RNA–Protein interactions for RNA: ENST00000462165.2

CBX3-205, Transcript of chromobox 3, humanhuman

TSL 3

Gene CBX3, Length 949 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-205ENST00000462165 NISCHQ9Y2I1 1504 aa27.67■■■□□ 2.02
CBX3-205ENST00000462165 ABCC9O60706 1549 aa25.12■■□□□ 1.61
CBX3-205ENST00000462165 CCDC180Q9P1Z9 1646 aa24.97■■□□□ 1.59
CBX3-205ENST00000462165 AEBP2Q6ZN18 517 aaPredicted RBP24.22■■□□□ 1.47
CBX3-205ENST00000462165 RB1CC1Q8TDY2 1594 aa23.86■■□□□ 1.41
CBX3-205ENST00000462165 DNAJC5BQ9UF47 199 aa23.78■■□□□ 1.4
CBX3-205ENST00000462165 NACADO15069 1562 aa23.65■■□□□ 1.38
CBX3-205ENST00000462165 UNC13AQ9UPW8 1703 aa23.37■■□□□ 1.33
CBX3-205ENST00000462165 DCAF8L2P0C7V8 631 aa23.37■■□□□ 1.33
CBX3-205ENST00000462165 PABPN1Q86U42 306 aaKnown RBP eCLIP23.33■■□□□ 1.33
CBX3-205ENST00000462165 MYO15BQ96JP2 1530 aa23.26■■□□□ 1.31
CBX3-205ENST00000462165 BICRAQ9NZM4 1560 aa23.18■■□□□ 1.3
CBX3-205ENST00000462165 ZCCHC6Q5VYS8 1495 aaKnown RBP22.88■■□□□ 1.25
CBX3-205ENST00000462165 DCAF1Q9Y4B6 1507 aa22.87■■□□□ 1.25
CBX3-205ENST00000462165 SHROOM4Q9ULL8 1493 aa22.86■■□□□ 1.25
CBX3-205ENST00000462165 CHIC1Q5VXU3 224 aa22.78■■□□□ 1.24
CBX3-205ENST00000462165 CC2D2AQ9P2K1 1620 aa22.73■■□□□ 1.23
CBX3-205ENST00000462165 SCRIBQ14160 1630 aa22.68■■□□□ 1.22
CBX3-205ENST00000462165 CECR2Q9BXF3 1484 aa22.67■■□□□ 1.22
CBX3-205ENST00000462165 EIF4G1Q04637 1599 aaKnown RBP22.63■■□□□ 1.21
CBX3-205ENST00000462165 DNAJC5Q9H3Z4 198 aa22.02■■□□□ 1.12
CBX3-205ENST00000462165 NCAPD3P42695 1498 aa21.82■■□□□ 1.08
CBX3-205ENST00000462165 CUX2O14529 1486 aa21.8■■□□□ 1.08
CBX3-205ENST00000462165 ERCC6Q03468 1493 aa21.71■■□□□ 1.07
CBX3-205ENST00000462165 ATAD2BQ9ULI0 1458 aa21.71■■□□□ 1.07
CBX3-205ENST00000462165 SMARCA2P51531 1590 aa21.65■■□□□ 1.06
CBX3-205ENST00000462165 HMGXB3Q12766 1538 aa21.65■■□□□ 1.06
CBX3-205ENST00000462165 SMARCA4P51532 1647 aa21.65■■□□□ 1.06
CBX3-205ENST00000462165 NESP48681 1621 aa21.52■■□□□ 1.04
CBX3-205ENST00000462165 BAZ1AQ9NRL2 1556 aaPredicted RBP21.49■■□□□ 1.03
CBX3-205ENST00000462165 BAZ1BQ9UIG0 1483 aaKnown RBP21.47■■□□□ 1.03
CBX3-205ENST00000462165 PEG3Q9GZU2 1588 aa21.46■■□□□ 1.03
CBX3-205ENST00000462165 THOC2Q8NI27 1593 aaKnown RBP21.4■■□□□ 1.02
CBX3-205ENST00000462165 LAMC3Q9Y6N6 1575 aa21.39■■□□□ 1.01
CBX3-205ENST00000462165 MROH2BQ7Z745 1585 aa21.3■■□□□ 1
CBX3-205ENST00000462165 KIF21AQ7Z4S6 1674 aa21.29■■□□□ 1
CBX3-205ENST00000462165 PDS5BQ9NTI5 1447 aa21.24■□□□□ 0.99
CBX3-205ENST00000462165 CADPSQ9ULU8 1353 aa21.12■□□□□ 0.97
CBX3-205ENST00000462165 MRC2Q9UBG0 1479 aa21.07■□□□□ 0.96
CBX3-205ENST00000462165 WIZO95785 1651 aa21.05■□□□□ 0.96
CBX3-205ENST00000462165 WDR62O43379 1518 aa21.04■□□□□ 0.96
CBX3-205ENST00000462165 CEP164Q9UPV0 1460 aa20.94■□□□□ 0.94
CBX3-205ENST00000462165 TRIM41Q8WV44 630 aa20.92■□□□□ 0.94
CBX3-205ENST00000462165 FANCD2Q9BXW9 1451 aa20.88■□□□□ 0.93
CBX3-205ENST00000462165 CFTRP13569 1480 aa20.85■□□□□ 0.93
CBX3-205ENST00000462165 TOP2AP11388 1531 aaKnown RBP20.77■□□□□ 0.92
CBX3-205ENST00000462165 RSF1Q96T23 1441 aaPredicted RBP20.77■□□□□ 0.91
CBX3-205ENST00000462165 URB2Q14146 1524 aaKnown RBP20.74■□□□□ 0.91
CBX3-205ENST00000462165 OSCARQ8IYS5 282 aa20.72■□□□□ 0.91
CBX3-205ENST00000462165 PRDM2Q13029 1718 aa20.69■□□□□ 0.9
CBX3-205ENST00000462165 SENP3Q9H4L4 574 aaPredicted RBP20.62■□□□□ 0.89
CBX3-205ENST00000462165 IFT140Q96RY7 1462 aa20.53■□□□□ 0.88
CBX3-205ENST00000462165 RIMBP3CA6NJZ7 1639 aa20.53■□□□□ 0.88
CBX3-205ENST00000462165 RIMBP3BA6NNM3 1639 aa20.53■□□□□ 0.88
CBX3-205ENST00000462165 RIMBP3Q9UFD9 1639 aa20.53■□□□□ 0.88
CBX3-205ENST00000462165 CCDC88BA6NC98 1476 aa20.51■□□□□ 0.87
CBX3-205ENST00000462165 ZNF608Q9ULD9 1512 aaPredicted RBP20.5■□□□□ 0.87
CBX3-205ENST00000462165 TOPBP1Q92547 1522 aa20.47■□□□□ 0.87
CBX3-205ENST00000462165 ABCC8Q09428 1581 aa20.43■□□□□ 0.86
CBX3-205ENST00000462165 ARHGEF11O15085 1522 aa20.42■□□□□ 0.86
CBX3-205ENST00000462165 EIF4G3O43432 1585 aaKnown RBP20.41■□□□□ 0.86
CBX3-205ENST00000462165 DNMBPQ6XZF7 1577 aa20.39■□□□□ 0.85
CBX3-205ENST00000462165 PHF23Q9BUL5 403 aaPredicted RBP20.37■□□□□ 0.85
CBX3-205ENST00000462165 TARBP1Q13395 1621 aaKnown RBP20.34■□□□□ 0.85
CBX3-205ENST00000462165 CHD1O14646 1710 aa20.33■□□□□ 0.84
CBX3-205ENST00000462165 AQRO60306 1485 aaKnown RBP eCLIP20.28■□□□□ 0.849e-7■■■■□ 20.2
CBX3-205ENST00000462165 POLA1P09884 1462 aaPredicted RBP20.24■□□□□ 0.83
CBX3-205ENST00000462165 CYB5RLQ6IPT4 315 aa20.23■□□□□ 0.83
CBX3-205ENST00000462165 ARAP1Q96P48 1450 aa20.19■□□□□ 0.82
CBX3-205ENST00000462165 FBLN2P98095 1184 aa20.16■□□□□ 0.82
CBX3-205ENST00000462165 RAD54L2Q9Y4B4 1467 aa20.16■□□□□ 0.82
CBX3-205ENST00000462165 WDR97A6NE52 1622 aa20.14■□□□□ 0.81
CBX3-205ENST00000462165 SOGA1O94964 1423 aa20.13■□□□□ 0.81
CBX3-205ENST00000462165 TDRD9Q8NDG6 1382 aaKnown RBP20.1■□□□□ 0.81
CBX3-205ENST00000462165 SNAPC4Q5SXM2 1469 aa20.08■□□□□ 0.81
CBX3-205ENST00000462165 FGD5Q6ZNL6 1462 aa20.08■□□□□ 0.81
CBX3-205ENST00000462165 TRHP20396 242 aaPredicted RBP20.08■□□□□ 0.81
CBX3-205ENST00000462165 CLASP1Q7Z460 1538 aa20.07■□□□□ 0.8
CBX3-205ENST00000462165 MAGI1Q96QZ7 1491 aaPredicted RBP20.04■□□□□ 0.8
CBX3-205ENST00000462165 SYNJ1O43426 1573 aa20.04■□□□□ 0.8
CBX3-205ENST00000462165 CUX1P39880 1505 aa20.03■□□□□ 0.8
CBX3-205ENST00000462165 GRIN2BQ13224 1484 aa20■□□□□ 0.79
CBX3-205ENST00000462165 CHMP7Q8WUX9 453 aaPredicted RBP20■□□□□ 0.79
CBX3-205ENST00000462165 SYNJ2O15056 1496 aa19.96■□□□□ 0.79
CBX3-205ENST00000462165 PBRM1Q86U86 1689 aa19.95■□□□□ 0.78
CBX3-205ENST00000462165 GAPVD1Q14C86 1478 aa19.9■□□□□ 0.78
CBX3-205ENST00000462165 ABCA5Q8WWZ7 1642 aa19.87■□□□□ 0.77
CBX3-205ENST00000462165 ABCA10Q8WWZ4 1543 aa19.86■□□□□ 0.77
CBX3-205ENST00000462165 GRIN2AQ12879 1464 aa19.75■□□□□ 0.75
CBX3-205ENST00000462165 ADAMTS12P58397 1594 aa19.72■□□□□ 0.75
CBX3-205ENST00000462165 ERCC6L2Q5T890 1561 aa19.72■□□□□ 0.75
CBX3-205ENST00000462165 NUP160Q12769 1436 aa19.7■□□□□ 0.74
CBX3-205ENST00000462165 WRNQ14191 1432 aaPredicted RBP eCLIP19.7■□□□□ 0.74
CBX3-205ENST00000462165 CEP170Q5SW79 1584 aa19.7■□□□□ 0.74
CBX3-205ENST00000462165 BIVM-ERCC5R4GMW8 1640 aa19.69■□□□□ 0.74
CBX3-205ENST00000462165 TOP2BQ02880 1626 aa19.66■□□□□ 0.74
CBX3-205ENST00000462165 SHROOM2Q13796 1616 aa19.66■□□□□ 0.74
CBX3-205ENST00000462165 FHAD1B1AJZ9 1412 aa19.64■□□□□ 0.73
CBX3-205ENST00000462165 ERICH3Q5RHP9 1530 aa19.61■□□□□ 0.73
CBX3-205ENST00000462165 SUPT5HO00267 1087 aaKnown RBP19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms