RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 TDRD9Q8NDG6 1382 aaKnown RBP20.08■□□□□ 0.8
USP42-203ENST00000426246 CENPBP07199 599 aaPredicted RBP20.07■□□□□ 0.8
USP42-203ENST00000426246 GAPVD1Q14C86 1478 aa20.07■□□□□ 0.8
USP42-203ENST00000426246 ARAP1Q96P48 1450 aa20.05■□□□□ 0.8
USP42-203ENST00000426246 PBRM1Q86U86 1689 aa20.05■□□□□ 0.8
USP42-203ENST00000426246 VPS8Q8N3P4 1428 aa20.03■□□□□ 0.8
USP42-203ENST00000426246 ERCC6Q03468 1493 aa20.02■□□□□ 0.8
USP42-203ENST00000426246 ACIN1Q9UKV3 1341 aaKnown RBP20■□□□□ 0.79
USP42-203ENST00000426246 ARHGAP35Q9NRY4 1499 aa20■□□□□ 0.79
USP42-203ENST00000426246 IFT140Q96RY7 1462 aa20■□□□□ 0.79
USP42-203ENST00000426246 ATP1B4Q9UN42 357 aaPredicted RBP20■□□□□ 0.79
USP42-203ENST00000426246 CTTNBP2Q8WZ74 1663 aa19.98■□□□□ 0.79
USP42-203ENST00000426246 ZNF608Q9ULD9 1512 aaPredicted RBP19.97■□□□□ 0.79
USP42-203ENST00000426246 AQRO60306 1485 aaKnown RBP eCLIP19.96■□□□□ 0.793e-6■■■□□ 17.1
USP42-203ENST00000426246 ADAMTS12P58397 1594 aa19.93■□□□□ 0.78
USP42-203ENST00000426246 EIF4G3O43432 1585 aaKnown RBP19.91■□□□□ 0.78
USP42-203ENST00000426246 GRIN2BQ13224 1484 aa19.88■□□□□ 0.77
USP42-203ENST00000426246 FHAD1B1AJZ9 1412 aa19.85■□□□□ 0.77
USP42-203ENST00000426246 ZNF316A6NFI3 1004 aaPredicted RBP19.82■□□□□ 0.76
USP42-203ENST00000426246 MIER1Q8N108 512 aa19.82■□□□□ 0.76
USP42-203ENST00000426246 EFCAB5A4FU69 1503 aa19.81■□□□□ 0.76
USP42-203ENST00000426246 SAMD9Q5K651 1589 aa19.81■□□□□ 0.76
USP42-203ENST00000426246 SNAPC4Q5SXM2 1469 aa19.77■□□□□ 0.76
USP42-203ENST00000426246 PELP1Q8IZL8 1130 aaKnown RBP19.73■□□□□ 0.75
USP42-203ENST00000426246 MAGI1Q96QZ7 1491 aaPredicted RBP19.71■□□□□ 0.75
USP42-203ENST00000426246 PCF11O94913 1555 aaKnown RBP19.71■□□□□ 0.75
USP42-203ENST00000426246 FHOD3Q2V2M9 1422 aa19.71■□□□□ 0.75
USP42-203ENST00000426246 IQGAP2Q13576 1575 aa19.69■□□□□ 0.74
USP42-203ENST00000426246 MAP3K1Q13233 1512 aa19.69■□□□□ 0.74
USP42-203ENST00000426246 GRIN2AQ12879 1464 aa19.68■□□□□ 0.74
USP42-203ENST00000426246 TIAM1Q13009 1591 aa19.66■□□□□ 0.74
USP42-203ENST00000426246 KANK4Q5T7N3 995 aaPredicted RBP19.66■□□□□ 0.74
USP42-203ENST00000426246 CFAP43Q8NDM7 1665 aa19.66■□□□□ 0.74
USP42-203ENST00000426246 P3H3Q8IVL6 736 aa19.65■□□□□ 0.74
USP42-203ENST00000426246 SYNJ2O15056 1496 aa19.64■□□□□ 0.73
USP42-203ENST00000426246 LRRIQ1Q96JM4 1722 aa19.64■□□□□ 0.73
USP42-203ENST00000426246 CEP170Q5SW79 1584 aa19.62■□□□□ 0.73
USP42-203ENST00000426246 UGGT2Q9NYU1 1516 aa19.62■□□□□ 0.73
USP42-203ENST00000426246 FYCO1Q9BQS8 1478 aa19.62■□□□□ 0.73
USP42-203ENST00000426246 CASKIN1Q8WXD9 1431 aa19.61■□□□□ 0.73
USP42-203ENST00000426246 KIAA0586Q9BVV6 1533 aa19.6■□□□□ 0.73
USP42-203ENST00000426246 BCANQ96GW7 911 aa19.59■□□□□ 0.73
USP42-203ENST00000426246 FMN1Q68DA7 1419 aa19.57■□□□□ 0.72
USP42-203ENST00000426246 HIRIP3Q9BW71 556 aaPredicted RBP19.57■□□□□ 0.72
USP42-203ENST00000426246 NUP160Q12769 1436 aa19.56■□□□□ 0.72
USP42-203ENST00000426246 DISP1Q96F81 1524 aa19.55■□□□□ 0.72
USP42-203ENST00000426246 LRRC9Q6ZRR7 1453 aa19.55■□□□□ 0.72
USP42-203ENST00000426246 KIAA0556O60303 1618 aa19.52■□□□□ 0.72
USP42-203ENST00000426246 FAM50AQ14320 339 aaKnown RBP19.5■□□□□ 0.71
USP42-203ENST00000426246 CNGB1Q14028 1251 aaPredicted RBP19.5■□□□□ 0.71
USP42-203ENST00000426246 RRBP1Q9P2E9 1410 aaKnown RBP19.5■□□□□ 0.71
USP42-203ENST00000426246 CHD1O14646 1710 aa19.46■□□□□ 0.71
USP42-203ENST00000426246 CHMP7Q8WUX9 453 aaPredicted RBP19.46■□□□□ 0.71
USP42-203ENST00000426246 HECW1Q76N89 1606 aa19.4■□□□□ 0.7
USP42-203ENST00000426246 MAGI3Q5TCQ9 1506 aa19.4■□□□□ 0.7
USP42-203ENST00000426246 PHLDB1Q86UU1 1377 aa19.4■□□□□ 0.7
USP42-203ENST00000426246 ARID3CA6NKF2 412 aa19.37■□□□□ 0.69
USP42-203ENST00000426246 FBLN2P98095 1184 aa19.37■□□□□ 0.69
USP42-203ENST00000426246 CCDC18Q5T9S5 1454 aa19.35■□□□□ 0.69
USP42-203ENST00000426246 EPRSP07814 1512 aaKnown RBP19.35■□□□□ 0.69
USP42-203ENST00000426246 CCNB3Q8WWL7 1395 aa19.35■□□□□ 0.69
USP42-203ENST00000426246 RAPGEF6Q8TEU7 1601 aa19.33■□□□□ 0.69
USP42-203ENST00000426246 ARHGEF11O15085 1522 aa19.33■□□□□ 0.69
USP42-203ENST00000426246 SHROOM2Q13796 1616 aa19.33■□□□□ 0.69
USP42-203ENST00000426246 KCNH8Q96L42 1107 aa19.32■□□□□ 0.68
USP42-203ENST00000426246 NUP153P49790 1475 aaKnown RBP19.32■□□□□ 0.68
USP42-203ENST00000426246 CDK13Q14004 1512 aaKnown RBP19.31■□□□□ 0.68
USP42-203ENST00000426246 EHBP1L1Q8N3D4 1523 aa19.31■□□□□ 0.68
USP42-203ENST00000426246 DDX10Q13206 875 aaKnown RBP19.31■□□□□ 0.68
USP42-203ENST00000426246 JPH4Q96JJ6 628 aa19.31■□□□□ 0.68
USP42-203ENST00000426246 SUPT6HQ7KZ85 1726 aaKnown RBP19.28■□□□□ 0.68
USP42-203ENST00000426246 SIN3AQ96ST3 1273 aa19.26■□□□□ 0.67
USP42-203ENST00000426246 NCOA2Q15596 1464 aa19.25■□□□□ 0.67
USP42-203ENST00000426246 PLB1Q6P1J6 1458 aa19.25■□□□□ 0.67
USP42-203ENST00000426246 CARMIL2Q6F5E8 1435 aa19.24■□□□□ 0.67
USP42-203ENST00000426246 ABCA8O94911 1581 aa19.24■□□□□ 0.67
USP42-203ENST00000426246 CLASP1Q7Z460 1538 aa19.24■□□□□ 0.67
USP42-203ENST00000426246 MTUS2Q5JR59 1369 aa19.24■□□□□ 0.67
USP42-203ENST00000426246 TRIM52Q96A61 297 aa19.22■□□□□ 0.67
USP42-203ENST00000426246 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.21■□□□□ 0.67
USP42-203ENST00000426246 FGD6Q6ZV73 1430 aa19.21■□□□□ 0.67
USP42-203ENST00000426246 PRG4Q92954 1404 aaPredicted RBP19.2■□□□□ 0.66
USP42-203ENST00000426246 ERCC6L2Q5T890 1561 aa19.18■□□□□ 0.66
USP42-203ENST00000426246 MYOM3Q5VTT5 1437 aa19.17■□□□□ 0.66
USP42-203ENST00000426246 SENP3-EIF4A1A0A087X0R7 540 aa19.15■□□□□ 0.66
USP42-203ENST00000426246 POLR3GLQ9BT43 218 aa19.13■□□□□ 0.65
USP42-203ENST00000426246 ADCY10Q96PN6 1610 aa19.13■□□□□ 0.65
USP42-203ENST00000426246 PTPN23Q9H3S7 1636 aa19.13■□□□□ 0.65
USP42-203ENST00000426246 TCOF1Q13428 1488 aaKnown RBP19.11■□□□□ 0.65
USP42-203ENST00000426246 FKBP8Q14318 412 aa19.1■□□□□ 0.65
USP42-203ENST00000426246 PTPRKQ15262 1439 aa19.09■□□□□ 0.65
USP42-203ENST00000426246 ATP10BO94823 1461 aa19.08■□□□□ 0.65
USP42-203ENST00000426246 KIF14Q15058 1648 aa19.08■□□□□ 0.64
USP42-203ENST00000426246 IRX6P78412 446 aaPredicted RBP19.07■□□□□ 0.64
USP42-203ENST00000426246 PTPRGP23470 1445 aa19.06■□□□□ 0.64
USP42-203ENST00000426246 TROQ12816 1431 aaPredicted RBP19.06■□□□□ 0.64
USP42-203ENST00000426246 DHX57Q6P158 1386 aaKnown RBP19.06■□□□□ 0.64
USP42-203ENST00000426246 CHIC2Q9UKJ5 165 aa19.05■□□□□ 0.64
USP42-203ENST00000426246 SUPT16HQ9Y5B9 1047 aaKnown RBP19.05■□□□□ 0.64
USP42-203ENST00000426246 MIA2Q96PC5 1412 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms