462165 EFCAB5A4FU69 1503 aa18.29■□□□□ 0.52
CBX3-205ENST00000462165 SIGLEC1Q9BZZ2 1709 aa18.28■□□□□ 0.52
CBX3-205ENST00000462165 POGZQ7Z3K3 1410 aa18.26■□□□□ 0.51
CBX3-205ENST00000462165 ZFYVE16Q7Z3T8 1539 aa18.26■□□□□ 0.51
CBX3-205ENST00000462165 MAGI2Q86UL8 1455 aa18.26■□□□□ 0.51
CBX3-205ENST00000462165 YEATS2Q9ULM3 1422 aa18.23■□□□□ 0.51
CBX3-205ENST00000462165 HECW1Q76N89 1606 aa18.23■□□□□ 0.51
CBX3-205ENST00000462165 FER1L4A9Z1Z3 1794 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms