RNA–Protein interactions for RNA: ENST00000438773.2

TRAPPC9-202, Transcript of trafficking protein particle complex 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAPPC9, Length 4,297 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-202ENST00000438773 HMGXB3Q12766 1538 aa16.36■□□□□ 0.21
TRAPPC9-202ENST00000438773 PEG3Q9GZU2 1588 aa16.35■□□□□ 0.21
TRAPPC9-202ENST00000438773 FGD5Q6ZNL6 1462 aa16.33■□□□□ 0.21
TRAPPC9-202ENST00000438773 CC2D2AQ9P2K1 1620 aa16.33■□□□□ 0.2
TRAPPC9-202ENST00000438773 SYNJ1O43426 1573 aa16.32■□□□□ 0.2
TRAPPC9-202ENST00000438773 RRP7BPQ9NSQ0 103 aa16.32■□□□□ 0.2
TRAPPC9-202ENST00000438773 IGF1RP08069 1367 aa16.31■□□□□ 0.2
TRAPPC9-202ENST00000438773 PLEKHD1A6NEE1 506 aa16.31■□□□□ 0.2
TRAPPC9-202ENST00000438773 TONSLQ96HA7 1378 aa16.3■□□□□ 0.2
TRAPPC9-202ENST00000438773 CCNB3Q8WWL7 1395 aa16.3■□□□□ 0.2
TRAPPC9-202ENST00000438773 TSPY4P0CV99 314 aa16.28■□□□□ 0.2
TRAPPC9-202ENST00000438773 TSPY10P0CW01 314 aa16.28■□□□□ 0.2
TRAPPC9-202ENST00000438773 RAD54L2Q9Y4B4 1467 aa16.28■□□□□ 0.2
TRAPPC9-202ENST00000438773 NESP48681 1621 aa16.27■□□□□ 0.19
TRAPPC9-202ENST00000438773 KCNH8Q96L42 1107 aa16.24■□□□□ 0.19
TRAPPC9-202ENST00000438773 FHOD3Q2V2M9 1422 aa16.23■□□□□ 0.19
TRAPPC9-202ENST00000438773 CFDP1Q9UEE9 299 aaPredicted RBP16.23■□□□□ 0.19
TRAPPC9-202ENST00000438773 DNAJC5BQ9UF47 199 aa16.22■□□□□ 0.19
TRAPPC9-202ENST00000438773 ANP32CO43423 234 aa16.21■□□□□ 0.19
TRAPPC9-202ENST00000438773 FMN1Q68DA7 1419 aa16.2■□□□□ 0.18
TRAPPC9-202ENST00000438773 CUX1P39880 1505 aa16.19■□□□□ 0.18
TRAPPC9-202ENST00000438773 TRHP20396 242 aaPredicted RBP16.18■□□□□ 0.18
TRAPPC9-202ENST00000438773 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.17■□□□□ 0.185e-6■■■■□ 19.5
TRAPPC9-202ENST00000438773 TOP2BQ02880 1626 aa16.17■□□□□ 0.18
TRAPPC9-202ENST00000438773 GAPVD1Q14C86 1478 aa16.16■□□□□ 0.18
TRAPPC9-202ENST00000438773 SLC4A1APQ9BWU0 796 aaKnown RBP16.15■□□□□ 0.18
TRAPPC9-202ENST00000438773 ESF1Q9H501 851 aaKnown RBP16.15■□□□□ 0.18
TRAPPC9-202ENST00000438773 DDX10Q13206 875 aaKnown RBP16.14■□□□□ 0.17
TRAPPC9-202ENST00000438773 ARHGAP35Q9NRY4 1499 aa16.12■□□□□ 0.17
TRAPPC9-202ENST00000438773 SIN3AQ96ST3 1273 aa16.11■□□□□ 0.17
TRAPPC9-202ENST00000438773 HIRIP3Q9BW71 556 aaPredicted RBP16.11■□□□□ 0.17
TRAPPC9-202ENST00000438773 KIF21BO75037 1637 aa16.1■□□□□ 0.17
TRAPPC9-202ENST00000438773 CARMIL2Q6F5E8 1435 aa16.1■□□□□ 0.17
TRAPPC9-202ENST00000438773 CLSPNQ9HAW4 1339 aa16.09■□□□□ 0.17
TRAPPC9-202ENST00000438773 JPH4Q96JJ6 628 aa16.09■□□□□ 0.17
TRAPPC9-202ENST00000438773 PRXQ9BXM0 1461 aa16.09■□□□□ 0.17
TRAPPC9-202ENST00000438773 TOPBP1Q92547 1522 aa16.09■□□□□ 0.17
TRAPPC9-202ENST00000438773 AQRO60306 1485 aaKnown RBP eCLIP16.08■□□□□ 0.174e-6■■■■□ 26.3
TRAPPC9-202ENST00000438773 POLA1P09884 1462 aaPredicted RBP16.06■□□□□ 0.16
TRAPPC9-202ENST00000438773 SUPT16HQ9Y5B9 1047 aaKnown RBP16.06■□□□□ 0.16
TRAPPC9-202ENST00000438773 ERICH3Q5RHP9 1530 aa16.05■□□□□ 0.16
TRAPPC9-202ENST00000438773 SETD5Q9C0A6 1442 aa16.04■□□□□ 0.16
TRAPPC9-202ENST00000438773 KDM2AQ9Y2K7 1162 aa16.03■□□□□ 0.16
TRAPPC9-202ENST00000438773 PLPPR3Q6T4P5 718 aa16.03■□□□□ 0.16
TRAPPC9-202ENST00000438773 RAB3GAP2Q9H2M9 1393 aa16.01■□□□□ 0.15
TRAPPC9-202ENST00000438773 ARAP1Q96P48 1450 aa16.01■□□□□ 0.15
TRAPPC9-202ENST00000438773 CHGAP10645 457 aaKnown RBP16■□□□□ 0.15
TRAPPC9-202ENST00000438773 DHX57Q6P158 1386 aaKnown RBP16■□□□□ 0.15
TRAPPC9-202ENST00000438773 DNMBPQ6XZF7 1577 aa15.97■□□□□ 0.15
TRAPPC9-202ENST00000438773 OSCARQ8IYS5 282 aa15.97■□□□□ 0.15
TRAPPC9-202ENST00000438773 MRC2Q9UBG0 1479 aa15.95■□□□□ 0.14
TRAPPC9-202ENST00000438773 EIF4G2P78344 907 aaKnown RBP eCLIP15.95■□□□□ 0.146e-7■■■■■ 53.7
TRAPPC9-202ENST00000438773 GRIN2BQ13224 1484 aa15.93■□□□□ 0.14
TRAPPC9-202ENST00000438773 LAMC3Q9Y6N6 1575 aa15.93■□□□□ 0.14
TRAPPC9-202ENST00000438773 RGL3Q3MIN7 710 aa15.93■□□□□ 0.14
TRAPPC9-202ENST00000438773 TSHZ2Q9NRE2 1034 aa15.91■□□□□ 0.14
TRAPPC9-202ENST00000438773 ABCA10Q8WWZ4 1543 aa15.89■□□□□ 0.13
TRAPPC9-202ENST00000438773 CCDC18Q5T9S5 1454 aa15.89■□□□□ 0.13
TRAPPC9-202ENST00000438773 FOXD1Q16676 465 aa15.87■□□□□ 0.13
TRAPPC9-202ENST00000438773 TIMELESSQ9UNS1 1208 aa15.87■□□□□ 0.13
TRAPPC9-202ENST00000438773 FKBP8Q14318 412 aa15.86■□□□□ 0.13
TRAPPC9-202ENST00000438773 PHLDB1Q86UU1 1377 aa15.86■□□□□ 0.13
TRAPPC9-202ENST00000438773 PTPRGP23470 1445 aa15.85■□□□□ 0.13
TRAPPC9-202ENST00000438773 IFT140Q96RY7 1462 aa15.85■□□□□ 0.13
TRAPPC9-202ENST00000438773 CYB5RLQ6IPT4 315 aa15.85■□□□□ 0.13
TRAPPC9-202ENST00000438773 STAG3Q9UJ98 1225 aa15.85■□□□□ 0.13
TRAPPC9-202ENST00000438773 LRRC9Q6ZRR7 1453 aa15.84■□□□□ 0.13
TRAPPC9-202ENST00000438773 CASKIN1Q8WXD9 1431 aa15.84■□□□□ 0.13
TRAPPC9-202ENST00000438773 BIVM-ERCC5R4GMW8 1640 aa15.84■□□□□ 0.13
TRAPPC9-202ENST00000438773 URB2Q14146 1524 aaKnown RBP15.83■□□□□ 0.12
TRAPPC9-202ENST00000438773 MPHOSPH9Q99550 1183 aa15.83■□□□□ 0.12
TRAPPC9-202ENST00000438773 ARID4BQ4LE39 1312 aaPredicted RBP15.83■□□□□ 0.12
TRAPPC9-202ENST00000438773 HNRNPMP52272 730 aaKnown RBP eCLIP15.82■□□□□ 0.121e-6■■■■■ 32.1
TRAPPC9-202ENST00000438773 FAM9BQ8IZU0 186 aa15.81■□□□□ 0.12
TRAPPC9-202ENST00000438773 HNRNPUQ00839 825 aaKnown RBP eCLIP15.81■□□□□ 0.12
TRAPPC9-202ENST00000438773 PKD2Q13563 968 aa15.81■□□□□ 0.12
TRAPPC9-202ENST00000438773 EFCAB2Q5VUJ9 269 aa15.8■□□□□ 0.12
TRAPPC9-202ENST00000438773 ANKRD30AQ9BXX3 1397 aa15.78■□□□□ 0.12
TRAPPC9-202ENST00000438773 FGD6Q6ZV73 1430 aa15.77■□□□□ 0.12
TRAPPC9-202ENST00000438773 CARD11Q9BXL7 1154 aa15.77■□□□□ 0.11
TRAPPC9-202ENST00000438773 SNAPC4Q5SXM2 1469 aa15.76■□□□□ 0.11
TRAPPC9-202ENST00000438773 FYCO1Q9BQS8 1478 aa15.76■□□□□ 0.11
TRAPPC9-202ENST00000438773 EFCAB5A4FU69 1503 aa15.75■□□□□ 0.11
TRAPPC9-202ENST00000438773 MRS2Q9HD23 443 aa15.75■□□□□ 0.11
TRAPPC9-202ENST00000438773 PPP1R15AO75807 674 aaPredicted RBP15.75■□□□□ 0.11
TRAPPC9-202ENST00000438773 NUP155O75694 1391 aa15.75■□□□□ 0.11
TRAPPC9-202ENST00000438773 ZNF644Q9H582 1327 aaPredicted RBP15.74■□□□□ 0.11
TRAPPC9-202ENST00000438773 MYOM3Q5VTT5 1437 aa15.74■□□□□ 0.11
TRAPPC9-202ENST00000438773 IRX6P78412 446 aaPredicted RBP15.74■□□□□ 0.11
TRAPPC9-202ENST00000438773 ANP32EQ9BTT0 268 aa15.74■□□□□ 0.11
TRAPPC9-202ENST00000438773 DCAF11Q8TEB1 546 aa15.74■□□□□ 0.11
TRAPPC9-202ENST00000438773 TMC1Q8TDI8 760 aa15.73■□□□□ 0.11
TRAPPC9-202ENST00000438773 SENP3Q9H4L4 574 aaPredicted RBP15.73■□□□□ 0.11
TRAPPC9-202ENST00000438773 RRBP1Q9P2E9 1410 aaKnown RBP15.72■□□□□ 0.11
TRAPPC9-202ENST00000438773 NCOA2Q15596 1464 aa15.71■□□□□ 0.11
TRAPPC9-202ENST00000438773 RTL5Q5HYW3 569 aaPredicted RBP15.71■□□□□ 0.11
TRAPPC9-202ENST00000438773 RSPH4AQ5TD94 716 aa15.7■□□□□ 0.1
TRAPPC9-202ENST00000438773 DAXXQ9UER7 740 aaPredicted RBP15.7■□□□□ 0.1
TRAPPC9-202ENST00000438773 L3MBTL2Q969R5 705 aa15.68■□□□□ 0.1
TRAPPC9-202ENST00000438773 PRDM2Q13029 1718 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms