RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 DNMBPQ6XZF7 1577 aa12.34□□□□□ -0.43
CD44-208ENST00000428726 CHIC2Q9UKJ5 165 aa12.34□□□□□ -0.43
CD44-208ENST00000428726 ACIN1Q9UKV3 1341 aaKnown RBP12.33□□□□□ -0.44
CD44-208ENST00000428726 ARHGAP35Q9NRY4 1499 aa12.33□□□□□ -0.44
CD44-208ENST00000428726 FHOD3Q2V2M9 1422 aa12.33□□□□□ -0.44
CD44-208ENST00000428726 CNGB1Q14028 1251 aaPredicted RBP12.3□□□□□ -0.44
CD44-208ENST00000428726 TOPBP1Q92547 1522 aa12.3□□□□□ -0.44
CD44-208ENST00000428726 LAMC3Q9Y6N6 1575 aa12.3□□□□□ -0.44
CD44-208ENST00000428726 ABCA10Q8WWZ4 1543 aa12.28□□□□□ -0.44
CD44-208ENST00000428726 POLA1P09884 1462 aaPredicted RBP12.27□□□□□ -0.44
CD44-208ENST00000428726 KCNH8Q96L42 1107 aa12.24□□□□□ -0.45
CD44-208ENST00000428726 RRBP1Q9P2E9 1410 aaKnown RBP12.23□□□□□ -0.45
CD44-208ENST00000428726 MAP3K1Q13233 1512 aa12.23□□□□□ -0.45
CD44-208ENST00000428726 RRP7BPQ9NSQ0 103 aa12.23□□□□□ -0.45
CD44-208ENST00000428726 CUL7Q14999 1698 aa12.22□□□□□ -0.45
CD44-208ENST00000428726 PHLDB1Q86UU1 1377 aa12.22□□□□□ -0.45
CD44-208ENST00000428726 AQRO60306 1485 aaKnown RBP eCLIP12.21□□□□□ -0.45
CD44-208ENST00000428726 PDS5BQ9NTI5 1447 aa12.21□□□□□ -0.45
CD44-208ENST00000428726 CCNB3Q8WWL7 1395 aa12.21□□□□□ -0.45
CD44-208ENST00000428726 URB2Q14146 1524 aaKnown RBP12.2□□□□□ -0.46
CD44-208ENST00000428726 CENPBP07199 599 aaPredicted RBP12.2□□□□□ -0.46
CD44-208ENST00000428726 FHAD1B1AJZ9 1412 aa12.2□□□□□ -0.46
CD44-208ENST00000428726 DHX57Q6P158 1386 aaKnown RBP12.2□□□□□ -0.46
CD44-208ENST00000428726 FOXD1Q16676 465 aa12.2□□□□□ -0.46
CD44-208ENST00000428726 TIAM1Q13009 1591 aa12.19□□□□□ -0.46
CD44-208ENST00000428726 WDR97A6NE52 1622 aa12.18□□□□□ -0.46
CD44-208ENST00000428726 CLSPNQ9HAW4 1339 aa12.18□□□□□ -0.46
CD44-208ENST00000428726 RAB3GAP2Q9H2M9 1393 aa12.17□□□□□ -0.46
CD44-208ENST00000428726 EFCAB5A4FU69 1503 aa12.16□□□□□ -0.46
CD44-208ENST00000428726 TRIM52Q96A61 297 aa12.16□□□□□ -0.46
CD44-208ENST00000428726 DDX10Q13206 875 aaKnown RBP12.16□□□□□ -0.46
CD44-208ENST00000428726 ZNF777Q9ULD5 760 aaPredicted RBP12.16□□□□□ -0.46
CD44-208ENST00000428726 PELP1Q8IZL8 1130 aaKnown RBP12.16□□□□□ -0.46
CD44-208ENST00000428726 CTTNBP2Q8WZ74 1663 aa12.15□□□□□ -0.46
CD44-208ENST00000428726 SENP3-EIF4A1A0A087X0R7 540 aa12.15□□□□□ -0.46
CD44-208ENST00000428726 ABCA5Q8WWZ7 1642 aa12.14□□□□□ -0.47
CD44-208ENST00000428726 LRRC9Q6ZRR7 1453 aa12.14□□□□□ -0.47
CD44-208ENST00000428726 MTUS2Q5JR59 1369 aa12.14□□□□□ -0.47
CD44-208ENST00000428726 CFAP43Q8NDM7 1665 aa12.12□□□□□ -0.47
CD44-208ENST00000428726 PCF11O94913 1555 aaKnown RBP12.12□□□□□ -0.47
CD44-208ENST00000428726 KIF21AQ7Z4S6 1674 aa12.12□□□□□ -0.47
CD44-208ENST00000428726 GAPVD1Q14C86 1478 aa12.12□□□□□ -0.47
CD44-208ENST00000428726 FYCO1Q9BQS8 1478 aa12.11□□□□□ -0.47
CD44-208ENST00000428726 CASKIN1Q8WXD9 1431 aa12.09□□□□□ -0.47
CD44-208ENST00000428726 ZNF644Q9H582 1327 aaPredicted RBP12.09□□□□□ -0.47
CD44-208ENST00000428726 FMN1Q68DA7 1419 aa12.08□□□□□ -0.48
CD44-208ENST00000428726 CHMP7Q8WUX9 453 aaPredicted RBP12.07□□□□□ -0.48
CD44-208ENST00000428726 POLR3GLQ9BT43 218 aa12.07□□□□□ -0.48
CD44-208ENST00000428726 TARBP1Q13395 1621 aaKnown RBP12.06□□□□□ -0.48
CD44-208ENST00000428726 ZNF608Q9ULD9 1512 aaPredicted RBP12.06□□□□□ -0.48
CD44-208ENST00000428726 ZNF326Q5BKZ1 582 aaKnown RBP12.05□□□□□ -0.48
CD44-208ENST00000428726 BCANQ96GW7 911 aa12.05□□□□□ -0.48
CD44-208ENST00000428726 SAMD9Q5K651 1589 aa12.04□□□□□ -0.48
CD44-208ENST00000428726 SNAPC4Q5SXM2 1469 aa12.02□□□□□ -0.49
CD44-208ENST00000428726 MRC2Q9UBG0 1479 aa12.02□□□□□ -0.49
CD44-208ENST00000428726 SETD5Q9C0A6 1442 aa12.01□□□□□ -0.49
CD44-208ENST00000428726 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.01□□□□□ -0.49
CD44-208ENST00000428726 ERCC6Q03468 1493 aa12□□□□□ -0.49
CD44-208ENST00000428726 PBRM1Q86U86 1689 aa12□□□□□ -0.49
CD44-208ENST00000428726 PTPRKQ15262 1439 aa11.99□□□□□ -0.49
CD44-208ENST00000428726 THOC2Q8NI27 1593 aaKnown RBP11.98□□□□□ -0.49
CD44-208ENST00000428726 GRIN2BQ13224 1484 aa11.96□□□□□ -0.49
CD44-208ENST00000428726 ADAMTS12P58397 1594 aa11.95□□□□□ -0.5
CD44-208ENST00000428726 CDK13Q14004 1512 aaKnown RBP11.95□□□□□ -0.5
CD44-208ENST00000428726 FGD6Q6ZV73 1430 aa11.94□□□□□ -0.5
CD44-208ENST00000428726 IFT140Q96RY7 1462 aa11.94□□□□□ -0.5
CD44-208ENST00000428726 MAPKBP1O60336 1514 aa11.94□□□□□ -0.5
CD44-208ENST00000428726 IQGAP2Q13576 1575 aa11.94□□□□□ -0.5
CD44-208ENST00000428726 LRRIQ1Q96JM4 1722 aa11.93□□□□□ -0.5
CD44-208ENST00000428726 WDR62O43379 1518 aa11.92□□□□□ -0.5
CD44-208ENST00000428726 EHBP1L1Q8N3D4 1523 aa11.92□□□□□ -0.5
CD44-208ENST00000428726 TONSLQ96HA7 1378 aa11.92□□□□□ -0.5
CD44-208ENST00000428726 CCDC18Q5T9S5 1454 aa11.91□□□□□ -0.5
CD44-208ENST00000428726 SUPT6HQ7KZ85 1726 aaKnown RBP11.91□□□□□ -0.5
CD44-208ENST00000428726 SENP3Q9H4L4 574 aaPredicted RBP11.91□□□□□ -0.5
CD44-208ENST00000428726 NCOA2Q15596 1464 aa11.9□□□□□ -0.5
CD44-208ENST00000428726 HECW1Q76N89 1606 aa11.89□□□□□ -0.51
CD44-208ENST00000428726 MYOM3Q5VTT5 1437 aa11.89□□□□□ -0.51
CD44-208ENST00000428726 PPP1R15AO75807 674 aaPredicted RBP11.89□□□□□ -0.51
CD44-208ENST00000428726 JPH4Q96JJ6 628 aa11.89□□□□□ -0.51
CD44-208ENST00000428726 KDM2AQ9Y2K7 1162 aa11.89□□□□□ -0.51
CD44-208ENST00000428726 IRX6P78412 446 aaPredicted RBP11.88□□□□□ -0.51
CD44-208ENST00000428726 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.87□□□□□ -0.51
CD44-208ENST00000428726 UGGT2Q9NYU1 1516 aa11.87□□□□□ -0.51
CD44-208ENST00000428726 SLC4A1APQ9BWU0 796 aaKnown RBP11.87□□□□□ -0.51
CD44-208ENST00000428726 CFDP1Q9UEE9 299 aaPredicted RBP11.87□□□□□ -0.51
CD44-208ENST00000428726 TIMELESSQ9UNS1 1208 aa11.87□□□□□ -0.51
CD44-208ENST00000428726 ARHGEF11O15085 1522 aa11.86□□□□□ -0.51
CD44-208ENST00000428726 MAGI3Q5TCQ9 1506 aa11.85□□□□□ -0.51
CD44-208ENST00000428726 HFM1A2PYH4 1435 aa11.85□□□□□ -0.51
CD44-208ENST00000428726 HNRNPMP52272 730 aaKnown RBP eCLIP11.85□□□□□ -0.51
CD44-208ENST00000428726 PRG4Q92954 1404 aaPredicted RBP11.85□□□□□ -0.51
CD44-208ENST00000428726 EPRSP07814 1512 aaKnown RBP11.84□□□□□ -0.51
CD44-208ENST00000428726 KIAA0586Q9BVV6 1533 aa11.84□□□□□ -0.51
CD44-208ENST00000428726 MPHOSPH9Q99550 1183 aa11.84□□□□□ -0.51
CD44-208ENST00000428726 L3MBTL2Q969R5 705 aa11.84□□□□□ -0.51
CD44-208ENST00000428726 PTPN23Q9H3S7 1636 aa11.83□□□□□ -0.52
CD44-208ENST00000428726 PLB1Q6P1J6 1458 aa11.83□□□□□ -0.52
CD44-208ENST00000428726 EIF4G3O43432 1585 aaKnown RBP11.83□□□□□ -0.52
CD44-208ENST00000428726 GRIN2AQ12879 1464 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms