RNA–Protein interactions for RNA: ENST00000428014.1

SMC1A-203, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-203ENST00000428014 IGF1RP08069 1367 aa15.69■□□□□ 0.1
SMC1A-203ENST00000428014 SHROOM2Q13796 1616 aa15.63■□□□□ 0.09
SMC1A-203ENST00000428014 CEP170Q5SW79 1584 aa15.62■□□□□ 0.09
SMC1A-203ENST00000428014 ARAP1Q96P48 1450 aa15.59■□□□□ 0.09
SMC1A-203ENST00000428014 KIAA0586Q9BVV6 1533 aa15.58■□□□□ 0.09
SMC1A-203ENST00000428014 CARMIL1Q5VZK9 1371 aa15.58■□□□□ 0.08
SMC1A-203ENST00000428014 RUSC2Q8N2Y8 1516 aa15.54■□□□□ 0.08
SMC1A-203ENST00000428014 TRIM41Q8WV44 630 aa15.54■□□□□ 0.08
SMC1A-203ENST00000428014 EEA1Q15075 1411 aa15.53■□□□□ 0.08
SMC1A-203ENST00000428014 JPH4Q96JJ6 628 aa15.51■□□□□ 0.07
SMC1A-203ENST00000428014 RAPGEF2Q9Y4G8 1499 aa15.51■□□□□ 0.07
SMC1A-203ENST00000428014 MSH5O43196 834 aa15.49■□□□□ 0.07
SMC1A-203ENST00000428014 CYB5RLQ6IPT4 315 aa15.49■□□□□ 0.07
SMC1A-203ENST00000428014 PRXQ9BXM0 1461 aa15.47■□□□□ 0.07
SMC1A-203ENST00000428014 PRG4Q92954 1404 aaPredicted RBP15.45■□□□□ 0.06
SMC1A-203ENST00000428014 IQGAP2Q13576 1575 aa15.42■□□□□ 0.06
SMC1A-203ENST00000428014 CARMIL2Q6F5E8 1435 aa15.4■□□□□ 0.06
SMC1A-203ENST00000428014 UGGT2Q9NYU1 1516 aa15.39■□□□□ 0.05
SMC1A-203ENST00000428014 ERCC6L2Q5T890 1561 aa15.39■□□□□ 0.05
SMC1A-203ENST00000428014 CSRNP3Q8WYN3 585 aa15.36■□□□□ 0.05
SMC1A-203ENST00000428014 TNIKQ9UKE5 1360 aa15.34■□□□□ 0.05
SMC1A-203ENST00000428014 GOLGA3Q08378 1498 aa15.32■□□□□ 0.04
SMC1A-203ENST00000428014 CTTNBP2Q8WZ74 1663 aa15.32■□□□□ 0.04
SMC1A-203ENST00000428014 DISP1Q96F81 1524 aa15.31■□□□□ 0.04
SMC1A-203ENST00000428014 UHRF1BP1LA0JNW5 1464 aa15.3■□□□□ 0.04
SMC1A-203ENST00000428014 PTPRGP23470 1445 aa15.29■□□□□ 0.04
SMC1A-203ENST00000428014 MAPKBP1O60336 1514 aa15.28■□□□□ 0.04
SMC1A-203ENST00000428014 KIF21BO75037 1637 aa15.27■□□□□ 0.03
SMC1A-203ENST00000428014 KIAA0556O60303 1618 aa15.26■□□□□ 0.03
SMC1A-203ENST00000428014 ADCY10Q96PN6 1610 aa15.23■□□□□ 0.03
SMC1A-203ENST00000428014 NPM1P06748 294 aaKnown RBP eCLIP15.22■□□□□ 0.03
SMC1A-203ENST00000428014 UACAQ9BZF9 1416 aa15.22■□□□□ 0.03
SMC1A-203ENST00000428014 ABCC2Q92887 1545 aa15.22■□□□□ 0.03
SMC1A-203ENST00000428014 KDM5BQ9UGL1 1544 aa15.19■□□□□ 0.02
SMC1A-203ENST00000428014 FAM9AQ8IZU1 332 aaPredicted RBP15.18■□□□□ 0.02
SMC1A-203ENST00000428014 ABCC10Q5T3U5 1492 aa15.18■□□□□ 0.02
SMC1A-203ENST00000428014 SAMD9Q5K651 1589 aa15.17■□□□□ 0.02
SMC1A-203ENST00000428014 PLB1Q6P1J6 1458 aa15.15■□□□□ 0.02
SMC1A-203ENST00000428014 TRHP20396 242 aaPredicted RBP15.15■□□□□ 0.02
SMC1A-203ENST00000428014 EFCAB5A4FU69 1503 aa15.14■□□□□ 0.01
SMC1A-203ENST00000428014 PPP4R3CPQ6ZMV5 832 aa15.14■□□□□ 0.01
SMC1A-203ENST00000428014 ABCA8O94911 1581 aa15.12■□□□□ 0.01
SMC1A-203ENST00000428014 GLI2P10070 1586 aa15.11■□□□□ 0.01
SMC1A-203ENST00000428014 DIP2BQ9P265 1576 aa15.1■□□□□ 0.01
SMC1A-203ENST00000428014 KIF13AQ9H1H9 1805 aa15.1■□□□□ 0.01
SMC1A-203ENST00000428014 ASXL2Q76L83 1435 aa15.07■□□□□ 0
SMC1A-203ENST00000428014 ZCCHC11Q5TAX3 1644 aaKnown RBP15.03■□□□□ -0
SMC1A-203ENST00000428014 WDR7Q9Y4E6 1490 aa15.01□□□□□ -0.01
SMC1A-203ENST00000428014 FAM69CQ0P6D2 419 aa15.01□□□□□ -0.01
SMC1A-203ENST00000428014 EPRSP07814 1512 aaKnown RBP15.01□□□□□ -0.01
SMC1A-203ENST00000428014 FMN1Q68DA7 1419 aa15□□□□□ -0.01
SMC1A-203ENST00000428014 RAPGEF6Q8TEU7 1601 aa14.99□□□□□ -0.01
SMC1A-203ENST00000428014 ATP10BO94823 1461 aa14.96□□□□□ -0.01
SMC1A-203ENST00000428014 UBTFP17480 764 aaKnown RBP14.96□□□□□ -0.01
SMC1A-203ENST00000428014 MAP3K4Q9Y6R4 1608 aa14.95□□□□□ -0.02
SMC1A-203ENST00000428014 TEX14Q8IWB6 1497 aa14.95□□□□□ -0.02
SMC1A-203ENST00000428014 NUP153P49790 1475 aaKnown RBP14.95□□□□□ -0.02
SMC1A-203ENST00000428014 ARHGAP35Q9NRY4 1499 aa14.95□□□□□ -0.02
SMC1A-203ENST00000428014 MAGI3Q5TCQ9 1506 aa14.94□□□□□ -0.02
SMC1A-203ENST00000428014 KCNA4P22459 653 aa14.94□□□□□ -0.02
SMC1A-203ENST00000428014 FHOD3Q2V2M9 1422 aa14.93□□□□□ -0.02
SMC1A-203ENST00000428014 PHLDB1Q86UU1 1377 aa14.93□□□□□ -0.02
SMC1A-203ENST00000428014 CFAP43Q8NDM7 1665 aa14.93□□□□□ -0.02
SMC1A-203ENST00000428014 TTBK1Q5TCY1 1321 aaPredicted RBP14.91□□□□□ -0.02
SMC1A-203ENST00000428014 SCAF1Q9H7N4 1312 aaKnown RBP14.9□□□□□ -0.02
SMC1A-203ENST00000428014 PPRC1Q5VV67 1664 aaKnown RBP14.89□□□□□ -0.03
SMC1A-203ENST00000428014 P3H3Q8IVL6 736 aa14.88□□□□□ -0.03
SMC1A-203ENST00000428014 ABCA9Q8IUA7 1624 aa14.88□□□□□ -0.03
SMC1A-203ENST00000428014 HECW1Q76N89 1606 aa14.87□□□□□ -0.03
SMC1A-203ENST00000428014 CD109Q6YHK3 1445 aa14.85□□□□□ -0.03
SMC1A-203ENST00000428014 PLEKHD1A6NEE1 506 aa14.84□□□□□ -0.03
SMC1A-203ENST00000428014 KDM6BO15054 1643 aa14.84□□□□□ -0.03
SMC1A-203ENST00000428014 CASKIN1Q8WXD9 1431 aa14.83□□□□□ -0.03
SMC1A-203ENST00000428014 CDK11AQ9UQ88 783 aaPredicted RBP14.83□□□□□ -0.04
SMC1A-203ENST00000428014 CLIP1P30622 1438 aa14.82□□□□□ -0.04
SMC1A-203ENST00000428014 CCDC18Q5T9S5 1454 aa14.82□□□□□ -0.04
SMC1A-203ENST00000428014 NEO1Q92859 1461 aa14.82□□□□□ -0.04
SMC1A-203ENST00000428014 ARAP3Q8WWN8 1544 aa14.82□□□□□ -0.04
SMC1A-203ENST00000428014 MAPK8IP2Q13387 824 aaPredicted RBP14.81□□□□□ -0.04
SMC1A-203ENST00000428014 FYCO1Q9BQS8 1478 aa14.8□□□□□ -0.04
SMC1A-203ENST00000428014 TSPOAP1O95153 1857 aa14.8□□□□□ -0.04
SMC1A-203ENST00000428014 TROQ12816 1431 aaPredicted RBP14.75□□□□□ -0.05
SMC1A-203ENST00000428014 NCBP3Q53F19 620 aaKnown RBP14.75□□□□□ -0.05
SMC1A-203ENST00000428014 KCNH8Q96L42 1107 aa14.75□□□□□ -0.05
SMC1A-203ENST00000428014 CFAP74Q9C0B2 1584 aa14.74□□□□□ -0.05
SMC1A-203ENST00000428014 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.73□□□□□ -0.053e-6■■□□□ 14.4
SMC1A-203ENST00000428014 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.73□□□□□ -0.05
SMC1A-203ENST00000428014 RANGAP1P46060 587 aaPredicted RBP14.73□□□□□ -0.05
SMC1A-203ENST00000428014 HNRNPUL2Q1KMD3 747 aaKnown RBP14.73□□□□□ -0.05
SMC1A-203ENST00000428014 COL17A1Q9UMD9 1497 aaPredicted RBP14.73□□□□□ -0.05
SMC1A-203ENST00000428014 CDK13Q14004 1512 aaKnown RBP14.72□□□□□ -0.05
SMC1A-203ENST00000428014 CEP162Q5TB80 1403 aa14.72□□□□□ -0.05
SMC1A-203ENST00000428014 PLCH2O75038 1416 aa14.71□□□□□ -0.05
SMC1A-203ENST00000428014 PCF11O94913 1555 aaKnown RBP14.71□□□□□ -0.05
SMC1A-203ENST00000428014 KIF14Q15058 1648 aa14.69□□□□□ -0.06
SMC1A-203ENST00000428014 CNKSR2Q8WXI2 1034 aa14.68□□□□□ -0.06
SMC1A-203ENST00000428014 FANCAO15360 1455 aa14.67□□□□□ -0.06
SMC1A-203ENST00000428014 TTC37Q6PGP7 1564 aa14.66□□□□□ -0.06
SMC1A-203ENST00000428014 LRRIQ1Q96JM4 1722 aa14.66□□□□□ -0.06
SMC1A-203ENST00000428014 MAGI2Q86UL8 1455 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms