RNA–Protein interactions for RNA: ENST00000428014.1

SMC1A-203, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-203ENST00000428014 NISCHQ9Y2I1 1504 aa22.45■■□□□ 1.18
SMC1A-203ENST00000428014 AEBP2Q6ZN18 517 aaPredicted RBP21.49■■□□□ 1.03
SMC1A-203ENST00000428014 CHIC1Q5VXU3 224 aa21.07■□□□□ 0.96
SMC1A-203ENST00000428014 CCDC180Q9P1Z9 1646 aa20.07■□□□□ 0.8
SMC1A-203ENST00000428014 ABCC9O60706 1549 aa19.43■□□□□ 0.7
SMC1A-203ENST00000428014 MYO15BQ96JP2 1530 aa18.92■□□□□ 0.62
SMC1A-203ENST00000428014 NACADO15069 1562 aa18.89■□□□□ 0.62
SMC1A-203ENST00000428014 RB1CC1Q8TDY2 1594 aa18.87■□□□□ 0.61
SMC1A-203ENST00000428014 DCAF1Q9Y4B6 1507 aa18.75■□□□□ 0.59
SMC1A-203ENST00000428014 ZCCHC6Q5VYS8 1495 aaKnown RBP18.71■□□□□ 0.59
SMC1A-203ENST00000428014 PHF23Q9BUL5 403 aaPredicted RBP18.57■□□□□ 0.56
SMC1A-203ENST00000428014 DCAF8L2P0C7V8 631 aa18.46■□□□□ 0.55
SMC1A-203ENST00000428014 SHROOM4Q9ULL8 1493 aa18.34■□□□□ 0.53
SMC1A-203ENST00000428014 UNC13AQ9UPW8 1703 aa18.31■□□□□ 0.52
SMC1A-203ENST00000428014 BICRAQ9NZM4 1560 aa18.24■□□□□ 0.51
SMC1A-203ENST00000428014 SENP3Q9H4L4 574 aaPredicted RBP18.18■□□□□ 0.5
SMC1A-203ENST00000428014 PABPN1Q86U42 306 aaKnown RBP eCLIP18.08■□□□□ 0.48
SMC1A-203ENST00000428014 SCRIBQ14160 1630 aa18.04■□□□□ 0.48
SMC1A-203ENST00000428014 DNAJC5BQ9UF47 199 aa17.87■□□□□ 0.45
SMC1A-203ENST00000428014 EIF4G1Q04637 1599 aaKnown RBP17.77■□□□□ 0.44
SMC1A-203ENST00000428014 CC2D2AQ9P2K1 1620 aa17.66■□□□□ 0.42
SMC1A-203ENST00000428014 CECR2Q9BXF3 1484 aa17.57■□□□□ 0.4
SMC1A-203ENST00000428014 BAZ1AQ9NRL2 1556 aaPredicted RBP17.44■□□□□ 0.38
SMC1A-203ENST00000428014 NCAPD3P42695 1498 aa17.44■□□□□ 0.38
SMC1A-203ENST00000428014 SMARCA4P51532 1647 aa17.39■□□□□ 0.38
SMC1A-203ENST00000428014 SMARCA2P51531 1590 aa17.38■□□□□ 0.37
SMC1A-203ENST00000428014 PEG3Q9GZU2 1588 aa17.38■□□□□ 0.37
SMC1A-203ENST00000428014 HMGXB3Q12766 1538 aa17.35■□□□□ 0.37
SMC1A-203ENST00000428014 ATAD2BQ9ULI0 1458 aa17.34■□□□□ 0.37
SMC1A-203ENST00000428014 MROH2BQ7Z745 1585 aa17.19■□□□□ 0.34
SMC1A-203ENST00000428014 BAZ1BQ9UIG0 1483 aaKnown RBP17.17■□□□□ 0.34
SMC1A-203ENST00000428014 PLPPR3Q6T4P5 718 aa17.15■□□□□ 0.34
SMC1A-203ENST00000428014 RSF1Q96T23 1441 aaPredicted RBP17.04■□□□□ 0.32
SMC1A-203ENST00000428014 LAMC3Q9Y6N6 1575 aa16.97■□□□□ 0.31
SMC1A-203ENST00000428014 WIZO95785 1651 aa16.95■□□□□ 0.3
SMC1A-203ENST00000428014 TOP2AP11388 1531 aaKnown RBP16.91■□□□□ 0.3
SMC1A-203ENST00000428014 FOXD1Q16676 465 aa16.89■□□□□ 0.29
SMC1A-203ENST00000428014 CADPSQ9ULU8 1353 aa16.87■□□□□ 0.29
SMC1A-203ENST00000428014 PDS5BQ9NTI5 1447 aa16.84■□□□□ 0.29
SMC1A-203ENST00000428014 CUX2O14529 1486 aa16.84■□□□□ 0.29
SMC1A-203ENST00000428014 ERCC6Q03468 1493 aa16.81■□□□□ 0.28
SMC1A-203ENST00000428014 NESP48681 1621 aa16.78■□□□□ 0.28
SMC1A-203ENST00000428014 CFTRP13569 1480 aa16.78■□□□□ 0.28
SMC1A-203ENST00000428014 THOC2Q8NI27 1593 aaKnown RBP16.68■□□□□ 0.26
SMC1A-203ENST00000428014 CCDC88BA6NC98 1476 aa16.64■□□□□ 0.25
SMC1A-203ENST00000428014 KIF21AQ7Z4S6 1674 aa16.62■□□□□ 0.25
SMC1A-203ENST00000428014 MRC2Q9UBG0 1479 aa16.61■□□□□ 0.25
SMC1A-203ENST00000428014 PRDM2Q13029 1718 aa16.61■□□□□ 0.25
SMC1A-203ENST00000428014 FANCD2Q9BXW9 1451 aa16.61■□□□□ 0.25
SMC1A-203ENST00000428014 CEP164Q9UPV0 1460 aa16.61■□□□□ 0.25
SMC1A-203ENST00000428014 WDR62O43379 1518 aa16.6■□□□□ 0.25
SMC1A-203ENST00000428014 ABCC8Q09428 1581 aa16.5■□□□□ 0.23
SMC1A-203ENST00000428014 URB2Q14146 1524 aaKnown RBP16.41■□□□□ 0.22
SMC1A-203ENST00000428014 ADRA2BP18089 450 aa16.35■□□□□ 0.21
SMC1A-203ENST00000428014 PPP6R1Q9UPN7 881 aa16.35■□□□□ 0.21
SMC1A-203ENST00000428014 DNMBPQ6XZF7 1577 aa16.34■□□□□ 0.21
SMC1A-203ENST00000428014 TOPBP1Q92547 1522 aa16.34■□□□□ 0.21
SMC1A-203ENST00000428014 IFT140Q96RY7 1462 aa16.32■□□□□ 0.2
SMC1A-203ENST00000428014 DNAJC5Q9H3Z4 198 aa16.32■□□□□ 0.2
SMC1A-203ENST00000428014 SUPT5HO00267 1087 aaKnown RBP16.29■□□□□ 0.2
SMC1A-203ENST00000428014 WDR97A6NE52 1622 aa16.25■□□□□ 0.19
SMC1A-203ENST00000428014 POLA1P09884 1462 aaPredicted RBP16.19■□□□□ 0.18
SMC1A-203ENST00000428014 TARBP1Q13395 1621 aaKnown RBP16.18■□□□□ 0.18
SMC1A-203ENST00000428014 CUX1P39880 1505 aa16.15■□□□□ 0.18
SMC1A-203ENST00000428014 SOGA1O94964 1423 aa16.11■□□□□ 0.17
SMC1A-203ENST00000428014 FGD5Q6ZNL6 1462 aa16.1■□□□□ 0.17
SMC1A-203ENST00000428014 ZNF608Q9ULD9 1512 aaPredicted RBP16.09■□□□□ 0.17
SMC1A-203ENST00000428014 EIF4G3O43432 1585 aaKnown RBP16.09■□□□□ 0.17
SMC1A-203ENST00000428014 WRNQ14191 1432 aaPredicted RBP eCLIP16.07■□□□□ 0.16
SMC1A-203ENST00000428014 TOP2BQ02880 1626 aa16.07■□□□□ 0.16
SMC1A-203ENST00000428014 BIVM-ERCC5R4GMW8 1640 aa16.06■□□□□ 0.16
SMC1A-203ENST00000428014 ABCA10Q8WWZ4 1543 aa16.05■□□□□ 0.16
SMC1A-203ENST00000428014 OSCARQ8IYS5 282 aa16.04■□□□□ 0.16
SMC1A-203ENST00000428014 RAD54L2Q9Y4B4 1467 aa16.02■□□□□ 0.15
SMC1A-203ENST00000428014 MAGI1Q96QZ7 1491 aaPredicted RBP16■□□□□ 0.15
SMC1A-203ENST00000428014 AQRO60306 1485 aaKnown RBP eCLIP15.99■□□□□ 0.153e-7■■■□□ 16.2
SMC1A-203ENST00000428014 GRIN2BQ13224 1484 aa15.99■□□□□ 0.15
SMC1A-203ENST00000428014 ABCA5Q8WWZ7 1642 aa15.95■□□□□ 0.14
SMC1A-203ENST00000428014 TDRD9Q8NDG6 1382 aaKnown RBP15.95■□□□□ 0.14
SMC1A-203ENST00000428014 GAPVD1Q14C86 1478 aa15.95■□□□□ 0.14
SMC1A-203ENST00000428014 SYNJ1O43426 1573 aa15.95■□□□□ 0.14
SMC1A-203ENST00000428014 PIAS4Q8N2W9 510 aaPredicted RBP15.94■□□□□ 0.14
SMC1A-203ENST00000428014 SYNJ2O15056 1496 aa15.91■□□□□ 0.14
SMC1A-203ENST00000428014 ERICH3Q5RHP9 1530 aa15.89■□□□□ 0.13
SMC1A-203ENST00000428014 SNAPC4Q5SXM2 1469 aa15.88■□□□□ 0.13
SMC1A-203ENST00000428014 PBRM1Q86U86 1689 aa15.86■□□□□ 0.13
SMC1A-203ENST00000428014 CHD1O14646 1710 aa15.84■□□□□ 0.13
SMC1A-203ENST00000428014 FHAD1B1AJZ9 1412 aa15.81■□□□□ 0.12
SMC1A-203ENST00000428014 CHMP7Q8WUX9 453 aaPredicted RBP15.8■□□□□ 0.12
SMC1A-203ENST00000428014 CLASP1Q7Z460 1538 aa15.79■□□□□ 0.12
SMC1A-203ENST00000428014 ADAMTS12P58397 1594 aa15.78■□□□□ 0.12
SMC1A-203ENST00000428014 KIF27Q86VH2 1401 aa15.77■□□□□ 0.12
SMC1A-203ENST00000428014 GRIN2AQ12879 1464 aa15.76■□□□□ 0.11
SMC1A-203ENST00000428014 NUP160Q12769 1436 aa15.76■□□□□ 0.11
SMC1A-203ENST00000428014 ARHGEF11O15085 1522 aa15.75■□□□□ 0.11
SMC1A-203ENST00000428014 FBLN2P98095 1184 aa15.72■□□□□ 0.11
SMC1A-203ENST00000428014 RIMBP3CA6NJZ7 1639 aa15.71■□□□□ 0.11
SMC1A-203ENST00000428014 RIMBP3BA6NNM3 1639 aa15.71■□□□□ 0.11
SMC1A-203ENST00000428014 RIMBP3Q9UFD9 1639 aa15.71■□□□□ 0.11
SMC1A-203ENST00000428014 CUL7Q14999 1698 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms