RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 NISCHQ9Y2I1 1504 aa17.44■□□□□ 0.38
CD44-208ENST00000428726 SHROOM4Q9ULL8 1493 aa15.42■□□□□ 0.06
CD44-208ENST00000428726 DCAF8L2P0C7V8 631 aa15.38■□□□□ 0.05
CD44-208ENST00000428726 SUPT5HO00267 1087 aaKnown RBP15.06■□□□□ 0
CD44-208ENST00000428726 CCDC180Q9P1Z9 1646 aa14.97□□□□□ -0.01
CD44-208ENST00000428726 ZCCHC6Q5VYS8 1495 aaKnown RBP14.73□□□□□ -0.05
CD44-208ENST00000428726 DCAF1Q9Y4B6 1507 aa14.39□□□□□ -0.11
CD44-208ENST00000428726 EHMT2Q96KQ7 1210 aa14.33□□□□□ -0.11
CD44-208ENST00000428726 ABCC9O60706 1549 aa14.2□□□□□ -0.14
CD44-208ENST00000428726 CHIC1Q5VXU3 224 aa14.15□□□□□ -0.15
CD44-208ENST00000428726 LOC105371045A0A1W2PR82 267 aa14.11□□□□□ -0.15
CD44-208ENST00000428726 FAM9AQ8IZU1 332 aaPredicted RBP14.08□□□□□ -0.16
CD44-208ENST00000428726 MYO15BQ96JP2 1530 aa14.06□□□□□ -0.16
CD44-208ENST00000428726 SCRIBQ14160 1630 aa13.96□□□□□ -0.17
CD44-208ENST00000428726 PCGF6Q9BYE7 350 aa13.9□□□□□ -0.18
CD44-208ENST00000428726 NACADO15069 1562 aa13.87□□□□□ -0.19
CD44-208ENST00000428726 PABPN1Q86U42 306 aaKnown RBP eCLIP13.85□□□□□ -0.19
CD44-208ENST00000428726 PPARGC1BQ86YN6 1023 aaKnown RBP13.81□□□□□ -0.2
CD44-208ENST00000428726 TRIM41Q8WV44 630 aa13.75□□□□□ -0.21
CD44-208ENST00000428726 TTBK1Q5TCY1 1321 aaPredicted RBP13.73□□□□□ -0.21
CD44-208ENST00000428726 RSF1Q96T23 1441 aaPredicted RBP13.71□□□□□ -0.21
CD44-208ENST00000428726 CECR2Q9BXF3 1484 aa13.71□□□□□ -0.22
CD44-208ENST00000428726 RB1CC1Q8TDY2 1594 aa13.66□□□□□ -0.22
CD44-208ENST00000428726 RANGAP1P46060 587 aaPredicted RBP13.53□□□□□ -0.24
CD44-208ENST00000428726 MROH2BQ7Z745 1585 aa13.5□□□□□ -0.25
CD44-208ENST00000428726 BAZ1AQ9NRL2 1556 aaPredicted RBP13.43□□□□□ -0.26
CD44-208ENST00000428726 WIZO95785 1651 aa13.42□□□□□ -0.26
CD44-208ENST00000428726 HRCP23327 699 aa13.41□□□□□ -0.26
CD44-208ENST00000428726 UNC13AQ9UPW8 1703 aa13.4□□□□□ -0.26
CD44-208ENST00000428726 AEBP2Q6ZN18 517 aaPredicted RBP13.36□□□□□ -0.27
CD44-208ENST00000428726 SMARCA4P51532 1647 aa13.31□□□□□ -0.28
CD44-208ENST00000428726 TOP2AP11388 1531 aaKnown RBP13.27□□□□□ -0.28
CD44-208ENST00000428726 UBTFP17480 764 aaKnown RBP13.25□□□□□ -0.29
CD44-208ENST00000428726 TRIM26Q12899 539 aaPredicted RBP13.24□□□□□ -0.29
CD44-208ENST00000428726 ABCC8Q09428 1581 aa13.24□□□□□ -0.29
CD44-208ENST00000428726 BICRAQ9NZM4 1560 aa13.24□□□□□ -0.29
CD44-208ENST00000428726 EIF4G1Q04637 1599 aaKnown RBP13.21□□□□□ -0.3
CD44-208ENST00000428726 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.18□□□□□ -0.3
CD44-208ENST00000428726 CCDC88BA6NC98 1476 aa13.17□□□□□ -0.3
CD44-208ENST00000428726 SMARCA2P51531 1590 aa13.17□□□□□ -0.3
CD44-208ENST00000428726 SOGA1O94964 1423 aa13.13□□□□□ -0.31
CD44-208ENST00000428726 RUSC2Q8N2Y8 1516 aa13.12□□□□□ -0.31
CD44-208ENST00000428726 PEG3Q9GZU2 1588 aa13.12□□□□□ -0.31
CD44-208ENST00000428726 CSRNP3Q8WYN3 585 aa13.01□□□□□ -0.33
CD44-208ENST00000428726 CCER1Q8TC90 406 aaPredicted RBP13□□□□□ -0.33
CD44-208ENST00000428726 ATAD2BQ9ULI0 1458 aa13□□□□□ -0.33
CD44-208ENST00000428726 HNRNPUL2Q1KMD3 747 aaKnown RBP12.99□□□□□ -0.33
CD44-208ENST00000428726 BAZ1BQ9UIG0 1483 aaKnown RBP12.96□□□□□ -0.33
CD44-208ENST00000428726 EEA1Q15075 1411 aa12.93□□□□□ -0.34
CD44-208ENST00000428726 WRNQ14191 1432 aaPredicted RBP eCLIP12.9□□□□□ -0.34
CD44-208ENST00000428726 DNAJC5BQ9UF47 199 aa12.88□□□□□ -0.35
CD44-208ENST00000428726 ITGAEP38570 1179 aa12.88□□□□□ -0.35
CD44-208ENST00000428726 ATP1B4Q9UN42 357 aaPredicted RBP12.88□□□□□ -0.35
CD44-208ENST00000428726 CEP162Q5TB80 1403 aa12.85□□□□□ -0.35
CD44-208ENST00000428726 P3H3Q8IVL6 736 aa12.85□□□□□ -0.35
CD44-208ENST00000428726 TNIKQ9UKE5 1360 aa12.83□□□□□ -0.36
CD44-208ENST00000428726 SYNJ1O43426 1573 aa12.82□□□□□ -0.36
CD44-208ENST00000428726 NCAPD3P42695 1498 aa12.81□□□□□ -0.36
CD44-208ENST00000428726 HMGXB3Q12766 1538 aa12.81□□□□□ -0.36
CD44-208ENST00000428726 ZEB1P37275 1124 aaPredicted RBP12.8□□□□□ -0.36
CD44-208ENST00000428726 APLP2Q06481 763 aa12.79□□□□□ -0.36
CD44-208ENST00000428726 GOLGA3Q08378 1498 aa12.78□□□□□ -0.36
CD44-208ENST00000428726 CEP164Q9UPV0 1460 aa12.73□□□□□ -0.37
CD44-208ENST00000428726 KIF21BO75037 1637 aa12.73□□□□□ -0.37
CD44-208ENST00000428726 TOP2BQ02880 1626 aa12.72□□□□□ -0.37
CD44-208ENST00000428726 RAPGEF2Q9Y4G8 1499 aa12.71□□□□□ -0.37
CD44-208ENST00000428726 BIVM-ERCC5R4GMW8 1640 aa12.69□□□□□ -0.38
CD44-208ENST00000428726 ARID3CA6NKF2 412 aa12.69□□□□□ -0.38
CD44-208ENST00000428726 KANK4Q5T7N3 995 aaPredicted RBP12.67□□□□□ -0.38
CD44-208ENST00000428726 YTHDC1Q96MU7 727 aaKnown RBP12.67□□□□□ -0.38
CD44-208ENST00000428726 SCAF1Q9H7N4 1312 aaKnown RBP12.66□□□□□ -0.38
CD44-208ENST00000428726 CLIP1P30622 1438 aa12.66□□□□□ -0.38
CD44-208ENST00000428726 CFTRP13569 1480 aa12.65□□□□□ -0.39
CD44-208ENST00000428726 CUX1P39880 1505 aa12.59□□□□□ -0.39
CD44-208ENST00000428726 PRDM2Q13029 1718 aa12.58□□□□□ -0.4
CD44-208ENST00000428726 NESP48681 1621 aa12.56□□□□□ -0.4
CD44-208ENST00000428726 ERICH3Q5RHP9 1530 aa12.56□□□□□ -0.4
CD44-208ENST00000428726 PRXQ9BXM0 1461 aa12.54□□□□□ -0.4
CD44-208ENST00000428726 DIEXFQ68CQ4 756 aaKnown RBP12.54□□□□□ -0.4
CD44-208ENST00000428726 VPS8Q8N3P4 1428 aa12.54□□□□□ -0.4
CD44-208ENST00000428726 KIF27Q86VH2 1401 aa12.54□□□□□ -0.4
CD44-208ENST00000428726 CADPSQ9ULU8 1353 aa12.53□□□□□ -0.4
CD44-208ENST00000428726 CC2D2AQ9P2K1 1620 aa12.52□□□□□ -0.41
CD44-208ENST00000428726 FAM50AQ14320 339 aaKnown RBP12.51□□□□□ -0.41
CD44-208ENST00000428726 CUX2O14529 1486 aa12.5□□□□□ -0.41
CD44-208ENST00000428726 RAD54L2Q9Y4B4 1467 aa12.48□□□□□ -0.41
CD44-208ENST00000428726 NEUROD1Q13562 356 aa12.48□□□□□ -0.41
CD44-208ENST00000428726 TDRD9Q8NDG6 1382 aaKnown RBP12.46□□□□□ -0.41
CD44-208ENST00000428726 HIRIP3Q9BW71 556 aaPredicted RBP12.46□□□□□ -0.41
CD44-208ENST00000428726 ARAP1Q96P48 1450 aa12.42□□□□□ -0.42
CD44-208ENST00000428726 IGF1RP08069 1367 aa12.41□□□□□ -0.42
CD44-208ENST00000428726 GTF3C3Q9Y5Q9 886 aa12.4□□□□□ -0.42
CD44-208ENST00000428726 FGD5Q6ZNL6 1462 aa12.4□□□□□ -0.42
CD44-208ENST00000428726 FBLN2P98095 1184 aa12.4□□□□□ -0.43
CD44-208ENST00000428726 CARMIL1Q5VZK9 1371 aa12.39□□□□□ -0.43
CD44-208ENST00000428726 MIER1Q8N108 512 aa12.39□□□□□ -0.43
CD44-208ENST00000428726 FANCD2Q9BXW9 1451 aa12.39□□□□□ -0.43
CD44-208ENST00000428726 ZNF316A6NFI3 1004 aaPredicted RBP12.36□□□□□ -0.43
CD44-208ENST00000428726 SIN3AQ96ST3 1273 aa12.36□□□□□ -0.43
CD44-208ENST00000428726 PHF23Q9BUL5 403 aaPredicted RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms