RNA–Protein interactions for RNA: ENST00000445902.2

VPS52-212, Transcript of VPS52, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS52, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-212ENST00000445902 PRXQ9BXM0 1461 aa19.55■□□□□ 0.72
VPS52-212ENST00000445902 ERICH3Q5RHP9 1530 aa19.55■□□□□ 0.72
VPS52-212ENST00000445902 TOP2BQ02880 1626 aa19.54■□□□□ 0.72
VPS52-212ENST00000445902 FAM50AQ14320 339 aaKnown RBP19.54■□□□□ 0.72
VPS52-212ENST00000445902 SETD5Q9C0A6 1442 aa19.53■□□□□ 0.72
VPS52-212ENST00000445902 HNRNPUQ00839 825 aaKnown RBP eCLIP19.53■□□□□ 0.72
VPS52-212ENST00000445902 ARHGAP35Q9NRY4 1499 aa19.49■□□□□ 0.71
VPS52-212ENST00000445902 DEKP35659 375 aaKnown RBP19.46■□□□□ 0.71
VPS52-212ENST00000445902 PEG3Q9GZU2 1588 aa19.45■□□□□ 0.7
VPS52-212ENST00000445902 BIVM-ERCC5R4GMW8 1640 aa19.41■□□□□ 0.7
VPS52-212ENST00000445902 PHLDB1Q86UU1 1377 aa19.41■□□□□ 0.7
VPS52-212ENST00000445902 PRKCSHP14314 528 aaPredicted RBP19.4■□□□□ 0.7
VPS52-212ENST00000445902 ATAD2BQ9ULI0 1458 aa19.4■□□□□ 0.7
VPS52-212ENST00000445902 NBR1Q14596 966 aa19.39■□□□□ 0.69
VPS52-212ENST00000445902 ATP1B4Q9UN42 357 aaPredicted RBP19.39■□□□□ 0.69
VPS52-212ENST00000445902 TIAM1Q13009 1591 aa19.37■□□□□ 0.69
VPS52-212ENST00000445902 B4GALNT3Q6L9W6 998 aa19.36■□□□□ 0.69
VPS52-212ENST00000445902 BICRAQ9NZM4 1560 aa19.36■□□□□ 0.69
VPS52-212ENST00000445902 TONSLQ96HA7 1378 aa19.34■□□□□ 0.69
VPS52-212ENST00000445902 KIF27Q86VH2 1401 aa19.34■□□□□ 0.69
VPS52-212ENST00000445902 TIMELESSQ9UNS1 1208 aa19.32■□□□□ 0.68
VPS52-212ENST00000445902 PPP4R2Q9NY27 417 aa19.32■□□□□ 0.68
VPS52-212ENST00000445902 LRRC9Q6ZRR7 1453 aa19.31■□□□□ 0.68
VPS52-212ENST00000445902 P3H3Q8IVL6 736 aa19.31■□□□□ 0.68
VPS52-212ENST00000445902 CUX1P39880 1505 aa19.29■□□□□ 0.68
VPS52-212ENST00000445902 PAK3O75914 559 aaPredicted RBP19.28■□□□□ 0.68
VPS52-212ENST00000445902 CCDC184Q52MB2 194 aa19.28■□□□□ 0.68
VPS52-212ENST00000445902 MYT1LQ9UL68 1186 aa19.26■□□□□ 0.67
VPS52-212ENST00000445902 NOP58Q9Y2X3 529 aaKnown RBP19.25■□□□□ 0.67
VPS52-212ENST00000445902 FAM9BQ8IZU0 186 aa19.23■□□□□ 0.67
VPS52-212ENST00000445902 ANO8Q9HCE9 1232 aaPredicted RBP19.21■□□□□ 0.67
VPS52-212ENST00000445902 WASHC2AQ641Q2 1341 aa19.18■□□□□ 0.66
VPS52-212ENST00000445902 MAP3K1Q13233 1512 aa19.17■□□□□ 0.66
VPS52-212ENST00000445902 ERICH6BQ5W0A0 696 aa19.16■□□□□ 0.66
VPS52-212ENST00000445902 HSPA5P11021 654 aaKnown RBP19.15■□□□□ 0.66
VPS52-212ENST00000445902 PCF11O94913 1555 aaKnown RBP19.15■□□□□ 0.66
VPS52-212ENST00000445902 CCDC18Q5T9S5 1454 aa19.13■□□□□ 0.65
VPS52-212ENST00000445902 CFAP43Q8NDM7 1665 aa19.12■□□□□ 0.65
VPS52-212ENST00000445902 MRS2Q9HD23 443 aa19.11■□□□□ 0.65
VPS52-212ENST00000445902 CNGB1Q14028 1251 aaPredicted RBP19.11■□□□□ 0.65
VPS52-212ENST00000445902 SENP3-EIF4A1A0A087X0R7 540 aa19.1■□□□□ 0.65
VPS52-212ENST00000445902 FHAD1B1AJZ9 1412 aa19.1■□□□□ 0.65
VPS52-212ENST00000445902 IGF1RP08069 1367 aa19.1■□□□□ 0.65
VPS52-212ENST00000445902 SALL2Q9Y467 1007 aaPredicted RBP19.08■□□□□ 0.65
VPS52-212ENST00000445902 RTN4Q9NQC3 1192 aaKnown RBP19.08■□□□□ 0.64
VPS52-212ENST00000445902 RTL5Q5HYW3 569 aaPredicted RBP19.07■□□□□ 0.64
VPS52-212ENST00000445902 FHOD3Q2V2M9 1422 aa19.06■□□□□ 0.64
VPS52-212ENST00000445902 CARMIL1Q5VZK9 1371 aa19.06■□□□□ 0.64
VPS52-212ENST00000445902 UACAQ9BZF9 1416 aa19.05■□□□□ 0.64
VPS52-212ENST00000445902 ANP32AP39687 249 aaKnown RBP19.05■□□□□ 0.64
VPS52-212ENST00000445902 IL27Q8NEV9 243 aa19.05■□□□□ 0.64
VPS52-212ENST00000445902 AQRO60306 1485 aaKnown RBP eCLIP19.05■□□□□ 0.643e-7■■■■■ 29.5
VPS52-212ENST00000445902 PTPRKQ15262 1439 aa19.04■□□□□ 0.64
VPS52-212ENST00000445902 KDM5BQ9UGL1 1544 aa19.04■□□□□ 0.64
VPS52-212ENST00000445902 C11orf95C9JLR9 678 aaPredicted RBP19.04■□□□□ 0.64
VPS52-212ENST00000445902 PRKRIP1Q9H875 184 aaPredicted RBP19.04■□□□□ 0.64
VPS52-212ENST00000445902 ZBED9Q6R2W3 1325 aa19.03■□□□□ 0.64
VPS52-212ENST00000445902 AKNAQ7Z591 1439 aa19.03■□□□□ 0.64
VPS52-212ENST00000445902 CNTLNQ9NXG0 1405 aa19.02■□□□□ 0.64
VPS52-212ENST00000445902 CCDC136Q96JN2 1154 aa19.02■□□□□ 0.64
VPS52-212ENST00000445902 EIF4G2P78344 907 aaKnown RBP eCLIP19.02■□□□□ 0.631e-12■■■■□ 25
VPS52-212ENST00000445902 IPO9Q96P70 1041 aaKnown RBP19.02■□□□□ 0.63
VPS52-212ENST00000445902 FGD6Q6ZV73 1430 aa19.01■□□□□ 0.63
VPS52-212ENST00000445902 ZBTB47Q9UFB7 747 aaPredicted RBP19.01■□□□□ 0.63
VPS52-212ENST00000445902 PTPN23Q9H3S7 1636 aa19.01■□□□□ 0.63
VPS52-212ENST00000445902 HFM1A2PYH4 1435 aa18.97■□□□□ 0.63
VPS52-212ENST00000445902 NPM2Q86SE8 214 aaKnown RBP18.97■□□□□ 0.63
VPS52-212ENST00000445902 RRP7BPQ9NSQ0 103 aa18.96■□□□□ 0.63
VPS52-212ENST00000445902 NCOA2Q15596 1464 aa18.96■□□□□ 0.63
VPS52-212ENST00000445902 CHIC2Q9UKJ5 165 aa18.95■□□□□ 0.62
VPS52-212ENST00000445902 NAIPQ13075 1403 aa18.95■□□□□ 0.62
VPS52-212ENST00000445902 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.94■□□□□ 0.62
VPS52-212ENST00000445902 FOXD1Q16676 465 aa18.92■□□□□ 0.62
VPS52-212ENST00000445902 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.92■□□□□ 0.62
VPS52-212ENST00000445902 CCDC7Q96M83 1385 aa18.92■□□□□ 0.62
VPS52-212ENST00000445902 LAS1LQ9Y4W2 734 aaKnown RBP18.92■□□□□ 0.62
VPS52-212ENST00000445902 MTUS2Q5JR59 1369 aa18.92■□□□□ 0.62
VPS52-212ENST00000445902 FYCO1Q9BQS8 1478 aa18.91■□□□□ 0.62
VPS52-212ENST00000445902 L3MBTL2Q969R5 705 aa18.89■□□□□ 0.61
VPS52-212ENST00000445902 CFTRP13569 1480 aa18.89■□□□□ 0.61
VPS52-212ENST00000445902 POLR3GLQ9BT43 218 aa18.88■□□□□ 0.61
VPS52-212ENST00000445902 FMN1Q68DA7 1419 aa18.88■□□□□ 0.61
VPS52-212ENST00000445902 CASKIN1Q8WXD9 1431 aa18.88■□□□□ 0.61
VPS52-212ENST00000445902 FGD5Q6ZNL6 1462 aa18.87■□□□□ 0.61
VPS52-212ENST00000445902 NCOA1Q15788 1441 aa18.86■□□□□ 0.61
VPS52-212ENST00000445902 NUDCQ9Y266 331 aa18.85■□□□□ 0.61
VPS52-212ENST00000445902 SMG6Q86US8 1419 aaKnown RBP18.84■□□□□ 0.61
VPS52-212ENST00000445902 NEFMP07197 916 aa18.84■□□□□ 0.61
VPS52-212ENST00000445902 KIF7Q2M1P5 1343 aa18.83■□□□□ 0.61
VPS52-212ENST00000445902 DENND4BO75064 1496 aaPredicted RBP18.82■□□□□ 0.6
VPS52-212ENST00000445902 NBPF8Q3BBV2 869 aa18.81■□□□□ 0.6
VPS52-212ENST00000445902 KDM6BO15054 1643 aa18.79■□□□□ 0.6
VPS52-212ENST00000445902 MYOM3Q5VTT5 1437 aa18.78■□□□□ 0.6
VPS52-212ENST00000445902 HMGXB3Q12766 1538 aa18.78■□□□□ 0.6
VPS52-212ENST00000445902 NCAPD3P42695 1498 aa18.77■□□□□ 0.6
VPS52-212ENST00000445902 MPHOSPH9Q99550 1183 aa18.77■□□□□ 0.6
VPS52-212ENST00000445902 LRRIQ1Q96JM4 1722 aa18.77■□□□□ 0.59
VPS52-212ENST00000445902 RNF123Q5XPI4 1314 aa18.76■□□□□ 0.59
VPS52-212ENST00000445902 EFCAB5A4FU69 1503 aa18.74■□□□□ 0.59
VPS52-212ENST00000445902 SNAPC4Q5SXM2 1469 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms