RNA–Protein interactions for RNA: ENST00000445902.2

VPS52-212, Transcript of VPS52, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS52, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-212ENST00000445902 NISCHQ9Y2I1 1504 aa26.53■■□□□ 1.84
VPS52-212ENST00000445902 SHROOM4Q9ULL8 1493 aa23.73■■□□□ 1.39
VPS52-212ENST00000445902 HRCP23327 699 aa23.6■■□□□ 1.37
VPS52-212ENST00000445902 SUPT5HO00267 1087 aaKnown RBP23.58■■□□□ 1.37
VPS52-212ENST00000445902 PPARGC1BQ86YN6 1023 aaKnown RBP23.31■■□□□ 1.32
VPS52-212ENST00000445902 PCGF6Q9BYE7 350 aa23.29■■□□□ 1.32
VPS52-212ENST00000445902 MYO15BQ96JP2 1530 aa23.24■■□□□ 1.31
VPS52-212ENST00000445902 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
VPS52-212ENST00000445902 LOC105371045A0A1W2PR82 267 aa22.62■■□□□ 1.21
VPS52-212ENST00000445902 ZCCHC6Q5VYS8 1495 aaKnown RBP22.55■■□□□ 1.2
VPS52-212ENST00000445902 DCAF1Q9Y4B6 1507 aa22.54■■□□□ 1.2
VPS52-212ENST00000445902 PELP1Q8IZL8 1130 aaKnown RBP22.48■■□□□ 1.19
VPS52-212ENST00000445902 TRIM26Q12899 539 aaPredicted RBP22.42■■□□□ 1.18
VPS52-212ENST00000445902 DCAF8L2P0C7V8 631 aa22.41■■□□□ 1.18
VPS52-212ENST00000445902 SCAF1Q9H7N4 1312 aaKnown RBP22.36■■□□□ 1.17
VPS52-212ENST00000445902 CCDC180Q9P1Z9 1646 aa22.3■■□□□ 1.16
VPS52-212ENST00000445902 ZEB1P37275 1124 aaPredicted RBP22.12■■□□□ 1.13
VPS52-212ENST00000445902 EHMT2Q96KQ7 1210 aa21.9■■□□□ 1.1
VPS52-212ENST00000445902 FAM9AQ8IZU1 332 aaPredicted RBP21.86■■□□□ 1.09
VPS52-212ENST00000445902 NEUROD1Q13562 356 aa21.79■■□□□ 1.08
VPS52-212ENST00000445902 ACIN1Q9UKV3 1341 aaKnown RBP21.77■■□□□ 1.08
VPS52-212ENST00000445902 TRIM41Q8WV44 630 aa21.71■■□□□ 1.07
VPS52-212ENST00000445902 GTF3C3Q9Y5Q9 886 aa21.67■■□□□ 1.06
VPS52-212ENST00000445902 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.63■■□□□ 1.05
VPS52-212ENST00000445902 CCER1Q8TC90 406 aaPredicted RBP21.54■■□□□ 1.04
VPS52-212ENST00000445902 MYT1Q01538 1121 aa21.5■■□□□ 1.03
VPS52-212ENST00000445902 DIEXFQ68CQ4 756 aaKnown RBP21.49■■□□□ 1.03
VPS52-212ENST00000445902 CENPBP07199 599 aaPredicted RBP21.48■■□□□ 1.03
VPS52-212ENST00000445902 ABCC9O60706 1549 aa21.45■■□□□ 1.02
VPS52-212ENST00000445902 RB1CC1Q8TDY2 1594 aa21.39■■□□□ 1.01
VPS52-212ENST00000445902 RSF1Q96T23 1441 aaPredicted RBP21.37■■□□□ 1.01
VPS52-212ENST00000445902 TTBK1Q5TCY1 1321 aaPredicted RBP21.35■■□□□ 1.01
VPS52-212ENST00000445902 YTHDC1Q96MU7 727 aaKnown RBP21.29■■□□□ 1
VPS52-212ENST00000445902 SCRIBQ14160 1630 aa21.19■□□□□ 0.98
VPS52-212ENST00000445902 ZNF316A6NFI3 1004 aaPredicted RBP21.04■□□□□ 0.96
VPS52-212ENST00000445902 MIER1Q8N108 512 aa20.98■□□□□ 0.95
VPS52-212ENST00000445902 CECR2Q9BXF3 1484 aa20.87■□□□□ 0.93
VPS52-212ENST00000445902 MROH2BQ7Z745 1585 aa20.81■□□□□ 0.92
VPS52-212ENST00000445902 WIZO95785 1651 aa20.8■□□□□ 0.92
VPS52-212ENST00000445902 CEP162Q5TB80 1403 aa20.79■□□□□ 0.92
VPS52-212ENST00000445902 WRNQ14191 1432 aaPredicted RBP eCLIP20.76■□□□□ 0.91
VPS52-212ENST00000445902 HNRNPUL2Q1KMD3 747 aaKnown RBP20.74■□□□□ 0.91
VPS52-212ENST00000445902 ABCC8Q09428 1581 aa20.69■□□□□ 0.9
VPS52-212ENST00000445902 CCDC88BA6NC98 1476 aa20.66■□□□□ 0.9
VPS52-212ENST00000445902 UBTFP17480 764 aaKnown RBP20.66■□□□□ 0.9
VPS52-212ENST00000445902 EIF4G1Q04637 1599 aaKnown RBP20.61■□□□□ 0.89
VPS52-212ENST00000445902 SOGA1O94964 1423 aa20.6■□□□□ 0.89
VPS52-212ENST00000445902 SUPT16HQ9Y5B9 1047 aaKnown RBP20.6■□□□□ 0.89
VPS52-212ENST00000445902 TNIKQ9UKE5 1360 aa20.56■□□□□ 0.88
VPS52-212ENST00000445902 BAZ1AQ9NRL2 1556 aaPredicted RBP20.52■□□□□ 0.88
VPS52-212ENST00000445902 RUSC2Q8N2Y8 1516 aa20.51■□□□□ 0.87
VPS52-212ENST00000445902 TSHZ2Q9NRE2 1034 aa20.49■□□□□ 0.87
VPS52-212ENST00000445902 CSRNP3Q8WYN3 585 aa20.47■□□□□ 0.87
VPS52-212ENST00000445902 ANP32EQ9BTT0 268 aa20.45■□□□□ 0.86
VPS52-212ENST00000445902 BCL11AQ9H165 835 aa20.4■□□□□ 0.86
VPS52-212ENST00000445902 NACADO15069 1562 aa20.38■□□□□ 0.85
VPS52-212ENST00000445902 RANGAP1P46060 587 aaPredicted RBP20.37■□□□□ 0.85
VPS52-212ENST00000445902 GOLGA3Q08378 1498 aa20.35■□□□□ 0.85
VPS52-212ENST00000445902 BCANQ96GW7 911 aa20.34■□□□□ 0.85
VPS52-212ENST00000445902 CLSPNQ9HAW4 1339 aa20.33■□□□□ 0.85
VPS52-212ENST00000445902 APLP2Q06481 763 aa20.28■□□□□ 0.84
VPS52-212ENST00000445902 EEA1Q15075 1411 aa20.27■□□□□ 0.83
VPS52-212ENST00000445902 TOP2AP11388 1531 aaKnown RBP20.26■□□□□ 0.83
VPS52-212ENST00000445902 SMARCA2P51531 1590 aa20.25■□□□□ 0.83
VPS52-212ENST00000445902 KCNH8Q96L42 1107 aa20.25■□□□□ 0.83
VPS52-212ENST00000445902 CLIP1P30622 1438 aa20.23■□□□□ 0.83
VPS52-212ENST00000445902 DHX57Q6P158 1386 aaKnown RBP20.18■□□□□ 0.82
VPS52-212ENST00000445902 VPS8Q8N3P4 1428 aa20.16■□□□□ 0.82
VPS52-212ENST00000445902 FKBP8Q14318 412 aa20.13■□□□□ 0.81
VPS52-212ENST00000445902 CEP164Q9UPV0 1460 aa20.12■□□□□ 0.81
VPS52-212ENST00000445902 SMARCA4P51532 1647 aa20.08■□□□□ 0.81
VPS52-212ENST00000445902 KIF21BO75037 1637 aa20.04■□□□□ 0.8
VPS52-212ENST00000445902 RAPGEF2Q9Y4G8 1499 aa20.02■□□□□ 0.8
VPS52-212ENST00000445902 ITGAEP38570 1179 aa20.01■□□□□ 0.79
VPS52-212ENST00000445902 RBM19Q9Y4C8 960 aaKnown RBP20.01■□□□□ 0.79
VPS52-212ENST00000445902 SYNJ1O43426 1573 aa19.99■□□□□ 0.79
VPS52-212ENST00000445902 KANK4Q5T7N3 995 aaPredicted RBP19.96■□□□□ 0.79
VPS52-212ENST00000445902 DDX10Q13206 875 aaKnown RBP19.93■□□□□ 0.78
VPS52-212ENST00000445902 NEFLP07196 543 aa19.91■□□□□ 0.78
VPS52-212ENST00000445902 TRIM52Q96A61 297 aa19.9■□□□□ 0.78
VPS52-212ENST00000445902 BAZ1BQ9UIG0 1483 aaKnown RBP19.89■□□□□ 0.77
VPS52-212ENST00000445902 MSH5O43196 834 aa19.85■□□□□ 0.77
VPS52-212ENST00000445902 HIRIP3Q9BW71 556 aaPredicted RBP19.83■□□□□ 0.77
VPS52-212ENST00000445902 ARAP1Q96P48 1450 aa19.78■□□□□ 0.76
VPS52-212ENST00000445902 RRBP1Q9P2E9 1410 aaKnown RBP19.75■□□□□ 0.75
VPS52-212ENST00000445902 SIN3AQ96ST3 1273 aa19.74■□□□□ 0.75
VPS52-212ENST00000445902 UNC13AQ9UPW8 1703 aa19.73■□□□□ 0.75
VPS52-212ENST00000445902 CCNB3Q8WWL7 1395 aa19.73■□□□□ 0.75
VPS52-212ENST00000445902 WDR97A6NE52 1622 aa19.73■□□□□ 0.75
VPS52-212ENST00000445902 RAB3GAP2Q9H2M9 1393 aa19.73■□□□□ 0.75
VPS52-212ENST00000445902 MAPKBP1O60336 1514 aa19.71■□□□□ 0.75
VPS52-212ENST00000445902 IRX6P78412 446 aaPredicted RBP19.71■□□□□ 0.75
VPS52-212ENST00000445902 ERICH6Q7L0X2 663 aa19.69■□□□□ 0.74
VPS52-212ENST00000445902 PABPN1Q86U42 306 aaKnown RBP eCLIP19.68■□□□□ 0.74
VPS52-212ENST00000445902 CUX2O14529 1486 aa19.68■□□□□ 0.74
VPS52-212ENST00000445902 PPP1R15AO75807 674 aaPredicted RBP19.67■□□□□ 0.74
VPS52-212ENST00000445902 ANP32CO43423 234 aa19.65■□□□□ 0.74
VPS52-212ENST00000445902 CDK11AQ9UQ88 783 aaPredicted RBP19.58■□□□□ 0.72
VPS52-212ENST00000445902 CCER2I3L3R5 266 aa19.57■□□□□ 0.72
VPS52-212ENST00000445902 FANCIQ9NVI1 1328 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 104.3 ms